HEADER HYDROLASE 13-NOV-14 4WX4 TITLE CRYSTAL STRUCTURE OF ADENOVIRUS 8 PROTEASE IN COMPLEX WITH A NITRILE TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: PEPTIDE; COMPND 6 CHAIN: C; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS D SEROTYPE 8; SOURCE 3 ORGANISM_COMMON: HADV-8; SOURCE 4 ORGANISM_TAXID: 31545; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630 KEYWDS CYSTEINE PROTEASE, INHIBITOR, COFACTOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.GROSCHE,F.SIROCKIN,A.MAC SWEENEY,P.RAMAGE,P.ERBEL,S.MELKKO, AUTHOR 2 A.BERNARDI,N.HUGHES,D.ELLIS,K.COMBRINK,N.JAROUSSE,E.ALTMANN REVDAT 2 28-JAN-15 4WX4 1 JRNL REVDAT 1 14-JAN-15 4WX4 0 JRNL AUTH P.GROSCHE,F.SIROCKIN,A.MAC SWEENEY,P.RAMAGE,P.ERBEL, JRNL AUTH 2 S.MELKKO,A.BERNARDI,N.HUGHES,D.ELLIS,K.D.COMBRINK, JRNL AUTH 3 N.JAROUSSE,E.ALTMANN JRNL TITL STRUCTURE-BASED DESIGN AND OPTIMIZATION OF POTENT INHIBITORS JRNL TITL 2 OF THE ADENOVIRAL PROTEASE. JRNL REF BIOORG.MED.CHEM.LETT. V. 25 438 2015 JRNL REFN ESSN 1464-3405 JRNL PMID 25571794 JRNL DOI 10.1016/J.BMCL.2014.12.057 REMARK 2 REMARK 2 RESOLUTION. 1.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.7 REMARK 3 NUMBER OF REFLECTIONS : 83041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.118 REMARK 3 R VALUE (WORKING SET) : 0.117 REMARK 3 FREE R VALUE : 0.137 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4371 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2809 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 39.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.1280 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.1570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1678 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.023 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.012 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.482 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1857 ; 0.026 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2524 ; 2.194 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ; 6.298 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;28.206 ;20.909 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 307 ;12.039 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.124 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 255 ; 0.160 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1459 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1857 ;10.666 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 44 ;29.022 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2002 ;13.761 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4WX4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000204658. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102036 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.030 REMARK 200 RESOLUTION RANGE LOW (A) : 58.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.02500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 39.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.08300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION RESERVOIR SOLUTION = REMARK 280 0.2M PROLINE, 0.1M HEPES PH 7.5, 10% PEG3350 CRYSTALLIZATION REMARK 280 PROTEIN SOLUTION = 5 MG/ML ADENAIN IN 20 MM TRIS, 100 MM NACL, REMARK 280 PH 7.6. 5 MM INHIBITOR ADDED., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.39500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LYS A 202 REMARK 465 GLN A 203 REMARK 465 LEU A 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N VAL C 301 C GLY C 401 1.33 REMARK 500 NH2 ARG C 308 O HOH C 515 1.92 REMARK 500 NH1 ARG A 78 O HOH A 607 1.97 REMARK 500 NH1 ARG A 94 O HOH A 628 2.06 REMARK 500 CG ARG A 176 O HOH A 585 2.15 REMARK 500 O HOH A 556 O HOH A 597 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 496 O HOH C 508 1455 1.06 REMARK 500 O HOH A 463 O HOH A 482 2556 2.09 REMARK 500 NH1 ARG A 94 O HOH A 431 2545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 12 CB VAL A 12 CG1 -0.153 REMARK 500 VAL A 12 CB VAL A 12 CG2 -0.211 REMARK 500 ARG A 28 CG ARG A 28 CD -0.155 REMARK 500 ASN A 36 CB ASN A 36 CG 0.154 REMARK 500 LYS A 37 CD LYS A 37 CE 0.235 REMARK 500 ARG A 94 N ARG A 94 CA 0.141 REMARK 500 ARG A 94 NE ARG A 94 CZ 0.080 REMARK 500 ARG A 94 CZ ARG A 94 NH2 -0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 MET A 91 CA - CB - CG ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 93 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 94 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 94 NE - CZ - NH1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 94 NE - CZ - NH1 ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG A 94 NE - CZ - NH2 ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG A 94 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 94 NE - CZ - NH2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ARG A 103 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 LEU A 107 CB - CG - CD1 ANGL. DEV. = 15.6 DEGREES REMARK 500 ARG A 176 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 199 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 LYS A 200 CD - CE - NZ ANGL. DEV. = -17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 29 123.34 -37.84 REMARK 500 VAL A 53 -51.68 -132.92 REMARK 500 ARG A 139 62.95 -156.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 169 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLY C 401 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3VF A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY C 401 DBREF 4WX4 A 0 204 UNP B9A5C1 B9A5C1_ADE08 1 205 DBREF 4WX4 C 301 310 PDB 4WX4 4WX4 301 310 SEQRES 1 A 205 MET SER GLY SER SER GLU GLN GLU LEU ALA ALA ILE VAL SEQRES 2 A 205 ARG ASP LEU GLY CYS GLY PRO TYR PHE LEU GLY THR HIS SEQRES 3 A 205 ASP LYS ARG PHE PRO GLY PHE LEU ALA GLY ASN LYS LEU SEQRES 4 A 205 ALA CYS ALA ILE VAL ASN THR ALA GLY ARG GLU THR GLY SEQRES 5 A 205 GLY VAL HIS TRP LEU ALA PHE GLY TRP ASN PRO ARG SER SEQRES 6 A 205 ARG THR CYS TYR MET PHE ASP PRO PHE GLY PHE SER ASP SEQRES 7 A 205 ARG ARG LEU LYS GLN ILE TYR SER PHE GLU TYR GLU ALA SEQRES 8 A 205 MET LEU ARG ARG SER ALA LEU ALA LEU SER PRO ASP ARG SEQRES 9 A 205 CYS LEU SER LEU GLU GLN SER THR GLN THR VAL GLN GLY SEQRES 10 A 205 PRO ASP SER ALA ALA CYS GLY LEU PHE CYS CYS MET PHE SEQRES 11 A 205 LEU HIS ALA PHE VAL HIS TRP PRO ASP ARG PRO MET ASP SEQRES 12 A 205 GLY ASN PRO THR MET ASN LEU LEU THR GLY VAL PRO ASN SEQRES 13 A 205 GLY MET LEU GLN SER PRO GLN VAL LEU PRO THR LEU ARG SEQRES 14 A 205 ARG ASN GLN GLU LYS LEU TYR ARG PHE LEU ALA HIS HIS SEQRES 15 A 205 SER PRO TYR PHE ARG SER HIS ARG ALA ALA ILE GLU HIS SEQRES 16 A 205 ALA THR ALA PHE ASP LYS MET LYS GLN LEU SEQRES 1 C 10 VAL LYS SER LEU LYS ARG ARG ARG CYS TYR HET 3VF A 301 33 HET EPE A 302 15 HET GLY C 401 4 HETNAM 3VF N-[(2-CYANOPYRIMIDIN-4-YL)METHYL]-3-[2-(3,5- HETNAM 2 3VF DICHLOROPHENYL)-2-METHYLPROPANOYL]-4-METHOXYBENZAMIDE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM GLY GLYCINE HETSYN EPE HEPES FORMUL 3 3VF C24 H20 CL2 N4 O3 FORMUL 4 EPE C8 H18 N2 O4 S FORMUL 5 GLY C2 H5 N O2 FORMUL 6 HOH *250(H2 O) HELIX 1 AA1 SER A 4 LEU A 15 1 12 HELIX 2 AA2 CYS A 17 PRO A 19 5 3 HELIX 3 AA3 GLY A 47 GLY A 51 5 5 HELIX 4 AA4 SER A 76 SER A 85 1 10 HELIX 5 AA5 TYR A 88 SER A 100 1 13 HELIX 6 AA6 ALA A 121 TRP A 136 1 16 HELIX 7 AA7 THR A 146 LEU A 150 5 5 HELIX 8 AA8 GLY A 156 LEU A 158 5 3 HELIX 9 AA9 SER A 160 GLN A 162 5 3 HELIX 10 AB1 VAL A 163 SER A 182 1 20 HELIX 11 AB2 SER A 182 HIS A 188 1 7 HELIX 12 AB3 HIS A 188 THR A 196 1 9 SHEET 1 AA1 6 PHE A 21 HIS A 25 0 SHEET 2 AA1 6 ALA A 39 ASN A 44 1 O CYS A 40 N LEU A 22 SHEET 3 AA1 6 TRP A 55 ASN A 61 -1 O TRP A 60 N ALA A 39 SHEET 4 AA1 6 THR A 66 PHE A 70 -1 O PHE A 70 N ALA A 57 SHEET 5 AA1 6 CYS A 104 SER A 110 1 O SER A 106 N CYS A 67 SHEET 6 AA1 6 SER C 303 CYS C 309 -1 O ARG C 308 N LEU A 105 SHEET 1 AA2 2 GLN A 112 THR A 113 0 SHEET 2 AA2 2 VAL A 153 PRO A 154 -1 O VAL A 153 N THR A 113 SSBOND 1 CYS A 104 CYS C 309 1555 1555 2.04 LINK SG CYS A 122 C9 3VF A 301 1555 1555 1.79 SITE 1 AC1 21 SER A 1 SER A 3 SER A 4 GLU A 5 SITE 2 AC1 21 THR A 24 HIS A 25 ASP A 26 ASN A 44 SITE 3 AC1 21 ALA A 46 GLY A 47 ARG A 48 GLY A 51 SITE 4 AC1 21 GLY A 52 VAL A 53 TRP A 55 GLN A 115 SITE 5 AC1 21 SER A 119 ALA A 120 ALA A 121 CYS A 122 SITE 6 AC1 21 EPE A 302 SITE 1 AC2 9 LEU A 22 GLY A 23 THR A 24 HIS A 25 SITE 2 AC2 9 ASP A 26 ARG A 48 3VF A 301 HOH A 569 SITE 3 AC2 9 HOH A 599 SITE 1 AC3 7 MET A 141 ASP A 142 MET A 147 LEU A 150 SITE 2 AC3 7 GLY A 152 VAL C 301 HOH C 512 CRYST1 41.454 42.790 59.059 90.00 93.16 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024123 0.000000 0.001331 0.00000 SCALE2 0.000000 0.023370 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016958 0.00000 MASTER 396 0 3 12 8 0 11 6 0 0 0 17 END