HEADER SUGAR BINDING PROTEIN 23-OCT-14 4WRF TITLE CRYSTAL STRUCTURE OF SURFACTANT PROTEIN-A DEDN MUTANT TITLE 2 (E171D/P175E/R197N/K203D) COMPLEXED WITH MANNOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PULMONARY SURFACTANT-ASSOCIATED PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NECK AND CARBOHYDRATE RECOGNITION DOMAIN; COMPND 5 SYNONYM: SP-A; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: SFTPA1, SFTP-1, SFTP1, SFTPA; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PVL 1392 KEYWDS COLLECTIN, CARBOHYDRATE BINDING, LECTIN, LIPID BINDING, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RYNKIEWICZ,H.WU,T.R.CAFARELLA,N.M.NIKOLAIDIS,J.F.HEAD,B.A.SEATON, AUTHOR 2 F.X.MCCORMACK REVDAT 4 29-JUL-20 4WRF 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 11-DEC-19 4WRF 1 REMARK REVDAT 2 20-SEP-17 4WRF 1 REMARK REVDAT 1 10-FEB-16 4WRF 0 JRNL AUTH M.J.RYNKIEWICZ,H.WU,T.R.CAFARELLA,N.M.NIKOLAIDIS,J.F.HEAD, JRNL AUTH 2 B.A.SEATON,F.X.MCCORMACK JRNL TITL DIFFERENTIAL LIGAND BINDING SPECIFICITIES OF THE PULMONARY JRNL TITL 2 COLLECTINS ARE DETERMINED BY THE CONFORMATIONAL FREEDOM OF A JRNL TITL 3 SURFACE LOOP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 12242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9290 - 3.9322 0.99 1317 157 0.2020 0.2331 REMARK 3 2 3.9322 - 3.1305 0.99 1262 142 0.1881 0.2326 REMARK 3 3 3.1305 - 2.7376 1.00 1260 140 0.1945 0.2523 REMARK 3 4 2.7376 - 2.4885 0.99 1253 135 0.1903 0.2827 REMARK 3 5 2.4885 - 2.3109 0.99 1214 143 0.1906 0.2285 REMARK 3 6 2.3109 - 2.1751 0.98 1236 132 0.2033 0.2296 REMARK 3 7 2.1751 - 2.0664 0.98 1225 131 0.1960 0.2384 REMARK 3 8 2.0664 - 1.9767 0.96 1186 135 0.2120 0.2846 REMARK 3 9 1.9767 - 1.9007 0.85 1057 117 0.2728 0.3180 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 1183 REMARK 3 ANGLE : 0.936 1573 REMARK 3 CHIRALITY : 0.041 170 REMARK 3 PLANARITY : 0.004 206 REMARK 3 DIHEDRAL : 12.743 433 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 87:109 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8887 -37.7377 27.7347 REMARK 3 T TENSOR REMARK 3 T11: 0.3118 T22: 0.3769 REMARK 3 T33: 0.3743 T12: 0.0167 REMARK 3 T13: -0.0513 T23: 0.0618 REMARK 3 L TENSOR REMARK 3 L11: 1.4923 L22: 1.5883 REMARK 3 L33: 0.6147 L12: 0.5537 REMARK 3 L13: -0.0073 L23: 0.2747 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: -0.6423 S13: -0.0921 REMARK 3 S21: 0.5560 S22: -0.2320 S23: -0.2301 REMARK 3 S31: -0.1488 S32: -0.1364 S33: -0.0315 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 110:228 REMARK 3 ORIGIN FOR THE GROUP (A): -14.7975 -21.6898 13.1814 REMARK 3 T TENSOR REMARK 3 T11: 0.1775 T22: 0.2412 REMARK 3 T33: 0.2002 T12: 0.0237 REMARK 3 T13: -0.0016 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 2.3807 L22: 3.3690 REMARK 3 L33: 3.9117 L12: -0.7974 REMARK 3 L13: 0.1975 L23: -0.3362 REMARK 3 S TENSOR REMARK 3 S11: 0.0911 S12: 0.0696 S13: 0.0812 REMARK 3 S21: -0.0854 S22: -0.1368 S23: 0.0511 REMARK 3 S31: -0.1977 S32: -0.3102 S33: -0.0050 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WRF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204381. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12478 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.39700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB CODE 4WRC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DEDN (17 MG/ML) CRYSTALLIZED IN REMARK 280 HANGING DROPS FROM A RESERVOIR SOLUTION OF 0.2 M CALCIUM REMARK 280 CHLORIDE AND 14% (W/V) PEG 3,350. BEFORE FREEZING, THE CRYSTALS REMARK 280 WERE SOAKED IN RESERVOIR SOLUTION SUPPLEMENTED WITH 1.5 M 1,6- REMARK 280 HEXANEDIOL AS A CRYOPROTECTANT WITH 5% (W/V) MANNOSE FOR 30 REMARK 280 MINUTES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 34.57850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 19.96391 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 56.52200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 34.57850 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 19.96391 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 56.52200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 34.57850 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 19.96391 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 56.52200 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 34.57850 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 19.96391 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 56.52200 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 34.57850 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 19.96391 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 56.52200 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 34.57850 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 19.96391 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 56.52200 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 39.92781 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 113.04400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 39.92781 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 113.04400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 39.92781 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 113.04400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 39.92781 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 113.04400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 39.92781 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 113.04400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 39.92781 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 113.04400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -34.57850 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -59.89172 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 34.57850 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -59.89172 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 517 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 81 REMARK 465 TYR A 82 REMARK 465 LEU A 83 REMARK 465 ASP A 84 REMARK 465 GLU A 85 REMARK 465 GLU A 86 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 172 -86.89 -44.67 REMARK 500 SER A 187 -83.37 -101.34 REMARK 500 ASN A 190 54.79 -149.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 171 OD1 REMARK 620 2 ASP A 171 OD2 52.8 REMARK 620 3 GLU A 175 OE1 99.7 74.0 REMARK 620 4 GLU A 175 OE2 127.8 75.6 53.6 REMARK 620 5 GLU A 202 O 80.0 116.8 163.8 138.3 REMARK 620 6 ASP A 203 OD1 65.7 108.0 84.1 135.6 81.1 REMARK 620 7 HOH A 608 O 112.2 82.5 114.9 62.1 79.6 160.6 REMARK 620 8 HOH A 609 O 158.7 148.2 93.0 73.4 83.1 99.0 77.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 195 OE1 REMARK 620 2 ASN A 197 OD1 74.5 REMARK 620 3 GLU A 202 OE1 151.2 80.9 REMARK 620 4 ASN A 214 OD1 64.0 135.7 143.1 REMARK 620 5 ASP A 215 O 126.5 146.8 70.4 75.5 REMARK 620 6 ASP A 215 OD1 71.8 88.2 92.9 92.9 77.3 REMARK 620 7 MAN A 404 O3 132.5 116.0 72.2 84.0 71.1 148.0 REMARK 620 8 MAN A 404 O4 71.1 76.6 117.6 76.0 131.4 142.4 67.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 200 O REMARK 620 2 ASP A 203 OD1 83.6 REMARK 620 3 ASP A 203 OD2 131.1 54.7 REMARK 620 4 HOH A 521 O 87.0 88.5 69.5 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WRC RELATED DB: PDB REMARK 900 RELATED ID: 4WRE RELATED DB: PDB REMARK 900 RELATED ID: 4WR9 RELATED DB: PDB DBREF 4WRF A 81 228 UNP P08427 SFTPA_RAT 101 248 SEQADV 4WRF ASP A 171 UNP P08427 GLU 191 ENGINEERED MUTATION SEQADV 4WRF GLU A 175 UNP P08427 PRO 195 ENGINEERED MUTATION SEQADV 4WRF SER A 187 UNP P08427 ASN 207 ENGINEERED MUTATION SEQADV 4WRF ASN A 197 UNP P08427 ARG 217 ENGINEERED MUTATION SEQADV 4WRF ASP A 203 UNP P08427 LYS 223 ENGINEERED MUTATION SEQRES 1 A 148 ALA TYR LEU ASP GLU GLU LEU GLN THR GLU LEU TYR GLU SEQRES 2 A 148 ILE LYS HIS GLN ILE LEU GLN THR MET GLY VAL LEU SER SEQRES 3 A 148 LEU GLN GLY SER MET LEU SER VAL GLY ASP LYS VAL PHE SEQRES 4 A 148 SER THR ASN GLY GLN SER VAL ASN PHE ASP THR ILE LYS SEQRES 5 A 148 GLU MET CYS THR ARG ALA GLY GLY ASN ILE ALA VAL PRO SEQRES 6 A 148 ARG THR PRO GLU GLU ASN GLU ALA ILE ALA SER ILE ALA SEQRES 7 A 148 LYS LYS TYR ASN ASN TYR VAL TYR LEU GLY MET ILE ASP SEQRES 8 A 148 ASP GLN THR GLU GLY ASP PHE HIS TYR LEU ASP GLY ALA SEQRES 9 A 148 SER VAL SER TYR THR ASN TRP TYR PRO GLY GLU PRO ASN SEQRES 10 A 148 GLY GLN GLY LYS GLU ASP CYS VAL GLU MET TYR THR ASP SEQRES 11 A 148 GLY THR TRP ASN ASP ARG GLY CYS LEU GLN TYR ARG LEU SEQRES 12 A 148 ALA VAL CYS GLU PHE HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET MAN A 404 12 HET HEZ A 405 8 HET CL A 406 1 HETNAM CA CALCIUM ION HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM HEZ HEXANE-1,6-DIOL HETNAM CL CHLORIDE ION FORMUL 2 CA 3(CA 2+) FORMUL 5 MAN C6 H12 O6 FORMUL 6 HEZ C6 H14 O2 FORMUL 7 CL CL 1- FORMUL 8 HOH *109(H2 O) HELIX 1 AA1 LEU A 87 GLN A 108 1 22 HELIX 2 AA2 ASN A 127 ALA A 138 1 12 HELIX 3 AA3 THR A 147 TYR A 161 1 15 SHEET 1 AA1 4 LEU A 112 VAL A 114 0 SHEET 2 AA1 4 LYS A 117 SER A 120 -1 O PHE A 119 N LEU A 112 SHEET 3 AA1 4 CYS A 226 PHE A 228 -1 O CYS A 226 N SER A 120 SHEET 4 AA1 4 ASN A 141 ILE A 142 -1 N ASN A 141 O GLU A 227 SHEET 1 AA2 2 SER A 125 VAL A 126 0 SHEET 2 AA2 2 ARG A 222 LEU A 223 -1 O ARG A 222 N VAL A 126 SHEET 1 AA3 3 VAL A 165 TYR A 166 0 SHEET 2 AA3 3 CYS A 204 MET A 207 -1 O MET A 207 N VAL A 165 SHEET 3 AA3 3 TRP A 213 ARG A 216 -1 O ASN A 214 N GLU A 206 SHEET 1 AA4 2 MET A 169 ILE A 170 0 SHEET 2 AA4 2 HIS A 179 TYR A 180 -1 O HIS A 179 N ILE A 170 SSBOND 1 CYS A 135 CYS A 226 1555 1555 2.05 SSBOND 2 CYS A 204 CYS A 218 1555 1555 2.02 LINK OD1 ASP A 171 CA CA A 402 1555 1555 2.50 LINK OD2 ASP A 171 CA CA A 402 1555 1555 2.39 LINK OE1 GLU A 175 CA CA A 402 1555 1555 2.43 LINK OE2 GLU A 175 CA CA A 402 1555 1555 2.44 LINK OE1 GLU A 195 CA CA A 401 1555 1555 2.49 LINK OD1 ASN A 197 CA CA A 401 1555 1555 2.41 LINK O GLY A 200 CA CA A 403 1555 1555 2.39 LINK OE1 GLU A 202 CA CA A 401 1555 1555 2.39 LINK O GLU A 202 CA CA A 402 1555 1555 2.56 LINK OD1 ASP A 203 CA CA A 402 1555 1555 3.14 LINK OD1 ASP A 203 CA CA A 403 1555 1555 2.47 LINK OD2 ASP A 203 CA CA A 403 1555 1555 2.31 LINK OD1 ASN A 214 CA CA A 401 1555 1555 2.37 LINK O ASP A 215 CA CA A 401 1555 1555 2.44 LINK OD1 ASP A 215 CA CA A 401 1555 1555 2.32 LINK CA CA A 401 O3 MAN A 404 1555 1555 2.48 LINK CA CA A 401 O4 MAN A 404 1555 1555 2.70 LINK CA CA A 402 O HOH A 608 1555 1555 2.30 LINK CA CA A 402 O HOH A 609 1555 1555 2.33 LINK CA CA A 403 O HOH A 521 1555 1555 2.47 CISPEP 1 GLU A 195 PRO A 196 0 -1.89 CRYST1 69.157 69.157 169.566 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014460 0.008348 0.000000 0.00000 SCALE2 0.000000 0.016697 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005897 0.00000 MASTER 382 0 6 3 11 0 0 6 0 0 0 12 END