HEADER HYDROLASE/HYDROLASE INHIBITOR 20-SEP-14 4WH8 TITLE CRYSTAL STRUCTURE OF HCV NS3/4A PROTEASE IN COMPLEX WITH AN TITLE 2 ASUNAPREVIR P1-P3 MACROCYCLIC ANALOG. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1030-1205; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS SUBTYPE 1A; SOURCE 3 ORGANISM_TAXID: 31646; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HCV DRUG RESISTANCE, PROTEASE-INHIBITOR COMPLEX, ASUNAPREVIR, KEYWDS 2 MACROCYCLE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.I.SOUMANA,A.ALI,C.A.SCHIFFER REVDAT 4 11-DEC-19 4WH8 1 REMARK REVDAT 3 06-SEP-17 4WH8 1 SOURCE KEYWDS REMARK ATOM REVDAT 2 03-DEC-14 4WH8 1 JRNL REVDAT 1 15-OCT-14 4WH8 0 JRNL AUTH D.I.SOUMANA,A.ALI,C.A.SCHIFFER JRNL TITL STRUCTURAL ANALYSIS OF ASUNAPREVIR RESISTANCE IN HCV NS3/4A JRNL TITL 2 PROTEASE. JRNL REF ACS CHEM.BIOL. V. 9 2485 2014 JRNL REFN ESSN 1554-8937 JRNL PMID 25243902 JRNL DOI 10.1021/CB5006118 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 6134 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.740 REMARK 3 FREE R VALUE TEST SET COUNT : 488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WH8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000, DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-3000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6134 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 TO 26% PEG-3350, 0.1 M SODIUM MES REMARK 280 BUFFER AT PH 6.5, AND 4% AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.48750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 986 CG SD CE REMARK 470 LYS A 987 CG CD CE NZ REMARK 470 LYS A 988 CG CD CE NZ REMARK 470 GLU A1013 CG CD OE1 OE2 REMARK 470 GLU A1014 CG CD OE1 OE2 REMARK 470 GLN A1017 CG CD OE1 NE2 REMARK 470 GLU A1018 CG CD OE1 OE2 REMARK 470 GLN A1021 CG CD OE1 NE2 REMARK 470 ARG A1024 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1026 CG CD CE NZ REMARK 470 GLN A1028 CG CD OE1 NE2 REMARK 470 LYS A1080 CG CD CE NZ REMARK 470 ARG A1092 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1130 CG CD NE CZ NH1 NH2 REMARK 470 TYR A1134 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A1161 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1165 CG CD CE NZ REMARK 470 LYS B 987 CG CD CE NZ REMARK 470 LYS B 988 CG CD CE NZ REMARK 470 LYS B 989 CG CD CE NZ REMARK 470 ASP B1003 CG OD1 OD2 REMARK 470 GLU B1013 CG CD OE1 OE2 REMARK 470 GLU B1014 CG CD OE1 OE2 REMARK 470 GLN B1017 CG CD OE1 NE2 REMARK 470 GLU B1018 CG CD OE1 OE2 REMARK 470 GLN B1021 CG CD OE1 NE2 REMARK 470 ARG B1024 CG CD NE CZ NH1 NH2 REMARK 470 LYS B1026 CG CD CE NZ REMARK 470 GLN B1028 CG CD OE1 NE2 REMARK 470 LYS B1080 CG CD CE NZ REMARK 470 ARG B1092 CG CD NE CZ NH1 NH2 REMARK 470 TYR B1134 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B1161 CG CD NE CZ NH1 NH2 REMARK 470 LYS B1165 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS B 1149 ZN ZN B 1202 1.29 REMARK 500 C GLY A 1148 H HIS A 1149 1.50 REMARK 500 H THR B 1095 O HOH B 1315 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ3 LYS A 1068 OE1 GLU A 1176 2645 1.51 REMARK 500 HZ1 LYS B 1068 O CYS B 1097 2756 1.57 REMARK 500 HZ2 LYS A 1068 OE1 GLU A 1176 2645 1.59 REMARK 500 NZ LYS A 1068 OE1 GLU A 1176 2645 1.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B1097 CB CYS B1097 SG 0.130 REMARK 500 SER B1133 CB SER B1133 OG -0.084 REMARK 500 CYS B1145 CB CYS B1145 SG -0.179 REMARK 500 PRO B1146 CD PRO B1146 N 0.096 REMARK 500 CYS B1159 CB CYS B1159 SG -0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1062 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 GLY A1148 CA - C - N ANGL. DEV. = 14.4 DEGREES REMARK 500 GLY A1148 O - C - N ANGL. DEV. = -15.0 DEGREES REMARK 500 HIS A1149 C - N - CA ANGL. DEV. = 30.1 DEGREES REMARK 500 CYS B1099 CA - CB - SG ANGL. DEV. = 8.6 DEGREES REMARK 500 ASP B1121 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS A1149 14.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1097 SG REMARK 620 2 CYS A1099 SG 153.7 REMARK 620 3 CYS A1145 SG 89.2 116.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1097 SG REMARK 620 2 CYS B1099 SG 102.5 REMARK 620 3 CYS B1145 SG 110.6 130.2 REMARK 620 4 HIS B1149 ND1 143.8 92.9 81.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3M7 A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3M7 B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WH6 RELATED DB: PDB REMARK 900 SAME NS3/4A PROTEASE AS 4WF8 BUT IS BOUND BY A DIFFERENT INHIBITOR REMARK 900 (ASUNAPREVIR MACROCYCLIC ANALOG) REMARK 900 RELATED ID: 4WF8 RELATED DB: PDB DBREF 4WH8 A 1004 1179 UNP A8DG50 A8DG50_9HEPC 1030 1205 DBREF 4WH8 B 1004 1179 UNP A8DG50 A8DG50_9HEPC 1030 1205 SEQADV 4WH8 HIS A 982 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 MET A 983 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 ALA A 984 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 SER A 985 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 MET A 986 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 LYS A 987 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 LYS A 988 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 LYS A 989 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 GLY A 990 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 SER A 991 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 VAL A 992 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 VAL A 993 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 ILE A 994 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 VAL A 995 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 GLY A 996 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 ARG A 997 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 ILE A 998 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 ASN A 999 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 LEU A 1000 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 SER A 1001 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 GLY A 1002 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 ASP A 1003 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 GLU A 1013 UNP A8DG50 LEU 1039 CONFLICT SEQADV 4WH8 GLU A 1014 UNP A8DG50 LEU 1040 CONFLICT SEQADV 4WH8 GLN A 1017 UNP A8DG50 ILE 1043 CONFLICT SEQADV 4WH8 GLU A 1018 UNP A8DG50 ILE 1044 CONFLICT SEQADV 4WH8 GLN A 1021 UNP A8DG50 LEU 1047 CONFLICT SEQADV 4WH8 THR A 1040 UNP A8DG50 ALA 1066 CONFLICT SEQADV 4WH8 SER A 1047 UNP A8DG50 CYS 1073 CONFLICT SEQADV 4WH8 LEU A 1052 UNP A8DG50 CYS 1078 CONFLICT SEQADV 4WH8 THR A 1072 UNP A8DG50 ILE 1098 CONFLICT SEQADV 4WH8 GLN A 1086 UNP A8DG50 PRO 1112 CONFLICT SEQADV 4WH8 ALA A 1139 UNP A8DG50 SER 1165 CONFLICT SEQADV 4WH8 HIS B 982 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 MET B 983 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 ALA B 984 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 SER B 985 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 MET B 986 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 LYS B 987 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 LYS B 988 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 LYS B 989 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 GLY B 990 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 SER B 991 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 VAL B 992 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 VAL B 993 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 ILE B 994 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 VAL B 995 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 GLY B 996 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 ARG B 997 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 ILE B 998 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 ASN B 999 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 LEU B 1000 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 SER B 1001 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 GLY B 1002 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 ASP B 1003 UNP A8DG50 EXPRESSION TAG SEQADV 4WH8 GLU B 1013 UNP A8DG50 LEU 1039 CONFLICT SEQADV 4WH8 GLU B 1014 UNP A8DG50 LEU 1040 CONFLICT SEQADV 4WH8 GLN B 1017 UNP A8DG50 ILE 1043 CONFLICT SEQADV 4WH8 GLU B 1018 UNP A8DG50 ILE 1044 CONFLICT SEQADV 4WH8 GLN B 1021 UNP A8DG50 LEU 1047 CONFLICT SEQADV 4WH8 THR B 1040 UNP A8DG50 ALA 1066 CONFLICT SEQADV 4WH8 SER B 1047 UNP A8DG50 CYS 1073 CONFLICT SEQADV 4WH8 LEU B 1052 UNP A8DG50 CYS 1078 CONFLICT SEQADV 4WH8 THR B 1072 UNP A8DG50 ILE 1098 CONFLICT SEQADV 4WH8 GLN B 1086 UNP A8DG50 PRO 1112 CONFLICT SEQADV 4WH8 ALA B 1139 UNP A8DG50 SER 1165 CONFLICT SEQRES 1 A 198 HIS MET ALA SER MET LYS LYS LYS GLY SER VAL VAL ILE SEQRES 2 A 198 VAL GLY ARG ILE ASN LEU SER GLY ASP THR ALA TYR ALA SEQRES 3 A 198 GLN GLN THR ARG GLY GLU GLU GLY CYS GLN GLU THR SER SEQRES 4 A 198 GLN THR GLY ARG ASP LYS ASN GLN VAL GLU GLY GLU VAL SEQRES 5 A 198 GLN ILE VAL SER THR ALA THR GLN THR PHE LEU ALA THR SEQRES 6 A 198 SER ILE ASN GLY VAL LEU TRP THR VAL TYR HIS GLY ALA SEQRES 7 A 198 GLY THR ARG THR ILE ALA SER PRO LYS GLY PRO VAL THR SEQRES 8 A 198 GLN MET TYR THR ASN VAL ASP LYS ASP LEU VAL GLY TRP SEQRES 9 A 198 GLN ALA PRO GLN GLY SER ARG SER LEU THR PRO CYS THR SEQRES 10 A 198 CYS GLY SER SER ASP LEU TYR LEU VAL THR ARG HIS ALA SEQRES 11 A 198 ASP VAL ILE PRO VAL ARG ARG ARG GLY ASP SER ARG GLY SEQRES 12 A 198 SER LEU LEU SER PRO ARG PRO ILE SER TYR LEU LYS GLY SEQRES 13 A 198 SER ALA GLY GLY PRO LEU LEU CYS PRO ALA GLY HIS ALA SEQRES 14 A 198 VAL GLY ILE PHE ARG ALA ALA VAL CYS THR ARG GLY VAL SEQRES 15 A 198 ALA LYS ALA VAL ASP PHE ILE PRO VAL GLU SER LEU GLU SEQRES 16 A 198 THR THR MET SEQRES 1 B 198 HIS MET ALA SER MET LYS LYS LYS GLY SER VAL VAL ILE SEQRES 2 B 198 VAL GLY ARG ILE ASN LEU SER GLY ASP THR ALA TYR ALA SEQRES 3 B 198 GLN GLN THR ARG GLY GLU GLU GLY CYS GLN GLU THR SER SEQRES 4 B 198 GLN THR GLY ARG ASP LYS ASN GLN VAL GLU GLY GLU VAL SEQRES 5 B 198 GLN ILE VAL SER THR ALA THR GLN THR PHE LEU ALA THR SEQRES 6 B 198 SER ILE ASN GLY VAL LEU TRP THR VAL TYR HIS GLY ALA SEQRES 7 B 198 GLY THR ARG THR ILE ALA SER PRO LYS GLY PRO VAL THR SEQRES 8 B 198 GLN MET TYR THR ASN VAL ASP LYS ASP LEU VAL GLY TRP SEQRES 9 B 198 GLN ALA PRO GLN GLY SER ARG SER LEU THR PRO CYS THR SEQRES 10 B 198 CYS GLY SER SER ASP LEU TYR LEU VAL THR ARG HIS ALA SEQRES 11 B 198 ASP VAL ILE PRO VAL ARG ARG ARG GLY ASP SER ARG GLY SEQRES 12 B 198 SER LEU LEU SER PRO ARG PRO ILE SER TYR LEU LYS GLY SEQRES 13 B 198 SER ALA GLY GLY PRO LEU LEU CYS PRO ALA GLY HIS ALA SEQRES 14 B 198 VAL GLY ILE PHE ARG ALA ALA VAL CYS THR ARG GLY VAL SEQRES 15 B 198 ALA LYS ALA VAL ASP PHE ILE PRO VAL GLU SER LEU GLU SEQRES 16 B 198 THR THR MET HET 3M7 A1201 98 HET SO4 A1202 5 HET SO4 A1203 5 HET ZN A1204 1 HET 3M7 B1201 98 HET ZN B1202 1 HETNAM 3M7 TERT-BUTYL [(2R,6S,12Z,13AS,14AR,16AS)-2-[(7-CHLORO-4- HETNAM 2 3M7 METHOXYISOQUINOLIN-1-YL)OXY]-14A- HETNAM 3 3M7 {[CYCLOPROPYL(DIHYDROXY)-LAMBDA~4~- HETNAM 4 3M7 SULFANYL]CARBAMOYL}-5,16-DIOXO-1,2,3,5,6,7,8,9,10,11, HETNAM 5 3M7 13A,14,14A,15,16,16A- HETNAM 6 3M7 HEXADECAHYDROCYCLOPROPA[E]PYRROLO[1,2-A][1, HETNAM 7 3M7 4]DIAZACYCLOPENTADECIN-6-YL]CARBAMATE HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION FORMUL 3 3M7 2(C36 H48 CL N5 O9 S) FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 ZN 2(ZN 2+) FORMUL 9 HOH *60(H2 O) HELIX 1 AA1 GLY A 1012 GLY A 1023 1 12 HELIX 2 AA2 TYR A 1056 GLY A 1060 1 5 HELIX 3 AA3 SER A 1133 LEU A 1135 5 3 HELIX 4 AA4 VAL A 1172 MET A 1179 1 8 HELIX 5 AA5 GLY B 1012 GLY B 1023 1 12 HELIX 6 AA6 VAL B 1055 GLY B 1060 1 6 HELIX 7 AA7 SER B 1133 LEU B 1135 5 3 HELIX 8 AA8 VAL B 1172 MET B 1179 1 8 SHEET 1 AA1 7 TYR A1006 GLN A1009 0 SHEET 2 AA1 7 VAL A 993 ASN A 999 -1 N ASN A 999 O TYR A1006 SHEET 3 AA1 7 VAL A1033 SER A1037 -1 O ILE A1035 N VAL A 995 SHEET 4 AA1 7 THR A1042 ILE A1048 -1 O ALA A1045 N GLN A1034 SHEET 5 AA1 7 VAL A1051 VAL A1055 -1 O TRP A1053 N THR A1046 SHEET 6 AA1 7 LEU A1082 GLN A1086 -1 O TRP A1085 N LEU A1052 SHEET 7 AA1 7 TYR A1075 ASN A1077 -1 N ASN A1077 O LEU A1082 SHEET 1 AA2 7 ASP A1103 VAL A1107 0 SHEET 2 AA2 7 VAL A1113 ARG A1118 -1 O ILE A1114 N LEU A1106 SHEET 3 AA2 7 ARG A1123 PRO A1131 -1 O SER A1125 N ARG A1117 SHEET 4 AA2 7 VAL A1163 PRO A1171 -1 O VAL A1167 N GLY A1124 SHEET 5 AA2 7 ALA A1150 THR A1160 -1 N ALA A1156 O ASP A1168 SHEET 6 AA2 7 PRO A1142 LEU A1144 -1 N LEU A1143 O VAL A1151 SHEET 7 AA2 7 ASP A1103 VAL A1107 -1 N TYR A1105 O LEU A1144 SHEET 1 AA3 7 TYR B1006 GLN B1009 0 SHEET 2 AA3 7 VAL B 993 ASN B 999 -1 N ASN B 999 O TYR B1006 SHEET 3 AA3 7 VAL B1033 SER B1037 -1 O SER B1037 N VAL B 993 SHEET 4 AA3 7 THR B1042 ILE B1048 -1 O ALA B1045 N GLN B1034 SHEET 5 AA3 7 VAL B1051 THR B1054 -1 O TRP B1053 N THR B1046 SHEET 6 AA3 7 LEU B1082 GLN B1086 -1 O TRP B1085 N LEU B1052 SHEET 7 AA3 7 TYR B1075 ASN B1077 -1 N ASN B1077 O LEU B1082 SHEET 1 AA4 7 ASP B1103 VAL B1107 0 SHEET 2 AA4 7 VAL B1113 ARG B1118 -1 O ILE B1114 N LEU B1106 SHEET 3 AA4 7 ARG B1123 PRO B1131 -1 O SER B1125 N ARG B1117 SHEET 4 AA4 7 VAL B1163 PRO B1171 -1 O VAL B1167 N GLY B1124 SHEET 5 AA4 7 ALA B1150 THR B1160 -1 N ALA B1156 O ASP B1168 SHEET 6 AA4 7 PRO B1142 LEU B1144 -1 N LEU B1143 O VAL B1151 SHEET 7 AA4 7 ASP B1103 VAL B1107 -1 N TYR B1105 O LEU B1144 LINK SG CYS A1097 ZN ZN A1204 1555 1555 2.49 LINK SG CYS A1099 ZN ZN A1204 1555 1555 2.35 LINK SG CYS A1145 ZN ZN A1204 1555 1555 2.94 LINK SG CYS B1097 ZN ZN B1202 1555 1555 2.32 LINK SG CYS B1099 ZN ZN B1202 1555 1555 2.17 LINK SG CYS B1145 ZN ZN B1202 1555 1555 2.49 LINK ND1 HIS B1149 ZN ZN B1202 1555 1555 2.32 SITE 1 AC1 15 GLN A1041 PHE A1043 HIS A1057 GLY A1058 SITE 2 AC1 15 VAL A1078 ASP A1081 LEU A1135 LYS A1136 SITE 3 AC1 15 GLY A1137 SER A1138 ALA A1139 PHE A1154 SITE 4 AC1 15 ARG A1155 ALA A1156 ALA A1157 SITE 1 AC2 5 TYR A1006 GLN A1008 HOH A1302 HOH A1306 SITE 2 AC2 5 TYR B1056 SITE 1 AC3 5 TYR A1056 HOH A1314 HOH A1317 TYR B1006 SITE 2 AC3 5 GLN B1008 SITE 1 AC4 4 CYS A1097 CYS A1099 CYS A1145 HIS A1149 SITE 1 AC5 14 GLN B1041 PHE B1043 HIS B1057 VAL B1078 SITE 2 AC5 14 ASP B1081 LEU B1135 LYS B1136 GLY B1137 SITE 3 AC5 14 SER B1138 ALA B1139 PHE B1154 ARG B1155 SITE 4 AC5 14 ALA B1156 ALA B1157 SITE 1 AC6 4 CYS B1097 CYS B1099 CYS B1145 HIS B1149 CRYST1 58.412 54.975 59.859 90.00 90.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017120 0.000000 0.000028 0.00000 SCALE2 0.000000 0.018190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016706 0.00000 MASTER 373 0 6 8 28 0 14 6 0 0 0 32 END