HEADER HYDROLASE 05-SEP-14 4WCK TITLE CRYSTAL STRUCTURE OF APO CELL SHAPE DETERMINANT PROTEIN CSD4 FROM TITLE 2 HELICOBACTER PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL SECRETED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 563041; SOURCE 4 STRAIN: G27; SOURCE 5 GENE: HPG27_353; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B(MOD) KEYWDS MIXED ALPHA BETA SANDWICH, CARBOXYPEPTIDASE, M14, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.C.CHAN,M.E.MURPHY REVDAT 5 22-NOV-17 4WCK 1 SOURCE JRNL REMARK REVDAT 4 25-FEB-15 4WCK 1 REMARK REVDAT 3 18-FEB-15 4WCK 1 JRNL REVDAT 2 31-DEC-14 4WCK 1 JRNL REVDAT 1 24-DEC-14 4WCK 0 JRNL AUTH A.C.CHAN,K.M.BLAIR,Y.LIU,E.FRIRDICH,E.C.GAYNOR,M.E.TANNER, JRNL AUTH 2 N.R.SALAMA,M.E.MURPHY JRNL TITL HELICAL SHAPE OF HELICOBACTER PYLORI REQUIRES AN ATYPICAL JRNL TITL 2 GLUTAMINE AS A ZINC LIGAND IN THE CARBOXYPEPTIDASE CSD4. JRNL REF J.BIOL.CHEM. V. 290 3622 2015 JRNL REFN ESSN 1083-351X JRNL PMID 25505267 JRNL DOI 10.1074/JBC.M114.624734 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 197471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 9858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0083 - 4.3487 1.00 6228 330 0.1517 0.1652 REMARK 3 2 4.3487 - 3.4522 1.00 6269 325 0.1297 0.1461 REMARK 3 3 3.4522 - 3.0159 1.00 6244 321 0.1410 0.1664 REMARK 3 4 3.0159 - 2.7402 1.00 6283 336 0.1371 0.1469 REMARK 3 5 2.7402 - 2.5438 1.00 6224 320 0.1314 0.1453 REMARK 3 6 2.5438 - 2.3939 1.00 6265 333 0.1324 0.1428 REMARK 3 7 2.3939 - 2.2740 1.00 6289 332 0.1245 0.1320 REMARK 3 8 2.2740 - 2.1750 1.00 6237 331 0.1291 0.1445 REMARK 3 9 2.1750 - 2.0913 1.00 6247 321 0.1264 0.1452 REMARK 3 10 2.0913 - 2.0191 1.00 6252 327 0.1326 0.1510 REMARK 3 11 2.0191 - 1.9560 1.00 6277 334 0.1309 0.1475 REMARK 3 12 1.9560 - 1.9001 1.00 6211 328 0.1310 0.1497 REMARK 3 13 1.9001 - 1.8500 1.00 6275 328 0.1325 0.1593 REMARK 3 14 1.8500 - 1.8049 1.00 6279 325 0.1317 0.1599 REMARK 3 15 1.8049 - 1.7639 1.00 6219 323 0.1343 0.1695 REMARK 3 16 1.7639 - 1.7263 1.00 6313 332 0.1367 0.1673 REMARK 3 17 1.7263 - 1.6918 1.00 6269 333 0.1386 0.1759 REMARK 3 18 1.6918 - 1.6599 1.00 6226 328 0.1442 0.1646 REMARK 3 19 1.6599 - 1.6302 1.00 6280 331 0.1500 0.1624 REMARK 3 20 1.6302 - 1.6026 1.00 6251 326 0.1502 0.1814 REMARK 3 21 1.6026 - 1.5767 1.00 6231 330 0.1535 0.1523 REMARK 3 22 1.5767 - 1.5525 1.00 6257 333 0.1608 0.1995 REMARK 3 23 1.5525 - 1.5297 1.00 6248 327 0.1630 0.1712 REMARK 3 24 1.5297 - 1.5081 1.00 6290 331 0.1639 0.1757 REMARK 3 25 1.5081 - 1.4877 1.00 6280 329 0.1776 0.1962 REMARK 3 26 1.4877 - 1.4684 1.00 6197 326 0.1913 0.2258 REMARK 3 27 1.4684 - 1.4500 1.00 6237 333 0.1985 0.1953 REMARK 3 28 1.4500 - 1.4326 1.00 6322 334 0.2123 0.2026 REMARK 3 29 1.4326 - 1.4159 1.00 6269 329 0.2401 0.2638 REMARK 3 30 1.4159 - 1.4000 0.99 6144 322 0.2479 0.2830 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3581 REMARK 3 ANGLE : 1.486 4852 REMARK 3 CHIRALITY : 0.091 523 REMARK 3 PLANARITY : 0.008 638 REMARK 3 DIHEDRAL : 12.720 1373 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 20:267 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0922 33.7457 -3.0370 REMARK 3 T TENSOR REMARK 3 T11: 0.0639 T22: 0.0559 REMARK 3 T33: 0.0798 T12: 0.0007 REMARK 3 T13: 0.0047 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.3437 L22: 0.8729 REMARK 3 L33: 1.2000 L12: -0.0132 REMARK 3 L13: -0.0132 L23: -0.3109 REMARK 3 S TENSOR REMARK 3 S11: 0.0544 S12: 0.0953 S13: 0.0387 REMARK 3 S21: -0.0580 S22: -0.0195 S23: 0.0210 REMARK 3 S31: 0.0733 S32: -0.0721 S33: -0.0160 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 268:438 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3092 25.6412 34.9407 REMARK 3 T TENSOR REMARK 3 T11: 0.1391 T22: 0.1669 REMARK 3 T33: 0.1030 T12: -0.0150 REMARK 3 T13: -0.0027 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.3779 L22: 0.4729 REMARK 3 L33: 3.2511 L12: 0.1031 REMARK 3 L13: 0.8067 L23: 0.1796 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: -0.1653 S13: 0.0446 REMARK 3 S21: 0.0996 S22: -0.0109 S23: 0.0219 REMARK 3 S31: 0.1269 S32: -0.2694 S33: -0.0051 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WCK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203368. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 197473 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 42.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-20% PEG 3350, 0-0.1 MM TRIS, AND REMARK 280 0.3-0.4 M NAI, PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.64000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.76500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.76500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.64000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 LEU A 13 REMARK 465 VAL A 14 REMARK 465 PRO A 15 REMARK 465 ARG A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 327 O HOH A 917 2.15 REMARK 500 O HOH A 910 O HOH A 977 2.15 REMARK 500 O HOH A 792 O HOH A 956 2.16 REMARK 500 O HOH A 796 O HOH A 814 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 189 CE1 TYR A 189 CZ -0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 97 -119.34 -111.24 REMARK 500 ASN A 267 51.29 -96.50 REMARK 500 SER A 276 -135.73 52.35 REMARK 500 LYS A 319 -120.02 56.12 REMARK 500 ASN A 354 -2.04 78.88 REMARK 500 GLU A 369 -58.96 -133.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 518 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 519 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 520 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 522 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 523 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 524 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 525 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 526 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 527 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 528 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 529 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 530 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 531 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 532 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue API A 533 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WCL RELATED DB: PDB REMARK 900 RELATED ID: 4WCM RELATED DB: PDB REMARK 900 RELATED ID: 4WCN RELATED DB: PDB DBREF 4WCK A 23 438 UNP B5ZAD9 B5ZAD9_HELPG 23 438 SEQADV 4WCK MET A 0 UNP B5ZAD9 INITIATING METHIONINE SEQADV 4WCK GLY A 1 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK SER A 2 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK SER A 3 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK HIS A 4 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK HIS A 5 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK HIS A 6 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK HIS A 7 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK HIS A 8 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK HIS A 9 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK SER A 10 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK SER A 11 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK GLY A 12 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK LEU A 13 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK VAL A 14 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK PRO A 15 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK ARG A 16 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK GLY A 17 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK SER A 18 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK SER A 19 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK MET A 20 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK GLU A 21 UNP B5ZAD9 EXPRESSION TAG SEQADV 4WCK MET A 22 UNP B5ZAD9 EXPRESSION TAG SEQRES 1 A 439 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 439 LEU VAL PRO ARG GLY SER SER MET GLU MET ILE GLU LYS SEQRES 3 A 439 ALA PRO THR ASP LEU GLU ASP ARG ASP LYS ALA PRO HIS SEQRES 4 A 439 LEU LEU LEU LEU ALA GLY ILE GLN GLY ASP GLU PRO GLY SEQRES 5 A 439 GLY PHE ASN ALA THR ASN LEU PHE LEU MET HIS TYR SER SEQRES 6 A 439 VAL LEU LYS GLY LEU VAL GLU VAL VAL PRO VAL LEU ASN SEQRES 7 A 439 LYS PRO SER MET LEU ARG ASN HIS ARG GLY LEU TYR GLY SEQRES 8 A 439 ASP MET ASN ARG LYS PHE ALA ALA LEU ASP LYS LYS ASP SEQRES 9 A 439 PRO GLU TYR PRO THR ILE GLN GLU ILE LYS SER LEU ILE SEQRES 10 A 439 ALA LYS PRO ASN ILE ASP ALA VAL LEU HIS LEU HIS ASP SEQRES 11 A 439 GLY GLY GLY TYR TYR ARG PRO VAL TYR VAL ASP ALA MET SEQRES 12 A 439 LEU ASN PRO LYS ARG TRP GLY ASN CYS PHE ILE ILE ASP SEQRES 13 A 439 GLN ASP GLU VAL LYS GLY ALA LYS PHE PRO ASN LEU LEU SEQRES 14 A 439 ALA PHE ALA ASN ASN THR ILE GLU SER ILE ASN ALA HIS SEQRES 15 A 439 LEU LEU HIS PRO ILE GLU GLU TYR HIS LEU LYS ASN THR SEQRES 16 A 439 ARG THR ALA GLN GLY ASP THR GLU MET GLN LYS ALA LEU SEQRES 17 A 439 THR PHE TYR ALA ILE ASN GLN LYS LYS SER ALA PHE ALA SEQRES 18 A 439 ASN GLU ALA SER LYS GLU LEU PRO LEU ALA SER ARG VAL SEQRES 19 A 439 PHE TYR HIS LEU GLN ALA ILE GLU GLY LEU LEU ASN GLN SEQRES 20 A 439 LEU ASN ILE PRO PHE LYS ARG ASP PHE GLU LEU ASN PRO SEQRES 21 A 439 SER SER VAL HIS ALA LEU ILE ASN ASP LYS SER LEU TRP SEQRES 22 A 439 ALA LYS ILE SER SER LEU PRO LYS ILE PRO LEU PHE ASN SEQRES 23 A 439 LEU ARG PRO ARG LEU ASN HIS PHE PRO LEU PRO HIS ASN SEQRES 24 A 439 THR LYS ILE PRO GLN ILE PRO ILE GLU SER ASN ALA TYR SEQRES 25 A 439 ILE VAL GLY LEU VAL LYS ASN LYS GLN GLU VAL PHE LEU SEQRES 26 A 439 LYS TYR GLY ASN LYS LEU MET THR ARG LEU SER PRO PHE SEQRES 27 A 439 TYR ILE GLU PHE ASP PRO SER LEU GLU GLU VAL LYS MET SEQRES 28 A 439 GLN ILE ASP ASN LYS ASP GLN MET VAL LYS ILE GLY SER SEQRES 29 A 439 VAL VAL GLU VAL LYS GLU SER PHE TYR ILE HIS ALA MET SEQRES 30 A 439 ASP ASN ILE ARG ALA ASN VAL ILE GLY PHE SER VAL SER SEQRES 31 A 439 ASN GLU ASN LYS PRO ASN GLU ALA GLY TYR THR ILE ARG SEQRES 32 A 439 PHE LYS ASP PHE GLN LYS ARG PHE SER LEU ASP LYS GLN SEQRES 33 A 439 GLU ARG ILE TYR ARG ILE GLU PHE TYR LYS ASN ASN ALA SEQRES 34 A 439 PHE SER GLY MET ILE LEU VAL LYS PHE VAL HET IOD A 501 1 HET IOD A 502 2 HET IOD A 503 1 HET IOD A 504 2 HET IOD A 505 1 HET IOD A 506 2 HET IOD A 507 1 HET IOD A 508 1 HET IOD A 509 1 HET IOD A 510 1 HET IOD A 511 1 HET IOD A 512 1 HET IOD A 513 1 HET IOD A 514 1 HET IOD A 515 2 HET IOD A 516 1 HET IOD A 517 1 HET IOD A 518 1 HET IOD A 519 1 HET IOD A 520 1 HET IOD A 521 1 HET IOD A 522 1 HET IOD A 523 1 HET IOD A 524 1 HET IOD A 525 1 HET IOD A 526 1 HET IOD A 527 1 HET IOD A 528 1 HET IOD A 529 1 HET IOD A 530 1 HET IOD A 531 1 HET IOD A 532 1 HET API A 533 25 HETNAM IOD IODIDE ION HETNAM API 2,6-DIAMINOPIMELIC ACID FORMUL 2 IOD 32(I 1-) FORMUL 34 API C7 H14 N2 O4 FORMUL 35 HOH *466(H2 O) HELIX 1 AA1 ASP A 29 ALA A 36 5 8 HELIX 2 AA2 GLU A 49 HIS A 62 1 14 HELIX 3 AA3 ASN A 77 ARG A 83 1 7 HELIX 4 AA4 ASP A 91 LYS A 95 5 5 HELIX 5 AA5 GLU A 105 ALA A 117 1 13 HELIX 6 AA6 ASN A 166 ALA A 180 1 15 HELIX 7 AA7 HIS A 184 GLU A 188 5 5 HELIX 8 AA8 ARG A 195 GLY A 199 5 5 HELIX 9 AA9 GLU A 202 LYS A 205 5 4 HELIX 10 AB1 ALA A 206 GLN A 214 1 9 HELIX 11 AB2 PRO A 228 ASN A 248 1 21 HELIX 12 AB3 ASN A 258 ASN A 267 1 10 HELIX 13 AB4 LYS A 300 ILE A 304 5 5 HELIX 14 AB5 LYS A 404 PHE A 406 5 3 HELIX 15 AB6 GLN A 407 SER A 411 5 5 SHEET 1 AA1 7 ILE A 23 LYS A 25 0 SHEET 2 AA1 7 LEU A 69 VAL A 73 -1 O VAL A 72 N ILE A 23 SHEET 3 AA1 7 HIS A 38 LEU A 42 1 N LEU A 41 O GLU A 71 SHEET 4 AA1 7 ALA A 123 GLY A 130 1 O LEU A 127 N LEU A 42 SHEET 5 AA1 7 SER A 217 SER A 224 1 O SER A 217 N VAL A 124 SHEET 6 AA1 7 CYS A 151 ILE A 154 -1 N ILE A 153 O ALA A 220 SHEET 7 AA1 7 HIS A 190 ASN A 193 1 O LYS A 192 N ILE A 154 SHEET 1 AA2 2 TYR A 63 VAL A 65 0 SHEET 2 AA2 2 PHE A 251 ARG A 253 -1 O LYS A 252 N SER A 64 SHEET 1 AA3 2 TYR A 133 TYR A 134 0 SHEET 2 AA3 2 LEU A 143 ASN A 144 1 O ASN A 144 N TYR A 133 SHEET 1 AA4 3 ILE A 281 PRO A 282 0 SHEET 2 AA4 3 TRP A 272 ILE A 275 -1 N ALA A 273 O ILE A 281 SHEET 3 AA4 3 ILE A 306 SER A 308 -1 O GLU A 307 N LYS A 274 SHEET 1 AA5 4 ARG A 289 PRO A 296 0 SHEET 2 AA5 4 LYS A 329 ILE A 339 1 O SER A 335 N LEU A 290 SHEET 3 AA5 4 GLU A 321 TYR A 326 -1 N VAL A 322 O LEU A 334 SHEET 4 AA5 4 VAL A 313 ASN A 318 -1 N VAL A 316 O PHE A 323 SHEET 1 AA6 4 LYS A 355 LYS A 360 0 SHEET 2 AA6 4 GLU A 347 ILE A 352 -1 N VAL A 348 O VAL A 359 SHEET 3 AA6 4 SER A 370 ILE A 373 -1 O TYR A 372 N GLN A 351 SHEET 4 AA6 4 THR A 400 ARG A 402 -1 O ILE A 401 N PHE A 371 SHEET 1 AA7 4 VAL A 364 VAL A 367 0 SHEET 2 AA7 4 ALA A 428 PHE A 437 1 O LEU A 434 N VAL A 365 SHEET 3 AA7 4 ILE A 418 LYS A 425 -1 N PHE A 423 O SER A 430 SHEET 4 AA7 4 ARG A 380 VAL A 383 -1 N ASN A 382 O GLU A 422 SITE 1 AC1 2 ARG A 135 LYS A 319 SITE 1 AC2 4 HIS A 263 ASN A 267 LYS A 329 HOH A 738 SITE 1 AC3 1 LYS A 317 SITE 1 AC4 2 LYS A 325 HOH A 838 SITE 1 AC5 1 ARG A 83 SITE 1 AC6 2 HIS A 38 HOH A 929 SITE 1 AC7 2 LYS A 163 HOH A 897 SITE 1 AC8 2 THR A 400 HOH A 677 SITE 1 AC9 1 PHE A 341 SITE 1 AD1 5 GLN A 156 ASP A 157 ASN A 193 ARG A 195 SITE 2 AD1 5 GLN A 198 SITE 1 AD2 2 ILE A 301 LYS A 317 SITE 1 AD3 1 LYS A 146 SITE 1 AD4 2 SER A 64 HOH A 787 SITE 1 AD5 2 ARG A 380 ASN A 427 SITE 1 AD6 2 GLN A 156 LYS A 160 SITE 1 AD7 2 GLU A 158 LYS A 404 SITE 1 AD8 1 IOD A 527 SITE 1 AD9 3 LYS A 252 ARG A 253 HOH A 779 SITE 1 AE1 1 SER A 260 SITE 1 AE2 3 PRO A 228 SER A 231 IOD A 524 SITE 1 AE3 1 SER A 19 SITE 1 AE4 2 ARG A 147 HOH A 841 SITE 1 AE5 3 SER A 344 LYS A 425 HOH A 931 SITE 1 AE6 1 LYS A 300 SITE 1 AE7 1 GLN A 303 SITE 1 AE8 14 ASN A 93 ARG A 94 HIS A 126 HIS A 128 SITE 2 AE8 14 MET A 203 ALA A 206 LEU A 207 THR A 208 SITE 3 AE8 14 ALA A 220 GLU A 222 HOH A 728 HOH A 750 SITE 4 AE8 14 HOH A 942 HOH A 956 CRYST1 53.280 66.780 145.530 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018769 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014975 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006871 0.00000 MASTER 440 0 33 15 26 0 30 6 0 0 0 34 END