HEADER TRANSFERASE/TRANSFERASE INHIBITOR 28-AUG-14 4WA9 TITLE THE CRYSTAL STRUCTURE OF HUMAN ABL1 WILD TYPE KINASE DOMAIN IN COMPLEX TITLE 2 WITH AXITINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ABL1; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: UNP RESIDUES 246-512; COMPND 5 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 1,ABELSON COMPND 6 TYROSINE-PROTEIN KINASE 1,PROTO-ONCOGENE C-ABL,P150; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABL1, ABL, JTK7; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE, KINASE INHIBITOR, AXITINIB, ACTIVATION LOOP, DFG-OUT, KEYWDS 2 TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.JOHNSON,M.MCTIGUE,C.N.CRONIN REVDAT 4 22-NOV-17 4WA9 1 SOURCE JRNL REMARK REVDAT 3 18-MAR-15 4WA9 1 JRNL REVDAT 2 04-MAR-15 4WA9 1 JRNL REVDAT 1 11-FEB-15 4WA9 0 JRNL AUTH T.PEMOVSKA,E.JOHNSON,M.KONTRO,G.A.REPASKY,J.CHEN,P.WELLS, JRNL AUTH 2 C.N.CRONIN,M.MCTIGUE,O.KALLIONIEMI,K.PORKKA,B.W.MURRAY, JRNL AUTH 3 K.WENNERBERG JRNL TITL AXITINIB EFFECTIVELY INHIBITS BCR-ABL1(T315I) WITH A JRNL TITL 2 DISTINCT BINDING CONFORMATION. JRNL REF NATURE V. 519 102 2015 JRNL REFN ESSN 1476-4687 JRNL PMID 25686603 JRNL DOI 10.1038/NATURE14119 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1295) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 41498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.3001 - 5.4237 0.94 2730 139 0.1740 0.2223 REMARK 3 2 5.4237 - 4.3056 0.96 2627 152 0.1528 0.1856 REMARK 3 3 4.3056 - 3.7616 0.96 2607 136 0.1476 0.1760 REMARK 3 4 3.7616 - 3.4177 0.98 2649 138 0.1552 0.1742 REMARK 3 5 3.4177 - 3.1728 0.99 2649 128 0.1824 0.2127 REMARK 3 6 3.1728 - 2.9857 0.99 2634 130 0.1811 0.2413 REMARK 3 7 2.9857 - 2.8362 0.97 2548 159 0.1809 0.2088 REMARK 3 8 2.8362 - 2.7128 0.99 2638 139 0.1824 0.2494 REMARK 3 9 2.7128 - 2.6083 0.99 2630 129 0.1844 0.2292 REMARK 3 10 2.6083 - 2.5183 0.99 2663 124 0.1896 0.2807 REMARK 3 11 2.5183 - 2.4396 0.99 2642 132 0.1925 0.2340 REMARK 3 12 2.4396 - 2.3699 0.98 2555 153 0.1997 0.2238 REMARK 3 13 2.3699 - 2.3075 0.99 2602 157 0.2050 0.2654 REMARK 3 14 2.3075 - 2.2512 0.99 2603 159 0.2206 0.2712 REMARK 3 15 2.2512 - 2.2000 0.99 2630 116 0.2368 0.2903 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4462 REMARK 3 ANGLE : 1.142 6038 REMARK 3 CHIRALITY : 0.080 637 REMARK 3 PLANARITY : 0.004 763 REMARK 3 DIHEDRAL : 16.679 1643 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 14.3513 136.9556 32.2230 REMARK 3 T TENSOR REMARK 3 T11: 0.2200 T22: 0.2318 REMARK 3 T33: 0.2371 T12: -0.0056 REMARK 3 T13: 0.0022 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 0.0880 L22: 0.4577 REMARK 3 L33: 0.6406 L12: 0.2249 REMARK 3 L13: 0.2087 L23: 0.4685 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: -0.0133 S13: 0.0212 REMARK 3 S21: -0.0527 S22: -0.0257 S23: 0.0079 REMARK 3 S31: -0.0798 S32: -0.0165 S33: 0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WA9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41543 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 111.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM CHLORIDE 20.0 %W/V PEG REMARK 280 3350 5.0 %V/V ETHYLENE GLYCOL, PH 7.4, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.90300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.44050 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.90300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.44050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 227 REMARK 465 SER B 228 REMARK 465 SER B 229 REMARK 465 PRO B 230 REMARK 465 ASN B 231 REMARK 465 TYR B 232 REMARK 465 GLU B 509 REMARK 465 LEU B 510 REMARK 465 GLY B 511 REMARK 465 LYS B 512 REMARK 465 GLY A 227 REMARK 465 SER A 228 REMARK 465 SER A 229 REMARK 465 PRO A 230 REMARK 465 ASN A 231 REMARK 465 TYR A 232 REMARK 465 ASP A 233 REMARK 465 LYS A 234 REMARK 465 TRP A 235 REMARK 465 THR A 272 REMARK 465 LEU A 273 REMARK 465 LYS A 274 REMARK 465 GLU A 275 REMARK 465 ASP A 276 REMARK 465 THR A 277 REMARK 465 MET A 278 REMARK 465 GLU A 279 REMARK 465 VAL A 280 REMARK 465 GLU A 281 REMARK 465 GLU A 282 REMARK 465 PHE A 283 REMARK 465 LEU A 284 REMARK 465 LYS A 285 REMARK 465 GLU A 286 REMARK 465 ALA A 287 REMARK 465 ALA A 288 REMARK 465 VAL A 289 REMARK 465 MET A 290 REMARK 465 LYS A 291 REMARK 465 PRO A 310 REMARK 465 PHE A 311 REMARK 465 TYR A 312 REMARK 465 GLU A 505 REMARK 465 VAL A 506 REMARK 465 GLU A 507 REMARK 465 LYS A 508 REMARK 465 GLU A 509 REMARK 465 LEU A 510 REMARK 465 GLY A 511 REMARK 465 LYS A 512 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 238 CG CD OE1 OE2 REMARK 470 ARG B 307 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 470 HIS B 396 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 505 CG CD OE1 OE2 REMARK 470 LYS B 508 CG CD CE NZ REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 CYS A 305 SG REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 PRO A 309 CG CD REMARK 470 ASP A 504 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 363 ND2 ASN B 368 1.82 REMARK 500 O HOH A 9116 O HOH A 9143 1.86 REMARK 500 O HOH A 9242 O HOH A 9261 1.89 REMARK 500 NE ARG B 332 O HOH B 9187 1.89 REMARK 500 O LEU A 248 O HOH A 9239 1.90 REMARK 500 NH1 ARG A 239 O GLU A 308 1.95 REMARK 500 O HOH A 9204 O HOH A 9219 1.99 REMARK 500 NZ LYS B 271 OE1 GLU B 286 2.06 REMARK 500 O HOH A 9174 O HOH A 9191 2.07 REMARK 500 O HOH A 9221 O HOH A 9268 2.08 REMARK 500 O HOH B 9197 O HOH B 9219 2.08 REMARK 500 O HOH B 9197 O HOH B 9218 2.08 REMARK 500 O HOH A 9157 O HOH A 9173 2.08 REMARK 500 O HOH A 9134 O HOH A 9140 2.11 REMARK 500 O HOH A 9269 O HOH A 9270 2.13 REMARK 500 O HOH A 9106 O HOH A 9135 2.14 REMARK 500 O HOH B 9155 O HOH B 9185 2.15 REMARK 500 O HOH B 9185 O HOH B 9213 2.16 REMARK 500 O HOH A 9170 O HOH A 9212 2.18 REMARK 500 O HOH A 9128 O HOH A 9191 2.18 REMARK 500 O HOH B 9178 O HOH B 9179 2.18 REMARK 500 O HOH A 9248 O HOH A 9261 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 9130 O HOH A 9142 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 245 -144.75 -119.70 REMARK 500 LYS B 274 162.48 -44.10 REMARK 500 ARG B 307 10.50 -143.91 REMARK 500 ASP B 363 57.87 -144.83 REMARK 500 GLU B 507 45.31 -78.43 REMARK 500 LYS A 294 113.02 -160.92 REMARK 500 ASP A 363 55.78 -149.09 REMARK 500 TYR A 440 63.96 37.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B9197 DISTANCE = 7.52 ANGSTROMS REMARK 525 HOH B9218 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH B9219 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A9238 DISTANCE = 8.07 ANGSTROMS REMARK 525 HOH A9263 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A9267 DISTANCE = 6.21 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AXI B 9000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AXI A 9000 DBREF 4WA9 B 246 512 UNP P00519 ABL1_HUMAN 246 512 DBREF 4WA9 A 246 512 UNP P00519 ABL1_HUMAN 246 512 SEQADV 4WA9 GLY B 227 UNP P00519 EXPRESSION TAG SEQADV 4WA9 SER B 228 UNP P00519 EXPRESSION TAG SEQADV 4WA9 SER B 229 UNP P00519 EXPRESSION TAG SEQADV 4WA9 PRO B 230 UNP P00519 EXPRESSION TAG SEQADV 4WA9 ASN B 231 UNP P00519 EXPRESSION TAG SEQADV 4WA9 TYR B 232 UNP P00519 EXPRESSION TAG SEQADV 4WA9 ASP B 233 UNP P00519 EXPRESSION TAG SEQADV 4WA9 LYS B 234 UNP P00519 EXPRESSION TAG SEQADV 4WA9 TRP B 235 UNP P00519 EXPRESSION TAG SEQADV 4WA9 GLU B 236 UNP P00519 EXPRESSION TAG SEQADV 4WA9 MET B 237 UNP P00519 EXPRESSION TAG SEQADV 4WA9 GLU B 238 UNP P00519 EXPRESSION TAG SEQADV 4WA9 ARG B 239 UNP P00519 EXPRESSION TAG SEQADV 4WA9 THR B 240 UNP P00519 EXPRESSION TAG SEQADV 4WA9 ASP B 241 UNP P00519 EXPRESSION TAG SEQADV 4WA9 ILE B 242 UNP P00519 EXPRESSION TAG SEQADV 4WA9 THR B 243 UNP P00519 EXPRESSION TAG SEQADV 4WA9 MET B 244 UNP P00519 EXPRESSION TAG SEQADV 4WA9 LYS B 245 UNP P00519 EXPRESSION TAG SEQADV 4WA9 GLY A 227 UNP P00519 EXPRESSION TAG SEQADV 4WA9 SER A 228 UNP P00519 EXPRESSION TAG SEQADV 4WA9 SER A 229 UNP P00519 EXPRESSION TAG SEQADV 4WA9 PRO A 230 UNP P00519 EXPRESSION TAG SEQADV 4WA9 ASN A 231 UNP P00519 EXPRESSION TAG SEQADV 4WA9 TYR A 232 UNP P00519 EXPRESSION TAG SEQADV 4WA9 ASP A 233 UNP P00519 EXPRESSION TAG SEQADV 4WA9 LYS A 234 UNP P00519 EXPRESSION TAG SEQADV 4WA9 TRP A 235 UNP P00519 EXPRESSION TAG SEQADV 4WA9 GLU A 236 UNP P00519 EXPRESSION TAG SEQADV 4WA9 MET A 237 UNP P00519 EXPRESSION TAG SEQADV 4WA9 GLU A 238 UNP P00519 EXPRESSION TAG SEQADV 4WA9 ARG A 239 UNP P00519 EXPRESSION TAG SEQADV 4WA9 THR A 240 UNP P00519 EXPRESSION TAG SEQADV 4WA9 ASP A 241 UNP P00519 EXPRESSION TAG SEQADV 4WA9 ILE A 242 UNP P00519 EXPRESSION TAG SEQADV 4WA9 THR A 243 UNP P00519 EXPRESSION TAG SEQADV 4WA9 MET A 244 UNP P00519 EXPRESSION TAG SEQADV 4WA9 LYS A 245 UNP P00519 EXPRESSION TAG SEQRES 1 B 286 GLY SER SER PRO ASN TYR ASP LYS TRP GLU MET GLU ARG SEQRES 2 B 286 THR ASP ILE THR MET LYS HIS LYS LEU GLY GLY GLY GLN SEQRES 3 B 286 TYR GLY GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SER SEQRES 4 B 286 LEU THR VAL ALA VAL LYS THR LEU LYS GLU ASP THR MET SEQRES 5 B 286 GLU VAL GLU GLU PHE LEU LYS GLU ALA ALA VAL MET LYS SEQRES 6 B 286 GLU ILE LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY VAL SEQRES 7 B 286 CYS THR ARG GLU PRO PRO PHE TYR ILE ILE THR GLU PHE SEQRES 8 B 286 MET THR TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU CYS SEQRES 9 B 286 ASN ARG GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR MET SEQRES 10 B 286 ALA THR GLN ILE SER SER ALA MET GLU TYR LEU GLU LYS SEQRES 11 B 286 LYS ASN PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS SEQRES 12 B 286 LEU VAL GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP PHE SEQRES 13 B 286 GLY LEU SER ARG LEU MET THR GLY ASP THR TYR THR ALA SEQRES 14 B 286 HIS ALA GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO SEQRES 15 B 286 GLU SER LEU ALA TYR ASN LYS PHE SER ILE LYS SER ASP SEQRES 16 B 286 VAL TRP ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA THR SEQRES 17 B 286 TYR GLY MET SER PRO TYR PRO GLY ILE ASP LEU SER GLN SEQRES 18 B 286 VAL TYR GLU LEU LEU GLU LYS ASP TYR ARG MET GLU ARG SEQRES 19 B 286 PRO GLU GLY CYS PRO GLU LYS VAL TYR GLU LEU MET ARG SEQRES 20 B 286 ALA CYS TRP GLN TRP ASN PRO SER ASP ARG PRO SER PHE SEQRES 21 B 286 ALA GLU ILE HIS GLN ALA PHE GLU THR MET PHE GLN GLU SEQRES 22 B 286 SER SER ILE SER ASP GLU VAL GLU LYS GLU LEU GLY LYS SEQRES 1 A 286 GLY SER SER PRO ASN TYR ASP LYS TRP GLU MET GLU ARG SEQRES 2 A 286 THR ASP ILE THR MET LYS HIS LYS LEU GLY GLY GLY GLN SEQRES 3 A 286 TYR GLY GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SER SEQRES 4 A 286 LEU THR VAL ALA VAL LYS THR LEU LYS GLU ASP THR MET SEQRES 5 A 286 GLU VAL GLU GLU PHE LEU LYS GLU ALA ALA VAL MET LYS SEQRES 6 A 286 GLU ILE LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY VAL SEQRES 7 A 286 CYS THR ARG GLU PRO PRO PHE TYR ILE ILE THR GLU PHE SEQRES 8 A 286 MET THR TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU CYS SEQRES 9 A 286 ASN ARG GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR MET SEQRES 10 A 286 ALA THR GLN ILE SER SER ALA MET GLU TYR LEU GLU LYS SEQRES 11 A 286 LYS ASN PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS SEQRES 12 A 286 LEU VAL GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP PHE SEQRES 13 A 286 GLY LEU SER ARG LEU MET THR GLY ASP THR TYR THR ALA SEQRES 14 A 286 HIS ALA GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO SEQRES 15 A 286 GLU SER LEU ALA TYR ASN LYS PHE SER ILE LYS SER ASP SEQRES 16 A 286 VAL TRP ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA THR SEQRES 17 A 286 TYR GLY MET SER PRO TYR PRO GLY ILE ASP LEU SER GLN SEQRES 18 A 286 VAL TYR GLU LEU LEU GLU LYS ASP TYR ARG MET GLU ARG SEQRES 19 A 286 PRO GLU GLY CYS PRO GLU LYS VAL TYR GLU LEU MET ARG SEQRES 20 A 286 ALA CYS TRP GLN TRP ASN PRO SER ASP ARG PRO SER PHE SEQRES 21 A 286 ALA GLU ILE HIS GLN ALA PHE GLU THR MET PHE GLN GLU SEQRES 22 A 286 SER SER ILE SER ASP GLU VAL GLU LYS GLU LEU GLY LYS HET AXI B9000 28 HET AXI A9000 28 HETNAM AXI AXITINIB HETSYN AXI N-METHYL-2-(3-((E)-2-PYRIDIN-2-YL-VINYL)-1H-INDAZOL-6- HETSYN 2 AXI YLSULFANYL)-BENZAMIDE FORMUL 3 AXI 2(C22 H18 N4 O S) FORMUL 5 HOH *305(H2 O) HELIX 1 AA1 GLU B 238 THR B 240 5 3 HELIX 2 AA2 GLY B 249 GLN B 252 5 4 HELIX 3 AA3 LYS B 263 SER B 265 5 3 HELIX 4 AA4 GLU B 279 ILE B 293 1 15 HELIX 5 AA5 ASN B 322 CYS B 330 1 9 HELIX 6 AA6 ASN B 336 LYS B 357 1 22 HELIX 7 AA7 ALA B 365 ARG B 367 5 3 HELIX 8 AA8 GLU B 373 HIS B 375 5 3 HELIX 9 AA9 PRO B 402 THR B 406 5 5 HELIX 10 AB1 ALA B 407 ASN B 414 1 8 HELIX 11 AB2 SER B 417 THR B 434 1 18 HELIX 12 AB3 GLN B 447 LYS B 454 1 8 HELIX 13 AB4 PRO B 465 TRP B 476 1 12 HELIX 14 AB5 ASN B 479 ARG B 483 5 5 HELIX 15 AB6 SER B 485 GLU B 507 1 23 HELIX 16 AB7 GLU A 238 THR A 240 5 3 HELIX 17 AB8 LYS A 263 SER A 265 5 3 HELIX 18 AB9 LEU A 323 CYS A 330 1 8 HELIX 19 AC1 ASN A 336 LYS A 357 1 22 HELIX 20 AC2 ALA A 365 ARG A 367 5 3 HELIX 21 AC3 GLU A 373 HIS A 375 5 3 HELIX 22 AC4 PRO A 402 THR A 406 5 5 HELIX 23 AC5 ALA A 407 ASN A 414 1 8 HELIX 24 AC6 ILE A 418 THR A 434 1 17 HELIX 25 AC7 ASP A 444 SER A 446 5 3 HELIX 26 AC8 GLN A 447 LYS A 454 1 8 HELIX 27 AC9 PRO A 465 TRP A 476 1 12 HELIX 28 AD1 ASN A 479 ARG A 483 5 5 HELIX 29 AD2 SER A 485 ASP A 504 1 20 SHEET 1 AA1 5 ILE B 242 LYS B 247 0 SHEET 2 AA1 5 VAL B 256 TRP B 261 -1 O GLU B 258 N LYS B 245 SHEET 3 AA1 5 LEU B 266 LEU B 273 -1 O LEU B 266 N TRP B 261 SHEET 4 AA1 5 PHE B 311 GLU B 316 -1 O ILE B 313 N LYS B 271 SHEET 5 AA1 5 LEU B 301 CYS B 305 -1 N LEU B 302 O ILE B 314 SHEET 1 AA2 2 PHE B 359 HIS B 361 0 SHEET 2 AA2 2 LEU B 384 ARG B 386 -1 O SER B 385 N ILE B 360 SHEET 1 AA3 2 CYS B 369 VAL B 371 0 SHEET 2 AA3 2 VAL B 377 VAL B 379 -1 O LYS B 378 N LEU B 370 SHEET 1 AA4 2 TYR B 393 THR B 394 0 SHEET 2 AA4 2 LYS B 415 PHE B 416 -1 O PHE B 416 N TYR B 393 SHEET 1 AA5 5 ILE A 242 LEU A 248 0 SHEET 2 AA5 5 VAL A 256 TRP A 261 -1 O VAL A 256 N LEU A 248 SHEET 3 AA5 5 LEU A 266 VAL A 270 -1 O LEU A 266 N TRP A 261 SHEET 4 AA5 5 ILE A 314 GLU A 316 -1 O THR A 315 N ALA A 269 SHEET 5 AA5 5 LEU A 301 GLY A 303 -1 N GLY A 303 O ILE A 314 SHEET 1 AA6 3 GLY A 321 ASN A 322 0 SHEET 2 AA6 3 CYS A 369 VAL A 371 -1 O VAL A 371 N GLY A 321 SHEET 3 AA6 3 VAL A 377 VAL A 379 -1 O LYS A 378 N LEU A 370 SHEET 1 AA7 2 PHE A 359 HIS A 361 0 SHEET 2 AA7 2 LEU A 384 ARG A 386 -1 O SER A 385 N ILE A 360 SHEET 1 AA8 2 THR A 392 THR A 394 0 SHEET 2 AA8 2 LYS A 415 SER A 417 -1 O PHE A 416 N TYR A 393 SITE 1 AC1 14 TYR B 253 ALA B 269 LYS B 271 THR B 315 SITE 2 AC1 14 GLU B 316 PHE B 317 MET B 318 THR B 319 SITE 3 AC1 14 GLY B 321 ASN B 368 LEU B 370 ALA B 380 SITE 4 AC1 14 PHE B 382 HOH B9182 SITE 1 AC2 14 GLY A 249 TYR A 253 ALA A 269 LYS A 271 SITE 2 AC2 14 THR A 315 GLU A 316 PHE A 317 MET A 318 SITE 3 AC2 14 THR A 319 GLY A 321 ASN A 368 LEU A 370 SITE 4 AC2 14 PHE A 382 HOH A9157 CRYST1 56.626 111.806 128.881 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017660 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008944 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007759 0.00000 MASTER 400 0 2 29 23 0 8 6 0 0 0 44 END