HEADER TRANSFERASE 28-AUG-14 4W9W TITLE CRYSTAL STRUCTURE OF BMP-2-INDUCIBLE KINASE IN COMPLEX WITH SMALL TITLE 2 MOLECULE AZD-7762 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BMP-2-INDUCIBLE PROTEIN KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, UNP RESIDUES 39-344; COMPND 5 SYNONYM: BIKE; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: SURFACE ENTROPY MUTANT OF BMP2K KINASE DOMAIN (K320A, COMPND 10 K321A) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BMP2K, BIKE, HRIHFB2017; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-ZB KEYWDS KINASE, SMALL-MOLECULE, CATALYTIC DOMAIN, PROTEIN BINDING, INHIBITOR, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.J.SORRELL,J.M.ELKINS,T.KROJER,P.SAVITSKY,E.WILLIAMS,F.VON DELFT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 4 24-JAN-18 4W9W 1 AUTHOR REVDAT 3 09-MAR-16 4W9W 1 JRNL REVDAT 2 02-MAR-16 4W9W 1 JRNL REVDAT 1 10-SEP-14 4W9W 0 JRNL AUTH F.J.SORRELL,M.SZKLARZ,K.R.ABDUL AZEEZ,J.M.ELKINS,S.KNAPP JRNL TITL FAMILY-WIDE STRUCTURAL ANALYSIS OF HUMAN NUMB-ASSOCIATED JRNL TITL 2 PROTEIN KINASES. JRNL REF STRUCTURE V. 24 401 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 26853940 JRNL DOI 10.1016/J.STR.2015.12.015 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1682) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 41766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 39:79) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3490 -9.4120 -43.0913 REMARK 3 T TENSOR REMARK 3 T11: 0.3498 T22: 0.2220 REMARK 3 T33: 0.4862 T12: -0.0490 REMARK 3 T13: 0.0799 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 4.3053 L22: 4.4886 REMARK 3 L33: 2.3142 L12: 0.5913 REMARK 3 L13: 1.1461 L23: 0.7312 REMARK 3 S TENSOR REMARK 3 S11: 0.0815 S12: 0.2049 S13: 0.6355 REMARK 3 S21: -0.1166 S22: 0.1022 S23: -0.5715 REMARK 3 S31: -0.4979 S32: 0.3668 S33: -0.0868 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 80:148) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9488 -16.9588 -51.7401 REMARK 3 T TENSOR REMARK 3 T11: 0.4194 T22: 0.3042 REMARK 3 T33: 0.3209 T12: 0.0798 REMARK 3 T13: 0.0527 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 2.3925 L22: 3.3628 REMARK 3 L33: 1.9277 L12: -0.6612 REMARK 3 L13: 0.0062 L23: 1.2317 REMARK 3 S TENSOR REMARK 3 S11: 0.3212 S12: 0.6051 S13: 0.2783 REMARK 3 S21: -0.4133 S22: -0.2450 S23: -0.2184 REMARK 3 S31: -0.5124 S32: -0.0285 S33: -0.0120 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 149:274) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3245 -30.6753 -62.0754 REMARK 3 T TENSOR REMARK 3 T11: 0.2453 T22: 0.2734 REMARK 3 T33: 0.1838 T12: 0.0821 REMARK 3 T13: -0.0414 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 1.1597 L22: 1.5008 REMARK 3 L33: 2.8245 L12: -0.1821 REMARK 3 L13: -0.2460 L23: 0.7202 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: 0.2659 S13: 0.0931 REMARK 3 S21: -0.2126 S22: -0.0681 S23: 0.0330 REMARK 3 S31: -0.6140 S32: -0.4119 S33: 0.0191 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 275:329) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9236 -44.3943 -59.9251 REMARK 3 T TENSOR REMARK 3 T11: 0.1403 T22: 0.2274 REMARK 3 T33: 0.2217 T12: -0.0070 REMARK 3 T13: -0.0133 T23: -0.0790 REMARK 3 L TENSOR REMARK 3 L11: 2.4310 L22: 1.9152 REMARK 3 L33: 3.1389 L12: -0.3701 REMARK 3 L13: -0.0391 L23: 0.0622 REMARK 3 S TENSOR REMARK 3 S11: -0.0521 S12: 0.3439 S13: -0.3361 REMARK 3 S21: -0.0424 S22: -0.0958 S23: 0.0422 REMARK 3 S31: 0.1438 S32: -0.2622 S33: 0.0441 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 330:344) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7698 -58.8077 -64.2949 REMARK 3 T TENSOR REMARK 3 T11: 0.1873 T22: 0.3524 REMARK 3 T33: 0.4188 T12: -0.0416 REMARK 3 T13: -0.0460 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.4325 L22: 3.1106 REMARK 3 L33: 2.0179 L12: 0.2115 REMARK 3 L13: -0.4110 L23: 0.2945 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: -0.1566 S13: 0.1583 REMARK 3 S21: -0.3996 S22: -0.1954 S23: 1.0182 REMARK 3 S31: -0.0457 S32: -0.4313 S33: 0.2848 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4W9W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.6 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41784 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 33.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.87000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M SODIUM FORMATE, FRESHLY PURIFIED REMARK 280 PROTEIN, PH 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.11000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.36500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.52450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.11000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.36500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.52450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.11000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.36500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.52450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.11000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.36500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.52450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 41 CG1 CG2 REMARK 470 GLU A 55 CD OE1 OE2 REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 PHE A 62 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 75 NE CZ NH1 NH2 REMARK 470 LYS A 93 CE NZ REMARK 470 GLU A 101 CD OE1 OE2 REMARK 470 ILE A 119 CG1 CG2 CD1 REMARK 470 SER A 120 OG REMARK 470 ASP A 121 CG OD1 OD2 REMARK 470 ASN A 122 CG OD1 ND2 REMARK 470 VAL A 123 CG1 CG2 REMARK 470 ARG A 134 CD NE CZ NH1 NH2 REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 GLN A 147 CG CD OE1 NE2 REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 LYS A 211 CD CE NZ REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 LYS A 223 CE NZ REMARK 470 GLU A 303 CD OE1 OE2 REMARK 470 MET A 341 CE REMARK 470 SER A 344 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 518 O HOH A 572 1.85 REMARK 500 O HOH A 671 O HOH A 692 1.87 REMARK 500 O HOH A 626 O HOH A 693 1.89 REMARK 500 O HOH A 536 O HOH A 556 1.93 REMARK 500 O HOH A 669 O HOH A 704 1.95 REMARK 500 O HOH A 637 O HOH A 688 1.98 REMARK 500 O HOH A 520 O HOH A 539 1.99 REMARK 500 OE1 GLN A 50 O HOH A 501 2.01 REMARK 500 O HOH A 673 O HOH A 698 2.02 REMARK 500 O HOH A 671 O HOH A 714 2.04 REMARK 500 O HOH A 702 O HOH A 719 2.06 REMARK 500 O LYS A 222 O HOH A 707 2.10 REMARK 500 NH1 ARG A 69 O GLY A 73 2.12 REMARK 500 OE1 GLU A 54 O HOH A 502 2.12 REMARK 500 O SER A 103 O HOH A 577 2.14 REMARK 500 O CYS A 172 O HOH A 503 2.16 REMARK 500 O HOH A 684 O HOH A 728 2.16 REMARK 500 O ILE A 108 O HOH A 577 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 556 O HOH A 567 8544 1.49 REMARK 500 O HOH A 510 O HOH A 528 2545 2.13 REMARK 500 NH2 ARG A 69 OG SER A 326 8544 2.15 REMARK 500 O HOH A 557 O HOH A 565 1455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 179 -3.24 72.53 REMARK 500 ASP A 198 80.30 58.90 REMARK 500 THR A 244 -168.15 -123.09 REMARK 500 ASN A 330 55.22 39.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YDJ A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YDJ A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 DBREF 4W9W A 39 344 UNP Q9NSY1 BMP2K_HUMAN 39 344 SEQADV 4W9W ALA A 320 UNP Q9NSY1 LYS 320 ENGINEERED MUTATION SEQADV 4W9W ALA A 321 UNP Q9NSY1 LYS 321 ENGINEERED MUTATION SEQRES 1 A 306 VAL GLY VAL ARG VAL PHE ALA VAL GLY ARG HIS GLN VAL SEQRES 2 A 306 THR LEU GLU GLU SER LEU ALA GLU GLY GLY PHE SER THR SEQRES 3 A 306 VAL PHE LEU VAL ARG THR HIS GLY GLY ILE ARG CYS ALA SEQRES 4 A 306 LEU LYS ARG MET TYR VAL ASN ASN MET PRO ASP LEU ASN SEQRES 5 A 306 VAL CYS LYS ARG GLU ILE THR ILE MET LYS GLU LEU SER SEQRES 6 A 306 GLY HIS LYS ASN ILE VAL GLY TYR LEU ASP CYS ALA VAL SEQRES 7 A 306 ASN SER ILE SER ASP ASN VAL TRP GLU VAL LEU ILE LEU SEQRES 8 A 306 MET GLU TYR CYS ARG ALA GLY GLN VAL VAL ASN GLN MET SEQRES 9 A 306 ASN LYS LYS LEU GLN THR GLY PHE THR GLU PRO GLU VAL SEQRES 10 A 306 LEU GLN ILE PHE CYS ASP THR CYS GLU ALA VAL ALA ARG SEQRES 11 A 306 LEU HIS GLN CYS LYS THR PRO ILE ILE HIS ARG ASP LEU SEQRES 12 A 306 LYS VAL GLU ASN ILE LEU LEU ASN ASP GLY GLY ASN TYR SEQRES 13 A 306 VAL LEU CYS ASP PHE GLY SER ALA THR ASN LYS PHE LEU SEQRES 14 A 306 ASN PRO GLN LYS ASP GLY VAL ASN VAL VAL GLU GLU GLU SEQRES 15 A 306 ILE LYS LYS TYR THR THR LEU SER TYR ARG ALA PRO GLU SEQRES 16 A 306 MET ILE ASN LEU TYR GLY GLY LYS PRO ILE THR THR LYS SEQRES 17 A 306 ALA ASP ILE TRP ALA LEU GLY CYS LEU LEU TYR LYS LEU SEQRES 18 A 306 CYS PHE PHE THR LEU PRO PHE GLY GLU SER GLN VAL ALA SEQRES 19 A 306 ILE CYS ASP GLY ASN PHE THR ILE PRO ASP ASN SER ARG SEQRES 20 A 306 TYR SER ARG ASN ILE HIS CYS LEU ILE ARG PHE MET LEU SEQRES 21 A 306 GLU PRO ASP PRO GLU HIS ARG PRO ASP ILE PHE GLN VAL SEQRES 22 A 306 SER TYR PHE ALA PHE LYS PHE ALA ALA ALA ASP CYS PRO SEQRES 23 A 306 VAL SER ASN ILE ASN ASN SER SER ILE PRO SER ALA LEU SEQRES 24 A 306 PRO GLU PRO MET THR ALA SER HET YDJ A 401 25 HET YDJ A 402 25 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HETNAM YDJ 5-(3-FLUOROPHENYL)-N-[(3S)-3-PIPERIDYL]-3-UREIDO- HETNAM 2 YDJ THIOPHENE-2-CARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 YDJ 2(C17 H19 F N4 O2 S) FORMUL 4 EDO 5(C2 H6 O2) FORMUL 9 HOH *232(H2 O) HELIX 1 AA1 ASN A 85 SER A 103 1 19 HELIX 2 AA2 GLN A 137 LYS A 145 1 9 HELIX 3 AA3 THR A 151 GLN A 171 1 21 HELIX 4 AA4 LYS A 182 GLU A 184 5 3 HELIX 5 AA5 ASP A 198 ALA A 202 5 5 HELIX 6 AA6 ASN A 208 GLY A 213 1 6 HELIX 7 AA7 GLY A 213 THR A 225 1 13 HELIX 8 AA8 THR A 226 ARG A 230 5 5 HELIX 9 AA9 ALA A 231 ILE A 235 5 5 HELIX 10 AB1 THR A 244 PHE A 262 1 19 HELIX 11 AB2 SER A 269 GLY A 276 1 8 HELIX 12 AB3 SER A 287 LEU A 298 1 12 HELIX 13 AB4 ASP A 301 ARG A 305 5 5 HELIX 14 AB5 ASP A 307 ALA A 319 1 13 SHEET 1 AA1 6 VAL A 43 VAL A 46 0 SHEET 2 AA1 6 HIS A 49 GLU A 59 -1 O HIS A 49 N VAL A 46 SHEET 3 AA1 6 THR A 64 THR A 70 -1 O LEU A 67 N GLU A 55 SHEET 4 AA1 6 ARG A 75 VAL A 83 -1 O LEU A 78 N PHE A 66 SHEET 5 AA1 6 TRP A 124 GLU A 131 -1 O ILE A 128 N LYS A 79 SHEET 6 AA1 6 TYR A 111 SER A 118 -1 N ASN A 117 O GLU A 125 SHEET 1 AA2 2 ILE A 186 LEU A 188 0 SHEET 2 AA2 2 TYR A 194 LEU A 196 -1 O VAL A 195 N LEU A 187 CISPEP 1 GLY A 61 PHE A 62 0 -1.17 SITE 1 AC1 12 ALA A 77 MET A 130 GLU A 131 TYR A 132 SITE 2 AC1 12 CYS A 133 ARG A 134 GLY A 136 GLU A 184 SITE 3 AC1 12 ASN A 185 LEU A 187 HOH A 623 HOH A 704 SITE 1 AC2 8 ASN A 289 TYR A 313 LYS A 317 PHE A 318 SITE 2 AC2 8 PRO A 334 SER A 335 ALA A 336 HOH A 525 SITE 1 AC3 6 GLU A 95 MET A 130 CYS A 197 ASP A 198 SITE 2 AC3 6 PHE A 199 HOH A 669 SITE 1 AC4 5 ILE A 74 LYS A 145 GLY A 149 GLU A 154 SITE 2 AC4 5 HOH A 524 SITE 1 AC5 7 GLN A 157 CYS A 160 PHE A 316 ALA A 321 SITE 2 AC5 7 HOH A 509 HOH A 578 HOH A 670 SITE 1 AC6 3 HIS A 105 GLU A 164 ARG A 168 SITE 1 AC7 5 PHE A 278 ARG A 295 GLU A 339 PRO A 340 SITE 2 AC7 5 MET A 341 CRYST1 42.220 112.730 163.049 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023685 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006133 0.00000 MASTER 410 0 7 14 8 0 14 6 0 0 0 24 END