HEADER OXIDOREDUCTASE 22-AUG-14 4W7I TITLE CRYSTAL STRUCTURE OF DEH REDUCTASE A1-R' MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-DEOXY-L-ERYTHRO-5-HEXOSEULOSE URONATE REDUCTASE A1-R'; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS SP. A1; SOURCE 3 ORGANISM_TAXID: 90322; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ALPHA/BETA/ALPHA, ROSSMANN-FOLD, ALGINATE METABOLISM, SHORT-CHAIN KEYWDS 2 DEHYDROGENASE/REDUCTASE, OXIDOREDUCTASE, LOOP-EXCHANGE EXPDTA X-RAY DIFFRACTION AUTHOR R.TAKASE,B.MIKAMI,S.KAWAI,K.MURATA,W.HASHIMOTO REVDAT 3 29-JAN-20 4W7I 1 SOURCE JRNL REMARK REVDAT 2 10-DEC-14 4W7I 1 JRNL REVDAT 1 24-SEP-14 4W7I 0 JRNL AUTH R.TAKASE,B.MIKAMI,S.KAWAI,K.MURATA,W.HASHIMOTO JRNL TITL STRUCTURE-BASED CONVERSION OF THE COENZYME REQUIREMENT OF A JRNL TITL 2 SHORT-CHAIN DEHYDROGENASE/REDUCTASE INVOLVED IN BACTERIAL JRNL TITL 3 ALGINATE METABOLISM. JRNL REF J.BIOL.CHEM. V. 289 33198 2014 JRNL REFN ESSN 1083-351X JRNL PMID 25288804 JRNL DOI 10.1074/JBC.M114.585661 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 73314 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3882 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5326 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE SET COUNT : 279 REMARK 3 BIN FREE R VALUE : 0.4310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7320 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.47000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : 0.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.199 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.242 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7444 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7253 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10042 ; 1.454 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16577 ; 0.825 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 977 ; 6.383 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 304 ;40.859 ;22.632 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1211 ;15.235 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;16.565 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1129 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8571 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1765 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3932 ; 2.767 ; 3.902 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3931 ; 2.765 ; 3.902 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4901 ; 4.014 ; 5.843 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4902 ; 4.013 ; 5.843 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3512 ; 2.841 ; 4.287 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3513 ; 2.841 ; 4.287 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5142 ; 4.263 ; 6.279 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8790 ; 6.325 ;32.108 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8751 ; 6.315 ;32.084 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4W7I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203289. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77352 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4TKL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 300, CACODYLATE, CALCIUM ACETATE, REMARK 280 PH 6.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.60750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 89.07600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.60750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 89.07600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -35.62110 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -89.17158 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 311 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 317 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 199 REMARK 465 ALA A 200 REMARK 465 PHE A 201 REMARK 465 HIS A 202 REMARK 465 ALA A 203 REMARK 465 ASP A 204 REMARK 465 LYS A 205 REMARK 465 SER A 206 REMARK 465 ASP A 207 REMARK 465 GLU A 208 REMARK 465 LEU A 209 REMARK 465 MET B 1 REMARK 465 THR B 199 REMARK 465 ALA B 200 REMARK 465 PHE B 201 REMARK 465 HIS B 202 REMARK 465 ALA B 203 REMARK 465 ASP B 204 REMARK 465 LYS B 205 REMARK 465 SER B 206 REMARK 465 ASP B 207 REMARK 465 GLU B 208 REMARK 465 LEU B 209 REMARK 465 MET C 1 REMARK 465 THR C 199 REMARK 465 ALA C 200 REMARK 465 PHE C 201 REMARK 465 HIS C 202 REMARK 465 ALA C 203 REMARK 465 ASP C 204 REMARK 465 LYS C 205 REMARK 465 SER C 206 REMARK 465 ASP C 207 REMARK 465 GLU C 208 REMARK 465 LEU C 209 REMARK 465 THR D 199 REMARK 465 ALA D 200 REMARK 465 PHE D 201 REMARK 465 HIS D 202 REMARK 465 ALA D 203 REMARK 465 ASP D 204 REMARK 465 LYS D 205 REMARK 465 SER D 206 REMARK 465 ASP D 207 REMARK 465 GLU D 208 REMARK 465 LEU D 209 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN D 73 OG SER D 77 1.97 REMARK 500 O GLN C 73 OG SER C 77 1.98 REMARK 500 O ASP D 111 OD2 ASP D 115 2.01 REMARK 500 O ASP B 111 OD2 ASP B 115 2.02 REMARK 500 O GLN B 73 OG SER B 77 2.14 REMARK 500 NH1 ARG C 39 OD1 ASP C 65 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 84 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 39 -61.65 -92.80 REMARK 500 LYS A 40 -27.87 -155.54 REMARK 500 ILE A 66 5.93 -57.84 REMARK 500 THR A 141 -125.75 -129.24 REMARK 500 ASN A 252 11.77 -149.88 REMARK 500 CYS A 257 76.47 -118.62 REMARK 500 ARG B 39 -80.01 -107.32 REMARK 500 ILE B 66 7.18 -59.23 REMARK 500 ASN B 101 152.25 -49.19 REMARK 500 THR B 141 -124.51 -124.64 REMARK 500 ASN B 252 11.36 -150.12 REMARK 500 ARG C 39 -80.40 -99.15 REMARK 500 ASP C 65 58.24 -99.36 REMARK 500 ILE C 66 -0.90 -56.64 REMARK 500 THR C 141 -125.76 -127.22 REMARK 500 ASN C 252 14.66 -152.49 REMARK 500 ARG D 39 -89.42 -103.57 REMARK 500 ASP D 65 59.70 -98.69 REMARK 500 ILE D 66 1.04 -51.34 REMARK 500 ALA D 108 -57.58 -23.58 REMARK 500 THR D 141 -121.90 -114.96 REMARK 500 ASN D 252 13.43 -147.73 REMARK 500 CYS D 257 77.85 -118.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TKL RELATED DB: PDB REMARK 900 RELATED ID: 4W7H RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS PROTEIN IS MUTANT FORM WITH MUTATION SITES T16S, E17Q, N37H, REMARK 999 S38G, H39R, V40K, AND D41A. SEQUENCE OF THE WILD TYPE HAS BEEN REMARK 999 DEPOSITED TO GENBANK WITH ACCESSION ID AB970509. DBREF 4W7I A 1 258 PDB 4W7I 4W7I 1 258 DBREF 4W7I B 1 258 PDB 4W7I 4W7I 1 258 DBREF 4W7I C 1 258 PDB 4W7I 4W7I 1 258 DBREF 4W7I D 1 258 PDB 4W7I 4W7I 1 258 SEQRES 1 A 258 MET PHE SER ASP LEU LYS GLY LYS ARG ILE LEU ILE THR SEQRES 2 A 258 GLY SER SER GLN GLY ILE GLY MET ALA THR ALA ILE GLU SEQRES 3 A 258 LEU ALA ARG TYR GLY ALA VAL VAL GLY LEU HIS GLY ARG SEQRES 4 A 258 LYS ALA PRO ALA ASP PRO ALA LEU LEU LEU GLY LYS LEU SEQRES 5 A 258 ARG GLU ALA GLY GLY ASP GLY ALA PHE PHE ARG ALA ASP SEQRES 6 A 258 ILE THR LYS THR ALA GLU CYS GLN ARG LEU VAL SER ALA SEQRES 7 A 258 PHE VAL GLU ARG PHE ASP GLY ILE ASP VAL LEU ILE ASN SEQRES 8 A 258 ASN ALA GLY GLY LEU ALA GLY ARG SER ASN LEU GLU ASN SEQRES 9 A 258 ILE ASP ASP ALA PHE TYR ASP ARG VAL MET ASP LEU ASN SEQRES 10 A 258 GLY ARG SER VAL LEU MET MET THR LYS PHE ALA ILE PRO SEQRES 11 A 258 HIS LEU ARG ALA SER ALA LYS ALA SER GLY THR THR SER SEQRES 12 A 258 ALA VAL ILE SER THR GLY SER ILE ALA ALA ARG GLU GLY SEQRES 13 A 258 GLY GLY ILE GLY ALA GLY VAL TYR ALA ALA SER LYS ALA SEQRES 14 A 258 TRP LEU HIS ASP ILE HIS ARG ASN TRP VAL LYS GLU PHE SEQRES 15 A 258 THR LYS ASP SER ILE ARG PHE ASN ILE VAL ALA PRO GLY SEQRES 16 A 258 THR VAL ASP THR ALA PHE HIS ALA ASP LYS SER ASP GLU SEQRES 17 A 258 LEU LYS THR ARG ILE ALA ASN SER ILE PRO MET GLY ARG SEQRES 18 A 258 PHE GLY THR VAL GLN GLU LEU ALA PRO ALA TYR VAL PHE SEQRES 19 A 258 PHE ALA SER HIS ALA ALA SER GLY TYR ILE THR GLY GLN SEQRES 20 A 258 ILE LEU ASP VAL ASN GLY GLY GLN ILE CYS PRO SEQRES 1 B 258 MET PHE SER ASP LEU LYS GLY LYS ARG ILE LEU ILE THR SEQRES 2 B 258 GLY SER SER GLN GLY ILE GLY MET ALA THR ALA ILE GLU SEQRES 3 B 258 LEU ALA ARG TYR GLY ALA VAL VAL GLY LEU HIS GLY ARG SEQRES 4 B 258 LYS ALA PRO ALA ASP PRO ALA LEU LEU LEU GLY LYS LEU SEQRES 5 B 258 ARG GLU ALA GLY GLY ASP GLY ALA PHE PHE ARG ALA ASP SEQRES 6 B 258 ILE THR LYS THR ALA GLU CYS GLN ARG LEU VAL SER ALA SEQRES 7 B 258 PHE VAL GLU ARG PHE ASP GLY ILE ASP VAL LEU ILE ASN SEQRES 8 B 258 ASN ALA GLY GLY LEU ALA GLY ARG SER ASN LEU GLU ASN SEQRES 9 B 258 ILE ASP ASP ALA PHE TYR ASP ARG VAL MET ASP LEU ASN SEQRES 10 B 258 GLY ARG SER VAL LEU MET MET THR LYS PHE ALA ILE PRO SEQRES 11 B 258 HIS LEU ARG ALA SER ALA LYS ALA SER GLY THR THR SER SEQRES 12 B 258 ALA VAL ILE SER THR GLY SER ILE ALA ALA ARG GLU GLY SEQRES 13 B 258 GLY GLY ILE GLY ALA GLY VAL TYR ALA ALA SER LYS ALA SEQRES 14 B 258 TRP LEU HIS ASP ILE HIS ARG ASN TRP VAL LYS GLU PHE SEQRES 15 B 258 THR LYS ASP SER ILE ARG PHE ASN ILE VAL ALA PRO GLY SEQRES 16 B 258 THR VAL ASP THR ALA PHE HIS ALA ASP LYS SER ASP GLU SEQRES 17 B 258 LEU LYS THR ARG ILE ALA ASN SER ILE PRO MET GLY ARG SEQRES 18 B 258 PHE GLY THR VAL GLN GLU LEU ALA PRO ALA TYR VAL PHE SEQRES 19 B 258 PHE ALA SER HIS ALA ALA SER GLY TYR ILE THR GLY GLN SEQRES 20 B 258 ILE LEU ASP VAL ASN GLY GLY GLN ILE CYS PRO SEQRES 1 C 258 MET PHE SER ASP LEU LYS GLY LYS ARG ILE LEU ILE THR SEQRES 2 C 258 GLY SER SER GLN GLY ILE GLY MET ALA THR ALA ILE GLU SEQRES 3 C 258 LEU ALA ARG TYR GLY ALA VAL VAL GLY LEU HIS GLY ARG SEQRES 4 C 258 LYS ALA PRO ALA ASP PRO ALA LEU LEU LEU GLY LYS LEU SEQRES 5 C 258 ARG GLU ALA GLY GLY ASP GLY ALA PHE PHE ARG ALA ASP SEQRES 6 C 258 ILE THR LYS THR ALA GLU CYS GLN ARG LEU VAL SER ALA SEQRES 7 C 258 PHE VAL GLU ARG PHE ASP GLY ILE ASP VAL LEU ILE ASN SEQRES 8 C 258 ASN ALA GLY GLY LEU ALA GLY ARG SER ASN LEU GLU ASN SEQRES 9 C 258 ILE ASP ASP ALA PHE TYR ASP ARG VAL MET ASP LEU ASN SEQRES 10 C 258 GLY ARG SER VAL LEU MET MET THR LYS PHE ALA ILE PRO SEQRES 11 C 258 HIS LEU ARG ALA SER ALA LYS ALA SER GLY THR THR SER SEQRES 12 C 258 ALA VAL ILE SER THR GLY SER ILE ALA ALA ARG GLU GLY SEQRES 13 C 258 GLY GLY ILE GLY ALA GLY VAL TYR ALA ALA SER LYS ALA SEQRES 14 C 258 TRP LEU HIS ASP ILE HIS ARG ASN TRP VAL LYS GLU PHE SEQRES 15 C 258 THR LYS ASP SER ILE ARG PHE ASN ILE VAL ALA PRO GLY SEQRES 16 C 258 THR VAL ASP THR ALA PHE HIS ALA ASP LYS SER ASP GLU SEQRES 17 C 258 LEU LYS THR ARG ILE ALA ASN SER ILE PRO MET GLY ARG SEQRES 18 C 258 PHE GLY THR VAL GLN GLU LEU ALA PRO ALA TYR VAL PHE SEQRES 19 C 258 PHE ALA SER HIS ALA ALA SER GLY TYR ILE THR GLY GLN SEQRES 20 C 258 ILE LEU ASP VAL ASN GLY GLY GLN ILE CYS PRO SEQRES 1 D 258 MET PHE SER ASP LEU LYS GLY LYS ARG ILE LEU ILE THR SEQRES 2 D 258 GLY SER SER GLN GLY ILE GLY MET ALA THR ALA ILE GLU SEQRES 3 D 258 LEU ALA ARG TYR GLY ALA VAL VAL GLY LEU HIS GLY ARG SEQRES 4 D 258 LYS ALA PRO ALA ASP PRO ALA LEU LEU LEU GLY LYS LEU SEQRES 5 D 258 ARG GLU ALA GLY GLY ASP GLY ALA PHE PHE ARG ALA ASP SEQRES 6 D 258 ILE THR LYS THR ALA GLU CYS GLN ARG LEU VAL SER ALA SEQRES 7 D 258 PHE VAL GLU ARG PHE ASP GLY ILE ASP VAL LEU ILE ASN SEQRES 8 D 258 ASN ALA GLY GLY LEU ALA GLY ARG SER ASN LEU GLU ASN SEQRES 9 D 258 ILE ASP ASP ALA PHE TYR ASP ARG VAL MET ASP LEU ASN SEQRES 10 D 258 GLY ARG SER VAL LEU MET MET THR LYS PHE ALA ILE PRO SEQRES 11 D 258 HIS LEU ARG ALA SER ALA LYS ALA SER GLY THR THR SER SEQRES 12 D 258 ALA VAL ILE SER THR GLY SER ILE ALA ALA ARG GLU GLY SEQRES 13 D 258 GLY GLY ILE GLY ALA GLY VAL TYR ALA ALA SER LYS ALA SEQRES 14 D 258 TRP LEU HIS ASP ILE HIS ARG ASN TRP VAL LYS GLU PHE SEQRES 15 D 258 THR LYS ASP SER ILE ARG PHE ASN ILE VAL ALA PRO GLY SEQRES 16 D 258 THR VAL ASP THR ALA PHE HIS ALA ASP LYS SER ASP GLU SEQRES 17 D 258 LEU LYS THR ARG ILE ALA ASN SER ILE PRO MET GLY ARG SEQRES 18 D 258 PHE GLY THR VAL GLN GLU LEU ALA PRO ALA TYR VAL PHE SEQRES 19 D 258 PHE ALA SER HIS ALA ALA SER GLY TYR ILE THR GLY GLN SEQRES 20 D 258 ILE LEU ASP VAL ASN GLY GLY GLN ILE CYS PRO FORMUL 5 HOH *224(H2 O) HELIX 1 AA1 PHE A 2 LYS A 6 5 5 HELIX 2 AA2 GLN A 17 ARG A 29 1 13 HELIX 3 AA3 ASP A 44 GLY A 56 1 13 HELIX 4 AA4 LYS A 68 ASP A 84 1 17 HELIX 5 AA5 ASN A 101 ILE A 105 5 5 HELIX 6 AA6 ASP A 106 GLY A 118 1 13 HELIX 7 AA7 GLY A 118 GLY A 140 1 23 HELIX 8 AA8 ILE A 151 GLY A 156 1 6 HELIX 9 AA9 ALA A 161 THR A 183 1 23 HELIX 10 AB1 THR A 211 SER A 216 1 6 HELIX 11 AB2 THR A 224 SER A 237 1 14 HELIX 12 AB3 SER A 237 GLY A 242 1 6 HELIX 13 AB4 PHE B 2 LYS B 6 5 5 HELIX 14 AB5 GLN B 17 TYR B 30 1 14 HELIX 15 AB6 ASP B 44 GLY B 56 1 13 HELIX 16 AB7 LYS B 68 ASP B 84 1 17 HELIX 17 AB8 ASN B 101 ILE B 105 5 5 HELIX 18 AB9 ASP B 106 GLY B 118 1 13 HELIX 19 AC1 GLY B 118 GLY B 140 1 23 HELIX 20 AC2 ILE B 151 GLY B 156 1 6 HELIX 21 AC3 ALA B 161 THR B 183 1 23 HELIX 22 AC4 ILE B 213 ILE B 217 5 5 HELIX 23 AC5 THR B 224 SER B 237 1 14 HELIX 24 AC6 SER B 237 GLY B 242 1 6 HELIX 25 AC7 PHE C 2 LYS C 6 5 5 HELIX 26 AC8 GLN C 17 ARG C 29 1 13 HELIX 27 AC9 ASP C 44 GLY C 56 1 13 HELIX 28 AD1 LYS C 68 ASP C 84 1 17 HELIX 29 AD2 ASN C 101 ILE C 105 5 5 HELIX 30 AD3 ASP C 106 GLY C 118 1 13 HELIX 31 AD4 GLY C 118 GLY C 140 1 23 HELIX 32 AD5 ILE C 151 GLY C 156 1 6 HELIX 33 AD6 ALA C 161 THR C 183 1 23 HELIX 34 AD7 THR C 211 SER C 216 1 6 HELIX 35 AD8 THR C 224 SER C 237 1 14 HELIX 36 AD9 SER C 237 GLY C 242 1 6 HELIX 37 AE1 PHE D 2 LYS D 6 5 5 HELIX 38 AE2 GLN D 17 ARG D 29 1 13 HELIX 39 AE3 ASP D 44 GLY D 56 1 13 HELIX 40 AE4 LYS D 68 ASP D 84 1 17 HELIX 41 AE5 ASN D 101 ILE D 105 5 5 HELIX 42 AE6 ASP D 106 GLY D 118 1 13 HELIX 43 AE7 GLY D 118 GLY D 140 1 23 HELIX 44 AE8 ILE D 151 GLY D 156 1 6 HELIX 45 AE9 ALA D 161 THR D 183 1 23 HELIX 46 AF1 ILE D 213 ILE D 217 5 5 HELIX 47 AF2 THR D 224 SER D 237 1 14 HELIX 48 AF3 SER D 237 GLY D 242 1 6 SHEET 1 AA1 7 ASP A 58 ARG A 63 0 SHEET 2 AA1 7 VAL A 33 GLY A 38 1 N LEU A 36 O ALA A 60 SHEET 3 AA1 7 ARG A 9 ILE A 12 1 N ILE A 12 O GLY A 35 SHEET 4 AA1 7 VAL A 88 ASN A 91 1 O ILE A 90 N LEU A 11 SHEET 5 AA1 7 SER A 143 THR A 148 1 O ILE A 146 N LEU A 89 SHEET 6 AA1 7 ILE A 187 PRO A 194 1 O ARG A 188 N SER A 143 SHEET 7 AA1 7 GLN A 247 VAL A 251 1 O GLN A 247 N ILE A 191 SHEET 1 AA2 7 ASP B 58 ARG B 63 0 SHEET 2 AA2 7 VAL B 33 GLY B 38 1 N LEU B 36 O ALA B 60 SHEET 3 AA2 7 ARG B 9 ILE B 12 1 N ILE B 10 O VAL B 33 SHEET 4 AA2 7 VAL B 88 ASN B 91 1 O ILE B 90 N LEU B 11 SHEET 5 AA2 7 SER B 143 THR B 148 1 O ALA B 144 N LEU B 89 SHEET 6 AA2 7 ILE B 187 PRO B 194 1 O ARG B 188 N SER B 143 SHEET 7 AA2 7 GLN B 247 VAL B 251 1 O GLN B 247 N ILE B 191 SHEET 1 AA3 7 ASP C 58 ARG C 63 0 SHEET 2 AA3 7 VAL C 33 GLY C 38 1 N LEU C 36 O ALA C 60 SHEET 3 AA3 7 ARG C 9 ILE C 12 1 N ILE C 10 O VAL C 33 SHEET 4 AA3 7 VAL C 88 ASN C 91 1 O ILE C 90 N LEU C 11 SHEET 5 AA3 7 SER C 143 THR C 148 1 O ILE C 146 N LEU C 89 SHEET 6 AA3 7 ILE C 187 PRO C 194 1 O ARG C 188 N SER C 143 SHEET 7 AA3 7 GLN C 247 VAL C 251 1 O GLN C 247 N ILE C 191 SHEET 1 AA4 7 ASP D 58 ARG D 63 0 SHEET 2 AA4 7 VAL D 33 GLY D 38 1 N LEU D 36 O ALA D 60 SHEET 3 AA4 7 ARG D 9 ILE D 12 1 N ILE D 10 O VAL D 33 SHEET 4 AA4 7 VAL D 88 ASN D 91 1 O ILE D 90 N LEU D 11 SHEET 5 AA4 7 SER D 143 THR D 148 1 O ILE D 146 N ASN D 91 SHEET 6 AA4 7 ILE D 187 PRO D 194 1 O ARG D 188 N SER D 143 SHEET 7 AA4 7 GLN D 247 VAL D 251 1 O GLN D 247 N ILE D 191 CRYST1 71.215 178.152 96.013 90.00 111.76 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014042 0.000000 0.005606 0.00000 SCALE2 0.000000 0.005613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011214 0.00000 MASTER 404 0 0 48 28 0 0 6 0 0 0 80 END