HEADER TRANSFERASE 07-DEC-14 4UD4 TITLE STRUCTURAL PLASTICITY OF CID1 PROVIDES A BASIS FOR ITS RNA TERMINAL TITLE 2 URIDYLYL TRANSFERASE ACTIVITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(A) RNA POLYMERASE PROTEIN CID1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CAFFEINE-INDUCED DEATH PROTEIN 1, CAFFEINE-INDUCED DEATH COMPND 5 SUPPRESSOR 1 URIDYLYLTRANSFERASE; COMPND 6 EC: 2.7.7.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-TCID1 KEYWDS TRANSFERASE, URIDYLYLTRANSFERASE ENZYME EXPDTA X-RAY DIFFRACTION AUTHOR L.A.YATES,B.P.DURRANT,S.FLEURDEPINE,K.HARLOS,C.J.NORBURY, AUTHOR 2 R.J.C.GILBERT REVDAT 3 28-MAR-18 4UD4 1 SOURCE JRNL REVDAT 2 01-APR-15 4UD4 1 JRNL REVDAT 1 18-MAR-15 4UD4 0 JRNL AUTH L.A.YATES,B.P.DURRANT,S.FLEURDEPINE,K.HARLOS,C.J.NORBURY, JRNL AUTH 2 R.J.GILBERT JRNL TITL STRUCTURAL PLASTICITY OF CID1 PROVIDES A BASIS FOR ITS JRNL TITL 2 DISTRIBUTIVE RNA TERMINAL URIDYLYL TRANSFERASE ACTIVITY. JRNL REF NUCLEIC ACIDS RES. V. 43 2968 2015 JRNL REFN ESSN 1362-4962 JRNL PMID 25712096 JRNL DOI 10.1093/NAR/GKV122 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 79738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9190 - 5.3432 0.92 2489 138 0.1542 0.1935 REMARK 3 2 5.3432 - 4.2420 0.94 2552 147 0.1444 0.1647 REMARK 3 3 4.2420 - 3.7061 0.95 2570 151 0.1423 0.1550 REMARK 3 4 3.7061 - 3.3673 0.95 2589 128 0.1624 0.1838 REMARK 3 5 3.3673 - 3.1260 0.95 2568 130 0.1822 0.2092 REMARK 3 6 3.1260 - 2.9418 0.97 2613 154 0.1842 0.2245 REMARK 3 7 2.9418 - 2.7944 0.97 2625 135 0.1791 0.2178 REMARK 3 8 2.7944 - 2.6728 0.98 2685 147 0.1793 0.2132 REMARK 3 9 2.6728 - 2.5699 0.97 2614 127 0.1824 0.2084 REMARK 3 10 2.5699 - 2.4813 0.97 2682 130 0.1806 0.2237 REMARK 3 11 2.4813 - 2.4037 0.97 2629 146 0.1885 0.2278 REMARK 3 12 2.4037 - 2.3350 0.97 2630 139 0.1784 0.2134 REMARK 3 13 2.3350 - 2.2735 0.97 2653 132 0.1732 0.2188 REMARK 3 14 2.2735 - 2.2180 0.97 2651 137 0.1726 0.2251 REMARK 3 15 2.2180 - 2.1676 0.97 2646 144 0.1808 0.2214 REMARK 3 16 2.1676 - 2.1215 0.97 2638 126 0.1805 0.2096 REMARK 3 17 2.1215 - 2.0790 0.97 2591 142 0.1805 0.2261 REMARK 3 18 2.0790 - 2.0398 0.96 2609 143 0.1885 0.2282 REMARK 3 19 2.0398 - 2.0034 0.97 2648 141 0.1939 0.2449 REMARK 3 20 2.0034 - 1.9694 0.97 2608 124 0.2001 0.2238 REMARK 3 21 1.9694 - 1.9377 0.97 2635 133 0.2015 0.2389 REMARK 3 22 1.9377 - 1.9078 0.96 2626 137 0.2224 0.2783 REMARK 3 23 1.9078 - 1.8798 0.96 2555 142 0.2289 0.2619 REMARK 3 24 1.8798 - 1.8533 0.97 2625 143 0.2278 0.2732 REMARK 3 25 1.8533 - 1.8283 0.96 2586 150 0.2383 0.2554 REMARK 3 26 1.8283 - 1.8045 0.96 2642 140 0.2460 0.2752 REMARK 3 27 1.8045 - 1.7820 0.96 2553 118 0.2525 0.2903 REMARK 3 28 1.7820 - 1.7605 0.96 2616 141 0.2697 0.3730 REMARK 3 29 1.7605 - 1.7400 0.95 2611 134 0.2803 0.3394 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5320 REMARK 3 ANGLE : 1.065 7187 REMARK 3 CHIRALITY : 0.051 785 REMARK 3 PLANARITY : 0.006 913 REMARK 3 DIHEDRAL : 13.708 1984 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1528 -13.9299 -28.0141 REMARK 3 T TENSOR REMARK 3 T11: 0.3701 T22: 0.3315 REMARK 3 T33: 0.3452 T12: 0.0926 REMARK 3 T13: 0.0865 T23: 0.0967 REMARK 3 L TENSOR REMARK 3 L11: 8.8581 L22: 3.3181 REMARK 3 L33: 2.4247 L12: 3.0140 REMARK 3 L13: 0.4894 L23: -0.3940 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: 0.0246 S13: -0.6924 REMARK 3 S21: -0.3643 S22: -0.2982 S23: -0.6720 REMARK 3 S31: 0.1884 S32: 0.5617 S33: 0.2699 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6290 2.3885 -32.0445 REMARK 3 T TENSOR REMARK 3 T11: 0.4158 T22: 0.6220 REMARK 3 T33: 0.4178 T12: -0.0857 REMARK 3 T13: -0.0156 T23: 0.1577 REMARK 3 L TENSOR REMARK 3 L11: 4.9525 L22: 1.6778 REMARK 3 L33: 7.8878 L12: -1.1520 REMARK 3 L13: -1.9957 L23: 0.5326 REMARK 3 S TENSOR REMARK 3 S11: 0.2264 S12: -0.4918 S13: 0.0297 REMARK 3 S21: 0.2340 S22: 0.1189 S23: -0.1216 REMARK 3 S31: -0.6138 S32: 0.4777 S33: -0.2115 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6590 -5.1089 -27.6321 REMARK 3 T TENSOR REMARK 3 T11: 0.3759 T22: 0.2758 REMARK 3 T33: 0.2714 T12: 0.0292 REMARK 3 T13: 0.0426 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 2.7877 L22: 0.8918 REMARK 3 L33: 1.7635 L12: 0.2274 REMARK 3 L13: -0.3111 L23: -0.1665 REMARK 3 S TENSOR REMARK 3 S11: 0.0787 S12: 0.2119 S13: -0.0036 REMARK 3 S21: -0.2963 S22: -0.1237 S23: -0.2044 REMARK 3 S31: -0.1116 S32: 0.2131 S33: 0.1084 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5949 -0.3943 -15.9239 REMARK 3 T TENSOR REMARK 3 T11: 0.2715 T22: 0.2806 REMARK 3 T33: 0.1955 T12: 0.0133 REMARK 3 T13: 0.0486 T23: -0.0528 REMARK 3 L TENSOR REMARK 3 L11: 3.1581 L22: 3.3772 REMARK 3 L33: 2.8427 L12: 0.7134 REMARK 3 L13: -0.3108 L23: 0.0170 REMARK 3 S TENSOR REMARK 3 S11: 0.1762 S12: -0.3833 S13: 0.1698 REMARK 3 S21: 0.1570 S22: -0.0965 S23: -0.0339 REMARK 3 S31: -0.3323 S32: 0.0339 S33: -0.0600 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 361 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1481 5.2033 -30.7536 REMARK 3 T TENSOR REMARK 3 T11: 0.4891 T22: 0.3326 REMARK 3 T33: 0.3287 T12: 0.1041 REMARK 3 T13: 0.0676 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 1.7445 L22: 2.3148 REMARK 3 L33: 1.7351 L12: -0.3210 REMARK 3 L13: -0.8641 L23: -1.1298 REMARK 3 S TENSOR REMARK 3 S11: 0.0803 S12: 0.5627 S13: 0.4664 REMARK 3 S21: -0.6689 S22: -0.0041 S23: 0.0068 REMARK 3 S31: -0.5733 S32: -0.0414 S33: -0.0384 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 362 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1265 -15.6986 -38.4075 REMARK 3 T TENSOR REMARK 3 T11: 0.6139 T22: 0.5687 REMARK 3 T33: 0.4855 T12: 0.0028 REMARK 3 T13: -0.1309 T23: -0.1075 REMARK 3 L TENSOR REMARK 3 L11: 0.7788 L22: 5.8336 REMARK 3 L33: 1.9556 L12: -1.5932 REMARK 3 L13: 1.1238 L23: -1.4074 REMARK 3 S TENSOR REMARK 3 S11: -0.1862 S12: 0.9329 S13: -0.3465 REMARK 3 S21: -0.9948 S22: -0.0191 S23: 0.5784 REMARK 3 S31: 0.2880 S32: -0.4556 S33: 0.2087 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.7685 33.6315 6.8732 REMARK 3 T TENSOR REMARK 3 T11: 0.3568 T22: 0.3018 REMARK 3 T33: 0.2588 T12: -0.0774 REMARK 3 T13: 0.0132 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 6.2157 L22: 2.5187 REMARK 3 L33: 5.7920 L12: -0.9070 REMARK 3 L13: 3.5895 L23: -1.4553 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: -0.3502 S13: 0.4020 REMARK 3 S21: 0.3966 S22: -0.2207 S23: -0.2439 REMARK 3 S31: -0.5992 S32: 0.2744 S33: 0.2794 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.8440 21.8644 17.5469 REMARK 3 T TENSOR REMARK 3 T11: 0.3356 T22: 0.5413 REMARK 3 T33: 0.3902 T12: -0.0953 REMARK 3 T13: -0.0781 T23: 0.1446 REMARK 3 L TENSOR REMARK 3 L11: 4.9594 L22: 3.9890 REMARK 3 L33: 6.4703 L12: -1.0647 REMARK 3 L13: -1.0405 L23: -1.1400 REMARK 3 S TENSOR REMARK 3 S11: 0.0570 S12: -0.5155 S13: -0.2299 REMARK 3 S21: 0.3490 S22: -0.3239 S23: -0.4139 REMARK 3 S31: -0.2844 S32: 0.7718 S33: 0.1903 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 159 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6858 21.3552 -6.5043 REMARK 3 T TENSOR REMARK 3 T11: 0.1765 T22: 0.1973 REMARK 3 T33: 0.2568 T12: 0.0046 REMARK 3 T13: 0.0059 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 2.2634 L22: 1.4606 REMARK 3 L33: 2.5084 L12: 0.1935 REMARK 3 L13: -0.9936 L23: -0.3869 REMARK 3 S TENSOR REMARK 3 S11: -0.0443 S12: -0.0178 S13: -0.2085 REMARK 3 S21: -0.0853 S22: -0.0891 S23: -0.1951 REMARK 3 S31: 0.0693 S32: 0.1396 S33: 0.1204 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 305 THROUGH 380 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0580 15.3020 0.4380 REMARK 3 T TENSOR REMARK 3 T11: 0.3016 T22: 0.2980 REMARK 3 T33: 0.3232 T12: -0.0386 REMARK 3 T13: 0.0331 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 3.3052 L22: 3.5898 REMARK 3 L33: 2.5572 L12: -0.5236 REMARK 3 L13: -0.6513 L23: -0.9569 REMARK 3 S TENSOR REMARK 3 S11: -0.1151 S12: -0.2137 S13: -0.5356 REMARK 3 S21: 0.1279 S22: 0.0277 S23: 0.2681 REMARK 3 S31: 0.2517 S32: -0.1731 S33: 0.0704 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1290062472. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79749 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 45.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4E7X REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM HEPES, 200MM NACL, 0.5MM TCEP, PH REMARK 280 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 149 REMARK 465 LYS A 150 REMARK 465 ASN A 151 REMARK 465 SER A 308 REMARK 465 ALA A 309 REMARK 465 THR A 310 REMARK 465 GLU A 311 REMARK 465 HIS A 312 REMARK 465 THR A 313 REMARK 465 GLY A 314 REMARK 465 SER A 315 REMARK 465 ALA A 316 REMARK 465 ASP A 317 REMARK 465 GLN A 318 REMARK 465 ILE A 319 REMARK 465 ILE A 320 REMARK 465 PRO A 380 REMARK 465 PRO A 381 REMARK 465 ARG A 382 REMARK 465 ARG A 383 REMARK 465 GLN A 384 REMARK 465 LYS A 385 REMARK 465 LYS A 386 REMARK 465 THR A 387 REMARK 465 ASP A 388 REMARK 465 GLU A 389 REMARK 465 GLN A 390 REMARK 465 SER A 391 REMARK 465 ASN A 392 REMARK 465 LYS A 393 REMARK 465 LYS A 394 REMARK 465 LEU A 395 REMARK 465 LEU A 396 REMARK 465 ASN A 397 REMARK 465 GLU A 398 REMARK 465 THR A 399 REMARK 465 ASP A 400 REMARK 465 GLY A 401 REMARK 465 ASP A 402 REMARK 465 ASN A 403 REMARK 465 SER A 404 REMARK 465 GLU A 405 REMARK 465 SER B 40 REMARK 465 SER B 147 REMARK 465 ASP B 148 REMARK 465 THR B 149 REMARK 465 LYS B 150 REMARK 465 ASN B 151 REMARK 465 GLY B 152 REMARK 465 PHE B 153 REMARK 465 GLY B 154 REMARK 465 SER B 308 REMARK 465 ALA B 309 REMARK 465 THR B 310 REMARK 465 GLU B 311 REMARK 465 HIS B 312 REMARK 465 THR B 313 REMARK 465 GLY B 314 REMARK 465 SER B 315 REMARK 465 ALA B 316 REMARK 465 ASP B 317 REMARK 465 GLN B 318 REMARK 465 ILE B 319 REMARK 465 ILE B 320 REMARK 465 LYS B 321 REMARK 465 ASP B 322 REMARK 465 PRO B 381 REMARK 465 ARG B 382 REMARK 465 ARG B 383 REMARK 465 GLN B 384 REMARK 465 LYS B 385 REMARK 465 LYS B 386 REMARK 465 THR B 387 REMARK 465 ASP B 388 REMARK 465 GLU B 389 REMARK 465 GLN B 390 REMARK 465 SER B 391 REMARK 465 ASN B 392 REMARK 465 LYS B 393 REMARK 465 LYS B 394 REMARK 465 LEU B 395 REMARK 465 LEU B 396 REMARK 465 ASN B 397 REMARK 465 GLU B 398 REMARK 465 THR B 399 REMARK 465 ASP B 400 REMARK 465 GLY B 401 REMARK 465 ASP B 402 REMARK 465 ASN B 403 REMARK 465 SER B 404 REMARK 465 GLU B 405 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2050 O HOH B 2164 2.10 REMARK 500 OD1 ASP B 103 O HOH B 2052 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 41 -9.38 74.52 REMARK 500 THR A 208 -150.48 -114.91 REMARK 500 TRP A 306 62.42 -112.76 REMARK 500 PRO A 378 -172.70 -69.98 REMARK 500 SER B 90 -119.65 -142.58 REMARK 500 THR B 208 -151.08 -108.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1381 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1382 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UD5 RELATED DB: PDB REMARK 900 STRUCTURAL PLASTICITY OF CID1 PROVIDES A BASIS FOR ITS RNA TERMINAL REMARK 900 URIDYLYL TRANSFERASE ACTIVITY DBREF 4UD4 A 40 405 UNP O13833 CID1_SCHPO 40 405 DBREF 4UD4 B 40 405 UNP O13833 CID1_SCHPO 40 405 SEQADV 4UD4 ALA A 133 UNP O13833 LYS 133 ENGINEERED MUTATION SEQADV 4UD4 ALA A 137 UNP O13833 ARG 137 ENGINEERED MUTATION SEQADV 4UD4 ALA A 277 UNP O13833 ARG 277 ENGINEERED MUTATION SEQADV 4UD4 ALA A 282 UNP O13833 LYS 282 ENGINEERED MUTATION SEQADV 4UD4 ALA B 133 UNP O13833 LYS 133 ENGINEERED MUTATION SEQADV 4UD4 ALA B 137 UNP O13833 ARG 137 ENGINEERED MUTATION SEQADV 4UD4 ALA B 277 UNP O13833 ARG 277 ENGINEERED MUTATION SEQADV 4UD4 ALA B 282 UNP O13833 LYS 282 ENGINEERED MUTATION SEQRES 1 A 366 SER HIS LYS GLU PHE THR LYS PHE CYS TYR GLU VAL TYR SEQRES 2 A 366 ASN GLU ILE LYS ILE SER ASP LYS GLU PHE LYS GLU LYS SEQRES 3 A 366 ARG ALA ALA LEU ASP THR LEU ARG LEU CYS LEU LYS ARG SEQRES 4 A 366 ILE SER PRO ASP ALA GLU LEU VAL ALA PHE GLY SER LEU SEQRES 5 A 366 GLU SER GLY LEU ALA LEU LYS ASN SER ASP MET ASP LEU SEQRES 6 A 366 CYS VAL LEU MET ASP SER ARG VAL GLN SER ASP THR ILE SEQRES 7 A 366 ALA LEU GLN PHE TYR GLU GLU LEU ILE ALA GLU GLY PHE SEQRES 8 A 366 GLU GLY ALA PHE LEU GLN ALA ALA ARG ILE PRO ILE ILE SEQRES 9 A 366 LYS LEU THR SER ASP THR LYS ASN GLY PHE GLY ALA SER SEQRES 10 A 366 PHE GLN CYS ASP ILE GLY PHE ASN ASN ARG LEU ALA ILE SEQRES 11 A 366 HIS ASN THR LEU LEU LEU SER SER TYR THR LYS LEU ASP SEQRES 12 A 366 ALA ARG LEU LYS PRO MET VAL LEU LEU VAL LYS HIS TRP SEQRES 13 A 366 ALA LYS ARG LYS GLN ILE ASN SER PRO TYR PHE GLY THR SEQRES 14 A 366 LEU SER SER TYR GLY TYR VAL LEU MET VAL LEU TYR TYR SEQRES 15 A 366 LEU ILE HIS VAL ILE LYS PRO PRO VAL PHE PRO ASN LEU SEQRES 16 A 366 LEU LEU SER PRO LEU LYS GLN GLU LYS ILE VAL ASP GLY SEQRES 17 A 366 PHE ASP VAL GLY PHE ASP ASP LYS LEU GLU ASP ILE PRO SEQRES 18 A 366 PRO SER GLN ASN TYR SER SER LEU GLY SER LEU LEU HIS SEQRES 19 A 366 GLY PHE PHE ALA PHE TYR ALA TYR ALA PHE GLU PRO ARG SEQRES 20 A 366 GLU LYS VAL VAL THR PHE ARG ARG PRO ASP GLY TYR LEU SEQRES 21 A 366 THR LYS GLN GLU LYS GLY TRP THR SER ALA THR GLU HIS SEQRES 22 A 366 THR GLY SER ALA ASP GLN ILE ILE LYS ASP ARG TYR ILE SEQRES 23 A 366 LEU ALA ILE GLU ASP PRO PHE GLU ILE SER HIS ASN VAL SEQRES 24 A 366 GLY ARG THR VAL SER SER SER GLY LEU TYR ARG ILE ARG SEQRES 25 A 366 GLY GLU PHE MET ALA ALA SER ARG LEU LEU ASN SER ARG SEQRES 26 A 366 SER TYR PRO ILE PRO TYR ASP SER LEU PHE GLU GLU ALA SEQRES 27 A 366 PRO ILE PRO PRO ARG ARG GLN LYS LYS THR ASP GLU GLN SEQRES 28 A 366 SER ASN LYS LYS LEU LEU ASN GLU THR ASP GLY ASP ASN SEQRES 29 A 366 SER GLU SEQRES 1 B 366 SER HIS LYS GLU PHE THR LYS PHE CYS TYR GLU VAL TYR SEQRES 2 B 366 ASN GLU ILE LYS ILE SER ASP LYS GLU PHE LYS GLU LYS SEQRES 3 B 366 ARG ALA ALA LEU ASP THR LEU ARG LEU CYS LEU LYS ARG SEQRES 4 B 366 ILE SER PRO ASP ALA GLU LEU VAL ALA PHE GLY SER LEU SEQRES 5 B 366 GLU SER GLY LEU ALA LEU LYS ASN SER ASP MET ASP LEU SEQRES 6 B 366 CYS VAL LEU MET ASP SER ARG VAL GLN SER ASP THR ILE SEQRES 7 B 366 ALA LEU GLN PHE TYR GLU GLU LEU ILE ALA GLU GLY PHE SEQRES 8 B 366 GLU GLY ALA PHE LEU GLN ALA ALA ARG ILE PRO ILE ILE SEQRES 9 B 366 LYS LEU THR SER ASP THR LYS ASN GLY PHE GLY ALA SER SEQRES 10 B 366 PHE GLN CYS ASP ILE GLY PHE ASN ASN ARG LEU ALA ILE SEQRES 11 B 366 HIS ASN THR LEU LEU LEU SER SER TYR THR LYS LEU ASP SEQRES 12 B 366 ALA ARG LEU LYS PRO MET VAL LEU LEU VAL LYS HIS TRP SEQRES 13 B 366 ALA LYS ARG LYS GLN ILE ASN SER PRO TYR PHE GLY THR SEQRES 14 B 366 LEU SER SER TYR GLY TYR VAL LEU MET VAL LEU TYR TYR SEQRES 15 B 366 LEU ILE HIS VAL ILE LYS PRO PRO VAL PHE PRO ASN LEU SEQRES 16 B 366 LEU LEU SER PRO LEU LYS GLN GLU LYS ILE VAL ASP GLY SEQRES 17 B 366 PHE ASP VAL GLY PHE ASP ASP LYS LEU GLU ASP ILE PRO SEQRES 18 B 366 PRO SER GLN ASN TYR SER SER LEU GLY SER LEU LEU HIS SEQRES 19 B 366 GLY PHE PHE ALA PHE TYR ALA TYR ALA PHE GLU PRO ARG SEQRES 20 B 366 GLU LYS VAL VAL THR PHE ARG ARG PRO ASP GLY TYR LEU SEQRES 21 B 366 THR LYS GLN GLU LYS GLY TRP THR SER ALA THR GLU HIS SEQRES 22 B 366 THR GLY SER ALA ASP GLN ILE ILE LYS ASP ARG TYR ILE SEQRES 23 B 366 LEU ALA ILE GLU ASP PRO PHE GLU ILE SER HIS ASN VAL SEQRES 24 B 366 GLY ARG THR VAL SER SER SER GLY LEU TYR ARG ILE ARG SEQRES 25 B 366 GLY GLU PHE MET ALA ALA SER ARG LEU LEU ASN SER ARG SEQRES 26 B 366 SER TYR PRO ILE PRO TYR ASP SER LEU PHE GLU GLU ALA SEQRES 27 B 366 PRO ILE PRO PRO ARG ARG GLN LYS LYS THR ASP GLU GLN SEQRES 28 B 366 SER ASN LYS LYS LEU LEU ASN GLU THR ASP GLY ASP ASN SEQRES 29 B 366 SER GLU HET GOL B1381 6 HET GOL B1382 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *366(H2 O) HELIX 1 1 HIS A 41 LYS A 56 1 16 HELIX 2 2 SER A 58 SER A 80 1 23 HELIX 3 3 GLY A 89 GLY A 94 1 6 HELIX 4 4 SER A 114 GLU A 128 1 15 HELIX 5 5 ASN A 165 ASP A 182 1 18 HELIX 6 6 ARG A 184 LYS A 199 1 16 HELIX 7 7 SER A 203 GLY A 207 5 5 HELIX 8 8 SER A 210 VAL A 225 1 16 HELIX 9 9 LYS A 255 ILE A 259 5 5 HELIX 10 10 SER A 267 ALA A 282 1 16 HELIX 11 11 THR A 300 GLY A 305 1 6 HELIX 12 12 VAL A 338 VAL A 342 5 5 HELIX 13 13 SER A 343 ASN A 362 1 20 HELIX 14 14 PRO A 369 GLU A 375 5 7 HELIX 15 15 HIS B 41 LYS B 56 1 16 HELIX 16 16 SER B 58 SER B 80 1 23 HELIX 17 17 SER B 90 GLY B 94 5 5 HELIX 18 18 SER B 110 GLU B 128 1 19 HELIX 19 19 LEU B 167 ASP B 182 1 16 HELIX 20 20 ARG B 184 LYS B 199 1 16 HELIX 21 21 SER B 203 GLY B 207 5 5 HELIX 22 22 SER B 210 VAL B 225 1 16 HELIX 23 23 LYS B 255 ILE B 259 5 5 HELIX 24 24 SER B 267 ALA B 282 1 16 HELIX 25 25 THR B 300 GLY B 305 1 6 HELIX 26 26 SER B 343 ASN B 362 1 20 HELIX 27 27 PRO B 369 GLU B 375 5 7 SHEET 1 AA 5 GLU A 84 PHE A 88 0 SHEET 2 AA 5 MET A 102 LEU A 107 -1 O ASP A 103 N PHE A 88 SHEET 3 AA 5 CYS A 159 PHE A 163 1 O ASP A 160 N LEU A 104 SHEET 4 AA 5 ILE A 140 SER A 147 -1 O ILE A 143 N ILE A 161 SHEET 5 AA 5 GLU A 131 ALA A 137 -1 O GLU A 131 N THR A 146 SHEET 1 AB 2 ILE A 244 VAL A 245 0 SHEET 2 AB 2 PHE A 248 ASP A 249 -1 O PHE A 248 N VAL A 245 SHEET 1 BA 5 GLU B 84 ALA B 87 0 SHEET 2 BA 5 MET B 102 MET B 108 -1 O CYS B 105 N VAL B 86 SHEET 3 BA 5 CYS B 159 ASN B 165 1 O ASP B 160 N LEU B 104 SHEET 4 BA 5 ILE B 140 LEU B 145 -1 O ILE B 143 N ILE B 161 SHEET 5 BA 5 GLY B 132 ALA B 137 -1 O ALA B 133 N LYS B 144 SHEET 1 BB 2 ILE B 244 VAL B 245 0 SHEET 2 BB 2 PHE B 248 ASP B 249 -1 O PHE B 248 N VAL B 245 CISPEP 1 GLY A 152 PHE A 153 0 -1.11 CISPEP 2 LYS A 227 PRO A 228 0 -3.50 CISPEP 3 TYR A 366 PRO A 367 0 -0.34 CISPEP 4 LYS B 227 PRO B 228 0 -7.65 CISPEP 5 TYR B 366 PRO B 367 0 -1.49 SITE 1 AC1 3 GLU A 303 LYS B 240 GLU B 242 SITE 1 AC2 6 LYS B 199 ALA B 356 ALA B 357 SER B 372 SITE 2 AC2 6 LEU B 373 HOH B2106 CRYST1 58.960 62.290 65.500 76.34 81.08 63.16 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016961 -0.008582 -0.001063 0.00000 SCALE2 0.000000 0.017992 -0.003453 0.00000 SCALE3 0.000000 0.000000 0.015736 0.00000 MASTER 510 0 2 27 14 0 3 6 0 0 0 58 END