HEADER TRANSFERASE 12-JUL-14 4U0N TITLE STRUCTURE OF THE VIBRIO CHOLERAE DI-NUCLEOTIDE CYCLASE (DNCV) DELETION TITLE 2 MUTANT D-LOOP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC AMP-GMP SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-419; COMPND 5 SYNONYM: C-AMP-GMP SYNTHASE, DINUCLEOTIDE CYCLASE DNCV; COMPND 6 EC: 2.7.7.86; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE EL TOR N16961; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 GENE: DNCV, VC_0179; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS REGULATION, MUTATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.XIANG,D.Y.ZHU REVDAT 3 22-OCT-14 4U0N 1 JRNL REVDAT 2 24-SEP-14 4U0N 1 JRNL REVDAT 1 17-SEP-14 4U0N 0 JRNL AUTH D.ZHU,L.WANG,G.SHANG,X.LIU,J.ZHU,D.LU,L.WANG,B.KAN, JRNL AUTH 2 J.R.ZHANG,Y.XIANG JRNL TITL STRUCTURAL BIOCHEMISTRY OF A VIBRIO CHOLERAE DINUCLEOTIDE JRNL TITL 2 CYCLASE REVEALS CYCLASE ACTIVITY REGULATION BY FOLATES. JRNL REF MOL.CELL V. 55 931 2014 JRNL REFN ISSN 1097-2765 JRNL PMID 25201413 JRNL DOI 10.1016/J.MOLCEL.2014.08.001 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 50514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7361 - 5.5041 0.95 2658 156 0.2030 0.2275 REMARK 3 2 5.5041 - 4.3709 0.99 2728 129 0.1832 0.2148 REMARK 3 3 4.3709 - 3.8190 0.98 2639 155 0.1865 0.2328 REMARK 3 4 3.8190 - 3.4701 0.99 2676 143 0.2031 0.2639 REMARK 3 5 3.4701 - 3.2215 0.99 2663 143 0.2285 0.2382 REMARK 3 6 3.2215 - 3.0316 0.99 2685 149 0.2402 0.3040 REMARK 3 7 3.0316 - 2.8799 1.00 2636 155 0.2344 0.2994 REMARK 3 8 2.8799 - 2.7545 1.00 2637 155 0.2463 0.3366 REMARK 3 9 2.7545 - 2.6485 1.00 2714 127 0.2414 0.2809 REMARK 3 10 2.6485 - 2.5572 1.00 2679 127 0.2269 0.2817 REMARK 3 11 2.5572 - 2.4772 1.00 2666 129 0.2336 0.3064 REMARK 3 12 2.4772 - 2.4064 1.00 2666 154 0.2347 0.2711 REMARK 3 13 2.4064 - 2.3431 1.00 2618 151 0.2247 0.2507 REMARK 3 14 2.3431 - 2.2859 1.00 2692 140 0.2312 0.3001 REMARK 3 15 2.2859 - 2.2340 1.00 2618 124 0.2329 0.2675 REMARK 3 16 2.2340 - 2.1864 1.00 2712 146 0.2357 0.3205 REMARK 3 17 2.1864 - 2.1427 1.00 2634 138 0.2391 0.2739 REMARK 3 18 2.1427 - 2.1023 0.99 2637 135 0.2412 0.3038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6185 REMARK 3 ANGLE : 0.881 8348 REMARK 3 CHIRALITY : 0.063 904 REMARK 3 PLANARITY : 0.003 1078 REMARK 3 DIHEDRAL : 13.939 2370 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 142.5935-104.7108 30.1583 REMARK 3 T TENSOR REMARK 3 T11: 0.1488 T22: 0.1874 REMARK 3 T33: 0.2156 T12: -0.0011 REMARK 3 T13: 0.0326 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.0557 L22: 0.1668 REMARK 3 L33: 0.5391 L12: 0.0533 REMARK 3 L13: 0.3505 L23: 0.1624 REMARK 3 S TENSOR REMARK 3 S11: 0.0345 S12: -0.0523 S13: -0.0651 REMARK 3 S21: 0.0333 S22: -0.0116 S23: -0.0040 REMARK 3 S31: 0.0847 S32: -0.0262 S33: -0.0312 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4U0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.968 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50515 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 120.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4U0L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% W/V PET 3350, 0.2M MGCL2, 100MM REMARK 280 TRIS-HCL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.62650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ALA A 376 REMARK 465 LEU A 377 REMARK 465 PRO A 378 REMARK 465 ALA A 379 REMARK 465 PHE A 380 REMARK 465 ALA A 381 REMARK 465 GLN A 382 REMARK 465 GLU A 383 REMARK 465 LEU A 384 REMARK 465 GLU A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 ALA B 376 REMARK 465 LEU B 377 REMARK 465 PRO B 378 REMARK 465 ALA B 379 REMARK 465 PHE B 380 REMARK 465 ALA B 381 REMARK 465 GLN B 382 REMARK 465 GLU B 383 REMARK 465 LEU B 384 REMARK 465 GLU B 385 REMARK 465 HIS B 386 REMARK 465 HIS B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 465 HIS B 390 REMARK 465 HIS B 391 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 109 H16 TLL A 402 1.53 REMARK 500 O2 TLL A 402 O HOH A 684 2.08 REMARK 500 O PHE A 109 C16 TLL A 402 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 147 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 15 -67.04 -109.41 REMARK 500 PHE A 124 -69.38 -101.97 REMARK 500 SER A 145 -65.72 -104.68 REMARK 500 GLU A 203 -119.56 38.61 REMARK 500 SER A 206 -70.52 -136.30 REMARK 500 ARG A 364 -64.25 -134.18 REMARK 500 ASN B 15 -69.45 -109.35 REMARK 500 PHE B 115 68.72 67.51 REMARK 500 PHE B 124 -73.13 -101.61 REMARK 500 SER B 145 -110.71 53.91 REMARK 500 LYS B 148 -15.35 79.84 REMARK 500 GLU B 203 -119.65 42.23 REMARK 500 SER B 206 -17.01 87.83 REMARK 500 ARG B 364 -62.40 -133.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 131 OD1 REMARK 620 2 ASP A 133 OD1 106.5 REMARK 620 3 ASP A 133 OD2 116.5 48.0 REMARK 620 4 ASP A 193 OD2 86.8 95.5 139.7 REMARK 620 5 HOH A 585 O 142.1 109.2 96.9 77.6 REMARK 620 6 HOH A 588 O 76.4 175.8 133.6 81.6 67.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 131 OD1 REMARK 620 2 ASP B 133 OD1 105.0 REMARK 620 3 ASP B 193 OD2 83.2 103.2 REMARK 620 4 HOH B 602 O 79.2 168.3 88.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLL B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4U03 RELATED DB: PDB REMARK 900 RELATED ID: 4U0L RELATED DB: PDB REMARK 900 RELATED ID: 4U0M RELATED DB: PDB DBREF 4U0N A 1 383 UNP Q9KVG7 DNCV_VIBCH 1 419 DBREF 4U0N B 1 383 UNP Q9KVG7 DNCV_VIBCH 1 419 SEQADV 4U0N A UNP Q9KVG7 GLU 203 DELETION SEQADV 4U0N A UNP Q9KVG7 PHE 204 DELETION SEQADV 4U0N A UNP Q9KVG7 GLN 205 DELETION SEQADV 4U0N A UNP Q9KVG7 LYS 206 DELETION SEQADV 4U0N A UNP Q9KVG7 LYS 207 DELETION SEQADV 4U0N A UNP Q9KVG7 GLN 208 DELETION SEQADV 4U0N A UNP Q9KVG7 ILE 209 DELETION SEQADV 4U0N A UNP Q9KVG7 ALA 210 DELETION SEQADV 4U0N A UNP Q9KVG7 LEU 211 DELETION SEQADV 4U0N A UNP Q9KVG7 GLU 212 DELETION SEQADV 4U0N A UNP Q9KVG7 ALA 213 DELETION SEQADV 4U0N A UNP Q9KVG7 ASN 214 DELETION SEQADV 4U0N A UNP Q9KVG7 ARG 215 DELETION SEQADV 4U0N A UNP Q9KVG7 SER 216 DELETION SEQADV 4U0N A UNP Q9KVG7 PHE 217 DELETION SEQADV 4U0N A UNP Q9KVG7 VAL 218 DELETION SEQADV 4U0N A UNP Q9KVG7 LYS 219 DELETION SEQADV 4U0N A UNP Q9KVG7 GLY 220 DELETION SEQADV 4U0N A UNP Q9KVG7 ALA 221 DELETION SEQADV 4U0N A UNP Q9KVG7 ILE 222 DELETION SEQADV 4U0N A UNP Q9KVG7 PHE 223 DELETION SEQADV 4U0N A UNP Q9KVG7 GLU 224 DELETION SEQADV 4U0N A UNP Q9KVG7 SER 225 DELETION SEQADV 4U0N A UNP Q9KVG7 TYR 226 DELETION SEQADV 4U0N A UNP Q9KVG7 VAL 227 DELETION SEQADV 4U0N A UNP Q9KVG7 ALA 228 DELETION SEQADV 4U0N A UNP Q9KVG7 ASP 229 DELETION SEQADV 4U0N A UNP Q9KVG7 SER 230 DELETION SEQADV 4U0N A UNP Q9KVG7 ILE 231 DELETION SEQADV 4U0N A UNP Q9KVG7 THR 232 DELETION SEQADV 4U0N A UNP Q9KVG7 ASP 233 DELETION SEQADV 4U0N A UNP Q9KVG7 ASP 234 DELETION SEQADV 4U0N A UNP Q9KVG7 SER 235 DELETION SEQADV 4U0N A UNP Q9KVG7 GLU 236 DELETION SEQADV 4U0N A UNP Q9KVG7 THR 237 DELETION SEQADV 4U0N A UNP Q9KVG7 TYR 238 DELETION SEQADV 4U0N LEU A 384 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0N GLU A 385 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0N HIS A 386 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0N HIS A 387 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0N HIS A 388 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0N HIS A 389 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0N HIS A 390 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0N HIS A 391 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0N B UNP Q9KVG7 GLU 203 DELETION SEQADV 4U0N B UNP Q9KVG7 PHE 204 DELETION SEQADV 4U0N B UNP Q9KVG7 GLN 205 DELETION SEQADV 4U0N B UNP Q9KVG7 LYS 206 DELETION SEQADV 4U0N B UNP Q9KVG7 LYS 207 DELETION SEQADV 4U0N B UNP Q9KVG7 GLN 208 DELETION SEQADV 4U0N B UNP Q9KVG7 ILE 209 DELETION SEQADV 4U0N B UNP Q9KVG7 ALA 210 DELETION SEQADV 4U0N B UNP Q9KVG7 LEU 211 DELETION SEQADV 4U0N B UNP Q9KVG7 GLU 212 DELETION SEQADV 4U0N B UNP Q9KVG7 ALA 213 DELETION SEQADV 4U0N B UNP Q9KVG7 ASN 214 DELETION SEQADV 4U0N B UNP Q9KVG7 ARG 215 DELETION SEQADV 4U0N B UNP Q9KVG7 SER 216 DELETION SEQADV 4U0N B UNP Q9KVG7 PHE 217 DELETION SEQADV 4U0N B UNP Q9KVG7 VAL 218 DELETION SEQADV 4U0N B UNP Q9KVG7 LYS 219 DELETION SEQADV 4U0N B UNP Q9KVG7 GLY 220 DELETION SEQADV 4U0N B UNP Q9KVG7 ALA 221 DELETION SEQADV 4U0N B UNP Q9KVG7 ILE 222 DELETION SEQADV 4U0N B UNP Q9KVG7 PHE 223 DELETION SEQADV 4U0N B UNP Q9KVG7 GLU 224 DELETION SEQADV 4U0N B UNP Q9KVG7 SER 225 DELETION SEQADV 4U0N B UNP Q9KVG7 TYR 226 DELETION SEQADV 4U0N B UNP Q9KVG7 VAL 227 DELETION SEQADV 4U0N B UNP Q9KVG7 ALA 228 DELETION SEQADV 4U0N B UNP Q9KVG7 ASP 229 DELETION SEQADV 4U0N B UNP Q9KVG7 SER 230 DELETION SEQADV 4U0N B UNP Q9KVG7 ILE 231 DELETION SEQADV 4U0N B UNP Q9KVG7 THR 232 DELETION SEQADV 4U0N B UNP Q9KVG7 ASP 233 DELETION SEQADV 4U0N B UNP Q9KVG7 ASP 234 DELETION SEQADV 4U0N B UNP Q9KVG7 SER 235 DELETION SEQADV 4U0N B UNP Q9KVG7 GLU 236 DELETION SEQADV 4U0N B UNP Q9KVG7 THR 237 DELETION SEQADV 4U0N B UNP Q9KVG7 TYR 238 DELETION SEQADV 4U0N LEU B 384 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0N GLU B 385 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0N HIS B 386 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0N HIS B 387 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0N HIS B 388 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0N HIS B 389 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0N HIS B 390 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0N HIS B 391 UNP Q9KVG7 EXPRESSION TAG SEQRES 1 A 391 MET ARG MET THR TRP ASN PHE HIS GLN TYR TYR THR ASN SEQRES 2 A 391 ARG ASN ASP GLY LEU MET GLY LYS LEU VAL LEU THR ASP SEQRES 3 A 391 GLU GLU LYS ASN ASN LEU LYS ALA LEU ARG LYS ILE ILE SEQRES 4 A 391 ARG LEU ARG THR ARG ASP VAL PHE GLU GLU ALA LYS GLY SEQRES 5 A 391 ILE ALA LYS ALA VAL LYS LYS SER ALA LEU THR PHE GLU SEQRES 6 A 391 ILE ILE GLN GLU LYS VAL SER THR THR GLN ILE LYS HIS SEQRES 7 A 391 LEU SER ASP SER GLU GLN ARG GLU VAL ALA LYS LEU ILE SEQRES 8 A 391 TYR GLU MET ASP ASP ASP ALA ARG ASP GLU PHE LEU GLY SEQRES 9 A 391 LEU THR PRO ARG PHE TRP THR GLN GLY SER PHE GLN TYR SEQRES 10 A 391 ASP THR LEU ASN ARG PRO PHE GLN PRO GLY GLN GLU MET SEQRES 11 A 391 ASP ILE ASP ASP GLY THR TYR MET PRO MET PRO ILE PHE SEQRES 12 A 391 GLU SER GLU PRO LYS ILE GLY HIS SER LEU LEU ILE LEU SEQRES 13 A 391 LEU VAL ASP ALA SER LEU LYS SER LEU VAL ALA GLU ASN SEQRES 14 A 391 HIS GLY TRP LYS PHE GLU ALA LYS GLN THR CYS GLY ARG SEQRES 15 A 391 ILE LYS ILE GLU ALA GLU LYS THR HIS ILE ASP VAL PRO SEQRES 16 A 391 MET TYR ALA ILE PRO LYS ASP GLU LEU ASP SER GLU ASN SEQRES 17 A 391 VAL ASN LEU ALA LEU ARG GLU GLY ASP ARG LYS TRP ILE SEQRES 18 A 391 ASN SER ASP PRO LYS ILE VAL GLU ASP TRP PHE ASN ASP SEQRES 19 A 391 SER CYS ILE ARG ILE GLY LYS HIS LEU ARG LYS VAL CYS SEQRES 20 A 391 ARG PHE MET LYS ALA TRP ARG ASP ALA GLN TRP ASP VAL SEQRES 21 A 391 GLY GLY PRO SER SER ILE SER LEU MET ALA ALA THR VAL SEQRES 22 A 391 ASN ILE LEU ASP SER VAL ALA HIS ASP ALA SER ASP LEU SEQRES 23 A 391 GLY GLU THR MET LYS ILE ILE ALA LYS HIS LEU PRO SER SEQRES 24 A 391 GLU PHE ALA ARG GLY VAL GLU SER PRO ASP SER THR ASP SEQRES 25 A 391 GLU LYS PRO LEU PHE PRO PRO SER TYR LYS HIS GLY PRO SEQRES 26 A 391 ARG GLU MET ASP ILE MET SER LYS LEU GLU ARG LEU PRO SEQRES 27 A 391 GLU ILE LEU SER SER ALA GLU SER ALA ASP SER LYS SER SEQRES 28 A 391 GLU ALA LEU LYS LYS ILE ASN MET ALA PHE GLY ASN ARG SEQRES 29 A 391 VAL THR ASN SER GLU LEU ILE VAL LEU ALA LYS ALA LEU SEQRES 30 A 391 PRO ALA PHE ALA GLN GLU LEU GLU HIS HIS HIS HIS HIS SEQRES 31 A 391 HIS SEQRES 1 B 391 MET ARG MET THR TRP ASN PHE HIS GLN TYR TYR THR ASN SEQRES 2 B 391 ARG ASN ASP GLY LEU MET GLY LYS LEU VAL LEU THR ASP SEQRES 3 B 391 GLU GLU LYS ASN ASN LEU LYS ALA LEU ARG LYS ILE ILE SEQRES 4 B 391 ARG LEU ARG THR ARG ASP VAL PHE GLU GLU ALA LYS GLY SEQRES 5 B 391 ILE ALA LYS ALA VAL LYS LYS SER ALA LEU THR PHE GLU SEQRES 6 B 391 ILE ILE GLN GLU LYS VAL SER THR THR GLN ILE LYS HIS SEQRES 7 B 391 LEU SER ASP SER GLU GLN ARG GLU VAL ALA LYS LEU ILE SEQRES 8 B 391 TYR GLU MET ASP ASP ASP ALA ARG ASP GLU PHE LEU GLY SEQRES 9 B 391 LEU THR PRO ARG PHE TRP THR GLN GLY SER PHE GLN TYR SEQRES 10 B 391 ASP THR LEU ASN ARG PRO PHE GLN PRO GLY GLN GLU MET SEQRES 11 B 391 ASP ILE ASP ASP GLY THR TYR MET PRO MET PRO ILE PHE SEQRES 12 B 391 GLU SER GLU PRO LYS ILE GLY HIS SER LEU LEU ILE LEU SEQRES 13 B 391 LEU VAL ASP ALA SER LEU LYS SER LEU VAL ALA GLU ASN SEQRES 14 B 391 HIS GLY TRP LYS PHE GLU ALA LYS GLN THR CYS GLY ARG SEQRES 15 B 391 ILE LYS ILE GLU ALA GLU LYS THR HIS ILE ASP VAL PRO SEQRES 16 B 391 MET TYR ALA ILE PRO LYS ASP GLU LEU ASP SER GLU ASN SEQRES 17 B 391 VAL ASN LEU ALA LEU ARG GLU GLY ASP ARG LYS TRP ILE SEQRES 18 B 391 ASN SER ASP PRO LYS ILE VAL GLU ASP TRP PHE ASN ASP SEQRES 19 B 391 SER CYS ILE ARG ILE GLY LYS HIS LEU ARG LYS VAL CYS SEQRES 20 B 391 ARG PHE MET LYS ALA TRP ARG ASP ALA GLN TRP ASP VAL SEQRES 21 B 391 GLY GLY PRO SER SER ILE SER LEU MET ALA ALA THR VAL SEQRES 22 B 391 ASN ILE LEU ASP SER VAL ALA HIS ASP ALA SER ASP LEU SEQRES 23 B 391 GLY GLU THR MET LYS ILE ILE ALA LYS HIS LEU PRO SER SEQRES 24 B 391 GLU PHE ALA ARG GLY VAL GLU SER PRO ASP SER THR ASP SEQRES 25 B 391 GLU LYS PRO LEU PHE PRO PRO SER TYR LYS HIS GLY PRO SEQRES 26 B 391 ARG GLU MET ASP ILE MET SER LYS LEU GLU ARG LEU PRO SEQRES 27 B 391 GLU ILE LEU SER SER ALA GLU SER ALA ASP SER LYS SER SEQRES 28 B 391 GLU ALA LEU LYS LYS ILE ASN MET ALA PHE GLY ASN ARG SEQRES 29 B 391 VAL THR ASN SER GLU LEU ILE VAL LEU ALA LYS ALA LEU SEQRES 30 B 391 PRO ALA PHE ALA GLN GLU LEU GLU HIS HIS HIS HIS HIS SEQRES 31 B 391 HIS HET MG A 401 1 HET TLL A 402 71 HET MG B 401 1 HET TLL B 402 71 HETNAM MG MAGNESIUM ION HETNAM TLL N-[4-({[(6S)-2-AMINO-5-METHYL-4-OXO-1,4,5,6,7,8- HETNAM 2 TLL HEXAHYDROPTERIDIN-6-YL]METHYL}AMINO)BENZOYL]-L-GAMMA- HETNAM 3 TLL GLUTAMYL-L-GLUTAMIC ACID FORMUL 3 MG 2(MG 2+) FORMUL 4 TLL 2(C25 H32 N8 O9) FORMUL 7 HOH *386(H2 O) HELIX 1 AA1 PHE A 7 ASN A 13 1 7 HELIX 2 AA2 GLY A 17 VAL A 23 1 7 HELIX 3 AA3 THR A 25 SER A 60 1 36 HELIX 4 AA4 THR A 63 THR A 73 1 11 HELIX 5 AA5 THR A 74 LEU A 79 5 6 HELIX 6 AA6 SER A 80 MET A 94 1 15 HELIX 7 AA7 ASP A 95 GLY A 104 1 10 HELIX 8 AA8 GLY A 150 ASN A 169 1 20 HELIX 9 AA9 ASP A 224 GLY A 240 1 17 HELIX 10 AB1 LYS A 241 TRP A 258 1 18 HELIX 11 AB2 SER A 264 VAL A 279 1 16 HELIX 12 AB3 ASP A 285 ARG A 303 1 19 HELIX 13 AB4 PRO A 319 HIS A 323 5 5 HELIX 14 AB5 GLY A 324 SER A 346 1 23 HELIX 15 AB6 SER A 349 GLY A 362 1 14 HELIX 16 AB7 ASN A 367 ILE A 371 5 5 HELIX 17 AB8 PHE B 7 ASN B 13 1 7 HELIX 18 AB9 GLY B 17 VAL B 23 1 7 HELIX 19 AC1 THR B 25 SER B 60 1 36 HELIX 20 AC2 THR B 63 THR B 73 1 11 HELIX 21 AC3 THR B 74 LEU B 79 5 6 HELIX 22 AC4 SER B 80 MET B 94 1 15 HELIX 23 AC5 ASP B 95 GLY B 104 1 10 HELIX 24 AC6 PHE B 115 THR B 119 5 5 HELIX 25 AC7 GLY B 150 ASN B 169 1 20 HELIX 26 AC8 ASP B 224 GLY B 240 1 17 HELIX 27 AC9 LYS B 241 TRP B 258 1 18 HELIX 28 AD1 SER B 264 VAL B 279 1 16 HELIX 29 AD2 ASP B 285 ARG B 303 1 19 HELIX 30 AD3 PRO B 319 HIS B 323 5 5 HELIX 31 AD4 GLY B 324 SER B 346 1 23 HELIX 32 AD5 SER B 349 GLY B 362 1 14 HELIX 33 AD6 ASN B 367 ILE B 371 5 5 SHEET 1 AA1 2 TRP A 5 ASN A 6 0 SHEET 2 AA1 2 VAL A 372 LEU A 373 -1 O VAL A 372 N ASN A 6 SHEET 1 AA2 4 MET A 130 ASP A 133 0 SHEET 2 AA2 4 THR A 190 VAL A 194 1 O ASP A 193 N ILE A 132 SHEET 3 AA2 4 GLY A 181 ILE A 185 -1 N ILE A 185 O THR A 190 SHEET 4 AA2 4 TRP A 172 ALA A 176 -1 N LYS A 173 O LYS A 184 SHEET 1 AA3 4 THR A 136 MET A 140 0 SHEET 2 AA3 4 MET A 196 PRO A 200 1 O ILE A 199 N MET A 140 SHEET 3 AA3 4 ASN A 210 ALA A 212 -1 O ALA A 212 N MET A 196 SHEET 4 AA3 4 TRP A 220 ASN A 222 -1 O ILE A 221 N LEU A 211 SHEET 1 AA4 2 TRP B 5 ASN B 6 0 SHEET 2 AA4 2 VAL B 372 LEU B 373 -1 O VAL B 372 N ASN B 6 SHEET 1 AA5 5 ARG B 108 PHE B 109 0 SHEET 2 AA5 5 THR B 136 MET B 140 -1 O TYR B 137 N ARG B 108 SHEET 3 AA5 5 MET B 196 PRO B 200 1 O TYR B 197 N MET B 138 SHEET 4 AA5 5 ASN B 210 ALA B 212 -1 O ALA B 212 N MET B 196 SHEET 5 AA5 5 TRP B 220 ASN B 222 -1 O ILE B 221 N LEU B 211 SHEET 1 AA6 4 MET B 130 ASP B 133 0 SHEET 2 AA6 4 THR B 190 VAL B 194 1 O ASP B 193 N ILE B 132 SHEET 3 AA6 4 GLY B 181 ILE B 185 -1 N ILE B 185 O THR B 190 SHEET 4 AA6 4 TRP B 172 ALA B 176 -1 N LYS B 173 O LYS B 184 LINK OD1 ASP A 131 MG MG A 401 1555 1555 2.29 LINK OD1 ASP A 133 MG MG A 401 1555 1555 2.06 LINK OD2 ASP A 133 MG MG A 401 1555 1555 2.95 LINK OD2 ASP A 193 MG MG A 401 1555 1555 2.08 LINK OD1 ASP B 131 MG MG B 401 1555 1555 2.27 LINK OD1 ASP B 133 MG MG B 401 1555 1555 2.15 LINK OD2 ASP B 193 MG MG B 401 1555 1555 2.05 LINK MG MG A 401 O HOH A 585 1555 1555 2.09 LINK MG MG A 401 O HOH A 588 1555 1555 2.10 LINK MG MG B 401 O HOH B 602 1555 1555 2.09 SITE 1 AC1 5 ASP A 131 ASP A 133 ASP A 193 HOH A 585 SITE 2 AC1 5 HOH A 588 SITE 1 AC2 12 LYS A 37 ARG A 40 THR A 106 ARG A 108 SITE 2 AC2 12 PHE A 109 TRP A 110 ILE A 199 ASP A 205 SITE 3 AC2 12 ASP A 224 LYS A 226 HOH A 609 HOH A 684 SITE 1 AC3 4 ASP B 131 ASP B 133 ASP B 193 HOH B 602 SITE 1 AC4 12 LYS B 37 ARG B 40 LEU B 41 ARG B 108 SITE 2 AC4 12 PHE B 109 TRP B 110 ILE B 199 ASP B 205 SITE 3 AC4 12 SER B 206 ASP B 224 LYS B 226 HOH B 702 CRYST1 73.605 49.253 122.233 90.00 98.66 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013586 0.000000 0.002069 0.00000 SCALE2 0.000000 0.020303 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008275 0.00000 MASTER 379 0 4 33 21 0 9 6 0 0 0 62 END