HEADER TRANSFERASE 12-JUL-14 4U0M TITLE STRUCTURE OF THE VIBRIO CHOLERAE DI-NUCLEOTIDE CYCLASE (DNCV) MUTANT TITLE 2 D193N IN COMPLEX WITH ATP, GTP AND 5MTHFGLU2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC AMP-GMP SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-419; COMPND 5 SYNONYM: C-AMP-GMP SYNTHASE,DINUCLEOTIDE CYCLASE DNCV; COMPND 6 EC: 2.7.7.86; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE EL TOR N16961; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 GENE: DNCV, VC_0179; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS REGULATION, MUTATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.ZHU,Y.XIANG REVDAT 3 22-OCT-14 4U0M 1 JRNL REVDAT 2 24-SEP-14 4U0M 1 JRNL REVDAT 1 17-SEP-14 4U0M 0 JRNL AUTH D.ZHU,L.WANG,G.SHANG,X.LIU,J.ZHU,D.LU,L.WANG,B.KAN, JRNL AUTH 2 J.R.ZHANG,Y.XIANG JRNL TITL STRUCTURAL BIOCHEMISTRY OF A VIBRIO CHOLERAE DINUCLEOTIDE JRNL TITL 2 CYCLASE REVEALS CYCLASE ACTIVITY REGULATION BY FOLATES. JRNL REF MOL.CELL V. 55 931 2014 JRNL REFN ISSN 1097-2765 JRNL PMID 25201413 JRNL DOI 10.1016/J.MOLCEL.2014.08.001 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 38293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5748 - 5.5276 0.97 2657 133 0.1843 0.1946 REMARK 3 2 5.5276 - 4.3888 0.99 2614 150 0.1632 0.2047 REMARK 3 3 4.3888 - 3.8345 0.99 2620 118 0.1710 0.2430 REMARK 3 4 3.8345 - 3.4841 0.99 2629 136 0.1843 0.2233 REMARK 3 5 3.4841 - 3.2344 1.00 2626 123 0.1996 0.2418 REMARK 3 6 3.2344 - 3.0438 1.00 2580 148 0.2175 0.2785 REMARK 3 7 3.0438 - 2.8914 1.00 2622 134 0.2221 0.3502 REMARK 3 8 2.8914 - 2.7656 1.00 2614 139 0.2309 0.2629 REMARK 3 9 2.7656 - 2.6591 1.00 2604 133 0.2234 0.2783 REMARK 3 10 2.6591 - 2.5674 1.00 2570 158 0.2202 0.2953 REMARK 3 11 2.5674 - 2.4871 1.00 2582 132 0.2304 0.3228 REMARK 3 12 2.4871 - 2.4160 1.00 2643 127 0.2291 0.3329 REMARK 3 13 2.4160 - 2.3524 1.00 2567 159 0.2360 0.2769 REMARK 3 14 2.3524 - 2.2950 0.94 2445 130 0.2459 0.3487 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 6605 REMARK 3 ANGLE : 0.704 8948 REMARK 3 CHIRALITY : 0.036 960 REMARK 3 PLANARITY : 0.002 1126 REMARK 3 DIHEDRAL : 12.791 2532 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 65.6854 8.3343 177.1490 REMARK 3 T TENSOR REMARK 3 T11: 0.1813 T22: 0.1434 REMARK 3 T33: 0.2180 T12: -0.0287 REMARK 3 T13: -0.0182 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.1520 L22: 0.3161 REMARK 3 L33: 1.8644 L12: 0.0378 REMARK 3 L13: -0.1738 L23: -0.2071 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: -0.0605 S13: -0.0016 REMARK 3 S21: 0.0344 S22: -0.0459 S23: -0.0986 REMARK 3 S31: -0.1575 S32: 0.2666 S33: 0.0462 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4U0M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000202584. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.968 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38293 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 103.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4U0L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 3350, 200MM NACL, 100MM REMARK 280 TRIS-HCL, 5MM GTP, 5MM ATP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.93000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 SER A 216 REMARK 465 PHE A 217 REMARK 465 VAL A 218 REMARK 465 LYS A 219 REMARK 465 GLY A 220 REMARK 465 ALA A 221 REMARK 465 ILE A 222 REMARK 465 PHE A 223 REMARK 465 GLU A 224 REMARK 465 SER A 225 REMARK 465 TYR A 226 REMARK 465 VAL A 227 REMARK 465 ALA A 228 REMARK 465 ASP A 229 REMARK 465 SER A 230 REMARK 465 ILE A 231 REMARK 465 THR A 232 REMARK 465 ASP A 233 REMARK 465 ASP A 234 REMARK 465 SER A 235 REMARK 465 GLU A 236 REMARK 465 THR A 237 REMARK 465 ALA A 412 REMARK 465 LEU A 413 REMARK 465 PRO A 414 REMARK 465 ALA A 415 REMARK 465 PHE A 416 REMARK 465 ALA A 417 REMARK 465 GLN A 418 REMARK 465 GLU A 419 REMARK 465 LEU A 420 REMARK 465 GLU A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 SER B 216 REMARK 465 PHE B 217 REMARK 465 VAL B 218 REMARK 465 LYS B 219 REMARK 465 GLY B 220 REMARK 465 ALA B 221 REMARK 465 ILE B 222 REMARK 465 PHE B 223 REMARK 465 GLU B 224 REMARK 465 SER B 225 REMARK 465 TYR B 226 REMARK 465 VAL B 227 REMARK 465 ALA B 228 REMARK 465 ASP B 229 REMARK 465 SER B 230 REMARK 465 ILE B 231 REMARK 465 THR B 232 REMARK 465 ASP B 233 REMARK 465 ASP B 234 REMARK 465 SER B 235 REMARK 465 GLU B 236 REMARK 465 ALA B 412 REMARK 465 LEU B 413 REMARK 465 PRO B 414 REMARK 465 ALA B 415 REMARK 465 PHE B 416 REMARK 465 ALA B 417 REMARK 465 GLN B 418 REMARK 465 GLU B 419 REMARK 465 LEU B 420 REMARK 465 GLU B 421 REMARK 465 HIS B 422 REMARK 465 HIS B 423 REMARK 465 HIS B 424 REMARK 465 HIS B 425 REMARK 465 HIS B 426 REMARK 465 HIS B 427 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 15 -66.89 -104.36 REMARK 500 LYS A 59 -73.19 -64.84 REMARK 500 PHE A 124 -71.01 -114.14 REMARK 500 GLU A 144 -61.17 -96.98 REMARK 500 SER A 145 -75.45 -101.77 REMARK 500 ARG A 400 -58.28 -126.03 REMARK 500 ASN B 15 -70.74 -105.79 REMARK 500 ASP B 133 78.87 -102.28 REMARK 500 SER B 145 -109.37 66.73 REMARK 500 TYR B 238 -135.95 59.73 REMARK 500 ARG B 250 -70.38 -88.90 REMARK 500 SER B 259 84.55 -150.98 REMARK 500 ARG B 400 -60.03 -127.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 766 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B 760 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B 779 DISTANCE = 5.96 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 131 OD1 REMARK 620 2 ASP A 133 OD2 92.6 REMARK 620 3 GTP A 501 O3G 89.4 168.2 REMARK 620 4 GTP A 501 O2B 147.2 103.8 69.1 REMARK 620 5 GTP A 501 O2A 130.0 110.5 76.7 70.3 REMARK 620 6 HOH A 763 O 70.7 79.9 89.8 84.3 154.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 131 OD1 REMARK 620 2 ASP B 133 OD2 99.0 REMARK 620 3 GTP B 501 O3G 96.3 158.6 REMARK 620 4 GTP B 501 O2B 155.5 104.6 63.0 REMARK 620 5 GTP B 501 O2A 104.3 100.1 90.6 65.4 REMARK 620 6 HOH B 724 O 81.8 108.2 59.3 96.8 149.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4U03 RELATED DB: PDB REMARK 900 RELATED ID: 4U0L RELATED DB: PDB REMARK 900 RELATED ID: 4U0N RELATED DB: PDB DBREF 4U0M A 1 419 UNP Q9KVG7 DNCV_VIBCH 1 419 DBREF 4U0M B 1 419 UNP Q9KVG7 DNCV_VIBCH 1 419 SEQADV 4U0M ASN A 193 UNP Q9KVG7 ASP 193 ENGINEERED MUTATION SEQADV 4U0M LEU A 420 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0M GLU A 421 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0M HIS A 422 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0M HIS A 423 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0M HIS A 424 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0M HIS A 425 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0M HIS A 426 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0M HIS A 427 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0M ASN B 193 UNP Q9KVG7 ASP 193 ENGINEERED MUTATION SEQADV 4U0M LEU B 420 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0M GLU B 421 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0M HIS B 422 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0M HIS B 423 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0M HIS B 424 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0M HIS B 425 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0M HIS B 426 UNP Q9KVG7 EXPRESSION TAG SEQADV 4U0M HIS B 427 UNP Q9KVG7 EXPRESSION TAG SEQRES 1 A 427 MET ARG MET THR TRP ASN PHE HIS GLN TYR TYR THR ASN SEQRES 2 A 427 ARG ASN ASP GLY LEU MET GLY LYS LEU VAL LEU THR ASP SEQRES 3 A 427 GLU GLU LYS ASN ASN LEU LYS ALA LEU ARG LYS ILE ILE SEQRES 4 A 427 ARG LEU ARG THR ARG ASP VAL PHE GLU GLU ALA LYS GLY SEQRES 5 A 427 ILE ALA LYS ALA VAL LYS LYS SER ALA LEU THR PHE GLU SEQRES 6 A 427 ILE ILE GLN GLU LYS VAL SER THR THR GLN ILE LYS HIS SEQRES 7 A 427 LEU SER ASP SER GLU GLN ARG GLU VAL ALA LYS LEU ILE SEQRES 8 A 427 TYR GLU MET ASP ASP ASP ALA ARG ASP GLU PHE LEU GLY SEQRES 9 A 427 LEU THR PRO ARG PHE TRP THR GLN GLY SER PHE GLN TYR SEQRES 10 A 427 ASP THR LEU ASN ARG PRO PHE GLN PRO GLY GLN GLU MET SEQRES 11 A 427 ASP ILE ASP ASP GLY THR TYR MET PRO MET PRO ILE PHE SEQRES 12 A 427 GLU SER GLU PRO LYS ILE GLY HIS SER LEU LEU ILE LEU SEQRES 13 A 427 LEU VAL ASP ALA SER LEU LYS SER LEU VAL ALA GLU ASN SEQRES 14 A 427 HIS GLY TRP LYS PHE GLU ALA LYS GLN THR CYS GLY ARG SEQRES 15 A 427 ILE LYS ILE GLU ALA GLU LYS THR HIS ILE ASN VAL PRO SEQRES 16 A 427 MET TYR ALA ILE PRO LYS ASP GLU PHE GLN LYS LYS GLN SEQRES 17 A 427 ILE ALA LEU GLU ALA ASN ARG SER PHE VAL LYS GLY ALA SEQRES 18 A 427 ILE PHE GLU SER TYR VAL ALA ASP SER ILE THR ASP ASP SEQRES 19 A 427 SER GLU THR TYR GLU LEU ASP SER GLU ASN VAL ASN LEU SEQRES 20 A 427 ALA LEU ARG GLU GLY ASP ARG LYS TRP ILE ASN SER ASP SEQRES 21 A 427 PRO LYS ILE VAL GLU ASP TRP PHE ASN ASP SER CYS ILE SEQRES 22 A 427 ARG ILE GLY LYS HIS LEU ARG LYS VAL CYS ARG PHE MET SEQRES 23 A 427 LYS ALA TRP ARG ASP ALA GLN TRP ASP VAL GLY GLY PRO SEQRES 24 A 427 SER SER ILE SER LEU MET ALA ALA THR VAL ASN ILE LEU SEQRES 25 A 427 ASP SER VAL ALA HIS ASP ALA SER ASP LEU GLY GLU THR SEQRES 26 A 427 MET LYS ILE ILE ALA LYS HIS LEU PRO SER GLU PHE ALA SEQRES 27 A 427 ARG GLY VAL GLU SER PRO ASP SER THR ASP GLU LYS PRO SEQRES 28 A 427 LEU PHE PRO PRO SER TYR LYS HIS GLY PRO ARG GLU MET SEQRES 29 A 427 ASP ILE MET SER LYS LEU GLU ARG LEU PRO GLU ILE LEU SEQRES 30 A 427 SER SER ALA GLU SER ALA ASP SER LYS SER GLU ALA LEU SEQRES 31 A 427 LYS LYS ILE ASN MET ALA PHE GLY ASN ARG VAL THR ASN SEQRES 32 A 427 SER GLU LEU ILE VAL LEU ALA LYS ALA LEU PRO ALA PHE SEQRES 33 A 427 ALA GLN GLU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 427 MET ARG MET THR TRP ASN PHE HIS GLN TYR TYR THR ASN SEQRES 2 B 427 ARG ASN ASP GLY LEU MET GLY LYS LEU VAL LEU THR ASP SEQRES 3 B 427 GLU GLU LYS ASN ASN LEU LYS ALA LEU ARG LYS ILE ILE SEQRES 4 B 427 ARG LEU ARG THR ARG ASP VAL PHE GLU GLU ALA LYS GLY SEQRES 5 B 427 ILE ALA LYS ALA VAL LYS LYS SER ALA LEU THR PHE GLU SEQRES 6 B 427 ILE ILE GLN GLU LYS VAL SER THR THR GLN ILE LYS HIS SEQRES 7 B 427 LEU SER ASP SER GLU GLN ARG GLU VAL ALA LYS LEU ILE SEQRES 8 B 427 TYR GLU MET ASP ASP ASP ALA ARG ASP GLU PHE LEU GLY SEQRES 9 B 427 LEU THR PRO ARG PHE TRP THR GLN GLY SER PHE GLN TYR SEQRES 10 B 427 ASP THR LEU ASN ARG PRO PHE GLN PRO GLY GLN GLU MET SEQRES 11 B 427 ASP ILE ASP ASP GLY THR TYR MET PRO MET PRO ILE PHE SEQRES 12 B 427 GLU SER GLU PRO LYS ILE GLY HIS SER LEU LEU ILE LEU SEQRES 13 B 427 LEU VAL ASP ALA SER LEU LYS SER LEU VAL ALA GLU ASN SEQRES 14 B 427 HIS GLY TRP LYS PHE GLU ALA LYS GLN THR CYS GLY ARG SEQRES 15 B 427 ILE LYS ILE GLU ALA GLU LYS THR HIS ILE ASN VAL PRO SEQRES 16 B 427 MET TYR ALA ILE PRO LYS ASP GLU PHE GLN LYS LYS GLN SEQRES 17 B 427 ILE ALA LEU GLU ALA ASN ARG SER PHE VAL LYS GLY ALA SEQRES 18 B 427 ILE PHE GLU SER TYR VAL ALA ASP SER ILE THR ASP ASP SEQRES 19 B 427 SER GLU THR TYR GLU LEU ASP SER GLU ASN VAL ASN LEU SEQRES 20 B 427 ALA LEU ARG GLU GLY ASP ARG LYS TRP ILE ASN SER ASP SEQRES 21 B 427 PRO LYS ILE VAL GLU ASP TRP PHE ASN ASP SER CYS ILE SEQRES 22 B 427 ARG ILE GLY LYS HIS LEU ARG LYS VAL CYS ARG PHE MET SEQRES 23 B 427 LYS ALA TRP ARG ASP ALA GLN TRP ASP VAL GLY GLY PRO SEQRES 24 B 427 SER SER ILE SER LEU MET ALA ALA THR VAL ASN ILE LEU SEQRES 25 B 427 ASP SER VAL ALA HIS ASP ALA SER ASP LEU GLY GLU THR SEQRES 26 B 427 MET LYS ILE ILE ALA LYS HIS LEU PRO SER GLU PHE ALA SEQRES 27 B 427 ARG GLY VAL GLU SER PRO ASP SER THR ASP GLU LYS PRO SEQRES 28 B 427 LEU PHE PRO PRO SER TYR LYS HIS GLY PRO ARG GLU MET SEQRES 29 B 427 ASP ILE MET SER LYS LEU GLU ARG LEU PRO GLU ILE LEU SEQRES 30 B 427 SER SER ALA GLU SER ALA ASP SER LYS SER GLU ALA LEU SEQRES 31 B 427 LYS LYS ILE ASN MET ALA PHE GLY ASN ARG VAL THR ASN SEQRES 32 B 427 SER GLU LEU ILE VAL LEU ALA LYS ALA LEU PRO ALA PHE SEQRES 33 B 427 ALA GLN GLU LEU GLU HIS HIS HIS HIS HIS HIS HET GTP A 501 32 HET ATP A 502 31 HET MG A 503 1 HET TLL A 504 71 HET GTP B 501 32 HET ATP B 502 62 HET MG B 503 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM TLL N-[4-({[(6S)-2-AMINO-5-METHYL-4-OXO-1,4,5,6,7,8- HETNAM 2 TLL HEXAHYDROPTERIDIN-6-YL]METHYL}AMINO)BENZOYL]-L-GAMMA- HETNAM 3 TLL GLUTAMYL-L-GLUTAMIC ACID FORMUL 3 GTP 2(C10 H16 N5 O14 P3) FORMUL 4 ATP 2(C10 H16 N5 O13 P3) FORMUL 5 MG 2(MG 2+) FORMUL 6 TLL C25 H32 N8 O9 FORMUL 10 HOH *377(H2 O) HELIX 1 AA1 PHE A 7 ASN A 13 1 7 HELIX 2 AA2 GLY A 17 VAL A 23 1 7 HELIX 3 AA3 THR A 25 SER A 60 1 36 HELIX 4 AA4 THR A 63 THR A 74 1 12 HELIX 5 AA5 GLN A 75 LEU A 79 5 5 HELIX 6 AA6 SER A 80 GLU A 93 1 14 HELIX 7 AA7 ASP A 95 GLY A 104 1 10 HELIX 8 AA8 GLY A 150 ALA A 167 1 18 HELIX 9 AA9 LYS A 201 ARG A 215 1 15 HELIX 10 AB1 ASP A 241 ASN A 244 5 4 HELIX 11 AB2 PRO A 261 GLY A 276 1 16 HELIX 12 AB3 LYS A 277 TRP A 294 1 18 HELIX 13 AB4 SER A 300 VAL A 315 1 16 HELIX 14 AB5 ASP A 321 GLY A 340 1 20 HELIX 15 AB6 PRO A 355 HIS A 359 5 5 HELIX 16 AB7 GLY A 360 SER A 382 1 23 HELIX 17 AB8 SER A 385 GLY A 398 1 14 HELIX 18 AB9 ASN A 403 ILE A 407 5 5 HELIX 19 AC1 PHE B 7 ASN B 13 1 7 HELIX 20 AC2 GLY B 17 VAL B 23 1 7 HELIX 21 AC3 THR B 25 SER B 60 1 36 HELIX 22 AC4 THR B 63 SER B 72 1 10 HELIX 23 AC5 THR B 73 LEU B 79 5 7 HELIX 24 AC6 SER B 80 MET B 94 1 15 HELIX 25 AC7 ASP B 95 GLY B 104 1 10 HELIX 26 AC8 GLY B 150 ALA B 167 1 18 HELIX 27 AC9 LYS B 201 ILE B 209 1 9 HELIX 28 AD1 PRO B 261 GLY B 276 1 16 HELIX 29 AD2 LYS B 277 TRP B 294 1 18 HELIX 30 AD3 SER B 300 VAL B 315 1 16 HELIX 31 AD4 ASP B 321 ARG B 339 1 19 HELIX 32 AD5 PRO B 355 HIS B 359 5 5 HELIX 33 AD6 GLY B 360 SER B 382 1 23 HELIX 34 AD7 SER B 385 GLY B 398 1 14 HELIX 35 AD8 ASN B 403 ILE B 407 5 5 SHEET 1 AA1 2 TRP A 5 ASN A 6 0 SHEET 2 AA1 2 VAL A 408 LEU A 409 -1 O VAL A 408 N ASN A 6 SHEET 1 AA2 5 ARG A 108 GLN A 112 0 SHEET 2 AA2 5 MET A 130 MET A 140 -1 O ASP A 133 N GLN A 112 SHEET 3 AA2 5 THR A 190 VAL A 194 1 O ASN A 193 N ILE A 132 SHEET 4 AA2 5 GLY A 181 ILE A 185 -1 N ILE A 185 O THR A 190 SHEET 5 AA2 5 TRP A 172 ALA A 176 -1 N LYS A 173 O LYS A 184 SHEET 1 AA3 5 ARG A 108 GLN A 112 0 SHEET 2 AA3 5 MET A 130 MET A 140 -1 O ASP A 133 N GLN A 112 SHEET 3 AA3 5 MET A 196 PRO A 200 1 O TYR A 197 N THR A 136 SHEET 4 AA3 5 ASN A 246 ALA A 248 -1 O ALA A 248 N MET A 196 SHEET 5 AA3 5 TRP A 256 ASN A 258 -1 O ILE A 257 N LEU A 247 SHEET 1 AA4 2 TRP B 5 ASN B 6 0 SHEET 2 AA4 2 VAL B 408 LEU B 409 -1 O VAL B 408 N ASN B 6 SHEET 1 AA5 5 ARG B 108 GLN B 112 0 SHEET 2 AA5 5 MET B 130 MET B 140 -1 O ASP B 133 N GLN B 112 SHEET 3 AA5 5 THR B 190 VAL B 194 1 O HIS B 191 N MET B 130 SHEET 4 AA5 5 GLY B 181 ILE B 185 -1 N ILE B 185 O THR B 190 SHEET 5 AA5 5 TRP B 172 ALA B 176 -1 N LYS B 173 O LYS B 184 SHEET 1 AA6 5 ARG B 108 GLN B 112 0 SHEET 2 AA6 5 MET B 130 MET B 140 -1 O ASP B 133 N GLN B 112 SHEET 3 AA6 5 MET B 196 PRO B 200 1 O TYR B 197 N THR B 136 SHEET 4 AA6 5 ASN B 246 ALA B 248 -1 O ALA B 248 N MET B 196 SHEET 5 AA6 5 TRP B 256 ASN B 258 -1 O ILE B 257 N LEU B 247 LINK OD1 ASP A 131 MG MG A 503 1555 1555 2.07 LINK OD2 ASP A 133 MG MG A 503 1555 1555 2.21 LINK OD1 ASP B 131 MG MG B 503 1555 1555 2.16 LINK OD2 ASP B 133 MG MG B 503 1555 1555 2.22 LINK O3G GTP A 501 MG MG A 503 1555 1555 2.32 LINK O2B GTP A 501 MG MG A 503 1555 1555 2.14 LINK O2A GTP A 501 MG MG A 503 1555 1555 2.04 LINK MG MG A 503 O HOH A 763 1555 1555 2.36 LINK O3G GTP B 501 MG MG B 503 1555 1555 2.91 LINK O2B GTP B 501 MG MG B 503 1555 1555 2.13 LINK O2A GTP B 501 MG MG B 503 1555 1555 2.40 LINK MG MG B 503 O HOH B 724 1555 1555 2.20 SITE 1 AC1 22 GLN A 112 GLY A 113 SER A 114 TYR A 117 SITE 2 AC1 22 ASP A 131 ASP A 133 VAL A 264 LYS A 287 SITE 3 AC1 22 SER A 301 ASP A 348 LEU A 352 ATP A 502 SITE 4 AC1 22 MG A 503 HOH A 656 HOH A 681 HOH A 685 SITE 5 AC1 22 HOH A 689 HOH A 692 HOH A 699 HOH A 720 SITE 6 AC1 22 HOH A 763 HOH A 774 SITE 1 AC2 9 GLN A 112 ASP A 133 LYS A 177 THR A 179 SITE 2 AC2 9 ARG A 182 ASN A 193 LEU A 247 SER A 259 SITE 3 AC2 9 GTP A 501 SITE 1 AC3 4 ASP A 131 ASP A 133 GTP A 501 HOH A 763 SITE 1 AC4 18 ARG A 36 ARG A 40 ARG A 44 ARG A 108 SITE 2 AC4 18 PHE A 109 TRP A 110 THR A 111 GLN A 116 SITE 3 AC4 18 TYR A 137 PHE A 204 GLN A 208 GLU A 239 SITE 4 AC4 18 LEU A 240 ASP A 260 PRO A 261 LYS A 262 SITE 5 AC4 18 HOH A 760 HOH A 787 SITE 1 AC5 25 GLN B 112 GLY B 113 SER B 114 TYR B 117 SITE 2 AC5 25 ASP B 131 ASP B 133 VAL B 264 LYS B 287 SITE 3 AC5 25 SER B 301 ASP B 345 ASP B 348 LEU B 352 SITE 4 AC5 25 ATP B 502 MG B 503 HOH B 649 HOH B 668 SITE 5 AC5 25 HOH B 678 HOH B 685 HOH B 708 HOH B 724 SITE 6 AC5 25 HOH B 730 HOH B 739 HOH B 765 HOH B 766 SITE 7 AC5 25 HOH B 778 SITE 1 AC6 15 ASP B 131 ASP B 133 LYS B 177 THR B 179 SITE 2 AC6 15 ARG B 182 HIS B 191 ASN B 193 SER B 259 SITE 3 AC6 15 GTP B 501 HOH B 695 HOH B 702 HOH B 708 SITE 4 AC6 15 HOH B 739 HOH B 762 HOH B 776 SITE 1 AC7 4 ASP B 131 ASP B 133 GTP B 501 HOH B 724 CRYST1 69.898 59.860 104.185 90.00 95.55 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014307 0.000000 0.001390 0.00000 SCALE2 0.000000 0.016706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009644 0.00000 MASTER 415 0 7 35 24 0 27 6 0 0 0 66 END