HEADER TRANSLATION 02-JUN-14 4TN1 TITLE TRANSLATION INITIATION FACTOR EIF5B (517-858) MUTANT D533R FROM C. TITLE 2 THERMOPHILUM, BOUND TO GTPGAMMAS COMPND MOL_ID: 1; COMPND 2 MOLECULE: EIF5B; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: G DOMAIN AND DOMAIN II SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 209285; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TRANSLATION, TRANSLATION FACTOR, GTPASE, INITIATION, RIBOSOME EXPDTA X-RAY DIFFRACTION AUTHOR B.KUHLE,R.FICNER REVDAT 5 20-FEB-19 4TN1 1 REMARK LINK REVDAT 4 24-FEB-16 4TN1 1 AUTHOR REVDAT 3 24-DEC-14 4TN1 1 DBREF REVDAT 2 19-NOV-14 4TN1 1 JRNL REVDAT 1 24-SEP-14 4TN1 0 JRNL AUTH B.KUHLE,R.FICNER JRNL TITL A MONOVALENT CATION ACTS AS STRUCTURAL AND CATALYTIC JRNL TITL 2 COFACTOR IN TRANSLATIONAL GTPASES. JRNL REF EMBO J. V. 33 2547 2014 JRNL REFN ESSN 1460-2075 JRNL PMID 25225612 JRNL DOI 10.15252/EMBJ.201488517 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1690) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 21700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5050 - 5.4975 1.00 2753 145 0.2001 0.2270 REMARK 3 2 5.4975 - 4.3645 1.00 2622 138 0.1704 0.2178 REMARK 3 3 4.3645 - 3.8130 1.00 2575 136 0.1820 0.2368 REMARK 3 4 3.8130 - 3.4645 1.00 2561 135 0.2027 0.2629 REMARK 3 5 3.4645 - 3.2163 1.00 2538 133 0.2343 0.2954 REMARK 3 6 3.2163 - 3.0267 1.00 2533 134 0.2474 0.2991 REMARK 3 7 3.0267 - 2.8751 1.00 2538 132 0.2677 0.3756 REMARK 3 8 2.8751 - 2.7500 0.99 2495 132 0.2898 0.3763 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5302 REMARK 3 ANGLE : 1.031 7164 REMARK 3 CHIRALITY : 0.040 820 REMARK 3 PLANARITY : 0.005 919 REMARK 3 DIHEDRAL : 16.370 2028 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 517 THROUGH 535 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5648 -31.7505 -14.8006 REMARK 3 T TENSOR REMARK 3 T11: 0.3217 T22: 0.3858 REMARK 3 T33: 0.4290 T12: 0.0608 REMARK 3 T13: -0.0604 T23: -0.0637 REMARK 3 L TENSOR REMARK 3 L11: 5.6542 L22: 1.5144 REMARK 3 L33: 2.2547 L12: 1.2340 REMARK 3 L13: 2.9098 L23: 0.4152 REMARK 3 S TENSOR REMARK 3 S11: -0.4661 S12: 0.9380 S13: 0.9225 REMARK 3 S21: 0.0082 S22: 0.3315 S23: -0.3321 REMARK 3 S31: 0.2128 S32: 0.6281 S33: -0.1969 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 536 THROUGH 753 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2789 -26.0972 -14.8406 REMARK 3 T TENSOR REMARK 3 T11: 0.4603 T22: 0.2917 REMARK 3 T33: 0.5654 T12: 0.0269 REMARK 3 T13: 0.0445 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 4.8743 L22: 2.0041 REMARK 3 L33: 1.5407 L12: -1.4370 REMARK 3 L13: -0.9306 L23: 0.8052 REMARK 3 S TENSOR REMARK 3 S11: 0.0350 S12: -0.2656 S13: 1.0078 REMARK 3 S21: 0.1351 S22: 0.1252 S23: -0.3460 REMARK 3 S31: -0.3268 S32: -0.0525 S33: -0.1271 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 754 THROUGH 846 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1821 -45.7542 -22.3360 REMARK 3 T TENSOR REMARK 3 T11: 0.3684 T22: 0.3338 REMARK 3 T33: 0.3143 T12: -0.0164 REMARK 3 T13: -0.0008 T23: -0.0360 REMARK 3 L TENSOR REMARK 3 L11: 3.1707 L22: 4.4719 REMARK 3 L33: 2.3858 L12: 0.0710 REMARK 3 L13: -0.8296 L23: -1.3546 REMARK 3 S TENSOR REMARK 3 S11: 0.0610 S12: 0.0915 S13: 0.0596 REMARK 3 S21: -0.1629 S22: 0.1528 S23: -0.3166 REMARK 3 S31: -0.1352 S32: -0.0908 S33: -0.2067 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 516 THROUGH 535 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.7400 -64.1395 -39.3854 REMARK 3 T TENSOR REMARK 3 T11: 0.2657 T22: 0.7620 REMARK 3 T33: 0.3649 T12: -0.0267 REMARK 3 T13: 0.0028 T23: -0.1542 REMARK 3 L TENSOR REMARK 3 L11: 1.4205 L22: 1.0846 REMARK 3 L33: 2.4033 L12: 0.2348 REMARK 3 L13: 0.0150 L23: 0.4688 REMARK 3 S TENSOR REMARK 3 S11: 0.1093 S12: 0.2559 S13: -0.1032 REMARK 3 S21: -0.0400 S22: -0.4508 S23: 0.4797 REMARK 3 S31: 0.3100 S32: -0.1854 S33: 0.0276 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 536 THROUGH 652 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8547 -57.9595 -36.7583 REMARK 3 T TENSOR REMARK 3 T11: 0.2802 T22: 0.7339 REMARK 3 T33: 0.3344 T12: -0.1375 REMARK 3 T13: 0.0258 T23: -0.0726 REMARK 3 L TENSOR REMARK 3 L11: 2.3769 L22: 2.0076 REMARK 3 L33: 1.2589 L12: 0.2967 REMARK 3 L13: 0.3658 L23: -0.2731 REMARK 3 S TENSOR REMARK 3 S11: -0.0746 S12: 0.0862 S13: 0.1008 REMARK 3 S21: -0.0704 S22: 0.0000 S23: -0.0472 REMARK 3 S31: -0.0384 S32: -0.5981 S33: 0.1040 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 653 THROUGH 735 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.0432 -54.5461 -40.7057 REMARK 3 T TENSOR REMARK 3 T11: 0.3910 T22: 1.3015 REMARK 3 T33: 0.5891 T12: -0.0191 REMARK 3 T13: -0.0296 T23: -0.1562 REMARK 3 L TENSOR REMARK 3 L11: 1.6389 L22: 1.1215 REMARK 3 L33: 0.9713 L12: 0.7954 REMARK 3 L13: -0.0342 L23: -0.0063 REMARK 3 S TENSOR REMARK 3 S11: 0.1256 S12: 0.4507 S13: 0.1278 REMARK 3 S21: -0.1351 S22: -0.2981 S23: 0.6640 REMARK 3 S31: -0.2241 S32: -1.2107 S33: 0.1702 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 736 THROUGH 757 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7314 -69.5017 -42.7757 REMARK 3 T TENSOR REMARK 3 T11: 0.4531 T22: 0.5663 REMARK 3 T33: 0.3298 T12: -0.1341 REMARK 3 T13: 0.1025 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 3.6166 L22: 1.9788 REMARK 3 L33: 1.7497 L12: 1.2496 REMARK 3 L13: 1.5575 L23: 0.3585 REMARK 3 S TENSOR REMARK 3 S11: 0.1720 S12: -0.1220 S13: -0.6854 REMARK 3 S21: -0.0824 S22: 0.0662 S23: -0.4081 REMARK 3 S31: 0.4612 S32: -0.4407 S33: 0.1355 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 758 THROUGH 845 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2406 -70.4430 -31.8495 REMARK 3 T TENSOR REMARK 3 T11: 0.4022 T22: 0.4562 REMARK 3 T33: 0.3849 T12: -0.1241 REMARK 3 T13: 0.0074 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 3.9426 L22: 2.9381 REMARK 3 L33: 2.4847 L12: -0.4907 REMARK 3 L13: -1.0532 L23: -0.1929 REMARK 3 S TENSOR REMARK 3 S11: 0.1191 S12: -0.4833 S13: -0.0927 REMARK 3 S21: 0.1564 S22: -0.1165 S23: -0.0600 REMARK 3 S31: 0.2077 S32: -0.0701 S33: -0.0344 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 3062 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4TN1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000201891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE 2.5.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21704 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4NCN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, PEG 8000, NAOAC, PH 6.7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.90000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.84500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.95000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.84500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.85000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.84500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.84500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.95000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.84500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.84500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 89.85000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.90000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER. THERE ARE 2 FRAGMENTS OF REMARK 300 THE BIOLOGICAL UNIT IN THE ASYMMETRIC UNIT (CHAINS A & B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE ACCESSION NUMBER ON NCBI FOR THE CORRESPONDING GENE IS XP_ REMARK 400 006693439 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 514 REMARK 465 HIS B 515 REMARK 465 MET B 516 REMARK 465 ASP B 847 REMARK 465 GLU B 848 REMARK 465 GLU B 849 REMARK 465 GLU B 850 REMARK 465 LEU B 851 REMARK 465 GLU B 852 REMARK 465 GLU B 853 REMARK 465 GLU B 854 REMARK 465 VAL B 855 REMARK 465 GLU B 856 REMARK 465 SER B 857 REMARK 465 ASP B 858 REMARK 465 GLY A 514 REMARK 465 HIS A 515 REMARK 465 ASP A 846 REMARK 465 ASP A 847 REMARK 465 GLU A 848 REMARK 465 GLU A 849 REMARK 465 GLU A 850 REMARK 465 LEU A 851 REMARK 465 GLU A 852 REMARK 465 GLU A 853 REMARK 465 GLU A 854 REMARK 465 VAL A 855 REMARK 465 GLU A 856 REMARK 465 SER A 857 REMARK 465 ASP A 858 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 518 CD CE NZ REMARK 470 LYS A 518 CD CE NZ REMARK 470 LYS A 704 CD CE NZ REMARK 470 ARG A 708 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 845 OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 527 CB CYS B 612 1.77 REMARK 500 O HIS B 531 OG1 THR B 534 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SG CYS B 783 SG CYS A 783 3445 1.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 601 54.99 -99.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 537 OG1 REMARK 620 2 THR B 557 OG1 87.3 REMARK 620 3 GSP B 901 O3G 175.6 88.3 REMARK 620 4 GSP B 901 O2B 95.6 157.7 88.7 REMARK 620 5 HOH B1029 O 84.9 72.3 94.6 86.0 REMARK 620 6 HOH B1030 O 81.6 96.0 98.0 106.3 162.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 537 OG1 REMARK 620 2 THR A 557 OG1 98.7 REMARK 620 3 GSP A 901 O3G 169.6 89.1 REMARK 620 4 GSP A 901 O2B 86.5 173.0 86.3 REMARK 620 5 HOH A1016 O 83.4 91.5 89.5 93.7 REMARK 620 6 HOH A1015 O 88.1 88.9 99.0 86.6 171.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSP B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TMT RELATED DB: PDB REMARK 900 RELATED ID: 4TMV RELATED DB: PDB REMARK 900 RELATED ID: 4TMW RELATED DB: PDB REMARK 900 RELATED ID: 4TMX RELATED DB: PDB REMARK 900 RELATED ID: 4TMZ RELATED DB: PDB DBREF 4TN1 A 514 858 PDB 4TN1 4TN1 514 858 DBREF 4TN1 B 514 858 PDB 4TN1 4TN1 514 858 SEQRES 1 B 345 GLY HIS MET ASN LYS ASP ASN LEU ARG SER PRO ILE CYS SEQRES 2 B 345 CYS ILE LEU GLY HIS VAL ARG THR GLY LYS THR LYS LEU SEQRES 3 B 345 LEU ASP LYS ILE ARG GLN THR ASN VAL GLN GLU GLY GLU SEQRES 4 B 345 ALA GLY GLY ILE THR GLN GLN ILE GLY ALA THR TYR PHE SEQRES 5 B 345 PRO VAL GLU ALA ILE LYS GLN LYS THR ALA VAL VAL ASN SEQRES 6 B 345 LYS ASP GLY LYS PHE GLU PHE LYS VAL PRO GLY LEU LEU SEQRES 7 B 345 ILE ILE ASP THR PRO GLY HIS GLU SER PHE SER ASN LEU SEQRES 8 B 345 ARG SER ARG GLY SER SER LEU CYS ASN ILE ALA ILE LEU SEQRES 9 B 345 VAL VAL ASP ILE MET HIS GLY LEU GLU PRO GLN THR ILE SEQRES 10 B 345 GLU SER LEU ARG LEU LEU ARG GLU ARG LYS THR PRO PHE SEQRES 11 B 345 VAL VAL ALA LEU ASN LYS ILE ASP ARG LEU TYR GLY TRP SEQRES 12 B 345 LYS LYS ILE GLU ASN ASN GLY PHE ARG GLU SER PHE ALA SEQRES 13 B 345 LEU GLN ASN LYS ALA VAL GLN ASN GLU PHE ARG ASN ARG SEQRES 14 B 345 LEU ASP GLN VAL LYS LEU GLN PHE ALA GLU GLN GLY PHE SEQRES 15 B 345 ASN SER GLU LEU PHE TYR GLU ASN LYS ASN PHE ALA ARG SEQRES 16 B 345 TYR VAL SER LEU VAL PRO THR SER ALA HIS THR GLY GLU SEQRES 17 B 345 GLY ILE PRO ASP MET LEU LYS LEU ILE VAL GLN LEU CYS SEQRES 18 B 345 GLN GLU ARG MET ALA SER SER LEU MET TYR LEU SER GLU SEQRES 19 B 345 LEU GLN ALA THR VAL LEU GLU VAL LYS ALA ILE GLU GLY SEQRES 20 B 345 PHE GLY VAL THR ILE ASP VAL ILE LEU SER ASN GLY ILE SEQRES 21 B 345 LEU ARG GLU GLY ASP ARG ILE VAL LEU CYS GLY LEU GLU SEQRES 22 B 345 GLY PRO ILE LYS THR ASN ILE ARG ALA LEU LEU THR PRO SEQRES 23 B 345 ALA PRO MET ARG GLU LEU ARG ILE LYS GLY GLN TYR ILE SEQRES 24 B 345 HIS HIS LYS GLU VAL LYS ALA ALA GLN GLY VAL LYS ILE SEQRES 25 B 345 SER ALA PRO GLY LEU GLU GLY ALA ILE ALA GLY SER ARG SEQRES 26 B 345 LEU LEU VAL VAL GLY PRO ASP ASP ASP GLU GLU GLU LEU SEQRES 27 B 345 GLU GLU GLU VAL GLU SER ASP SEQRES 1 A 345 GLY HIS MET ASN LYS ASP ASN LEU ARG SER PRO ILE CYS SEQRES 2 A 345 CYS ILE LEU GLY HIS VAL ARG THR GLY LYS THR LYS LEU SEQRES 3 A 345 LEU ASP LYS ILE ARG GLN THR ASN VAL GLN GLU GLY GLU SEQRES 4 A 345 ALA GLY GLY ILE THR GLN GLN ILE GLY ALA THR TYR PHE SEQRES 5 A 345 PRO VAL GLU ALA ILE LYS GLN LYS THR ALA VAL VAL ASN SEQRES 6 A 345 LYS ASP GLY LYS PHE GLU PHE LYS VAL PRO GLY LEU LEU SEQRES 7 A 345 ILE ILE ASP THR PRO GLY HIS GLU SER PHE SER ASN LEU SEQRES 8 A 345 ARG SER ARG GLY SER SER LEU CYS ASN ILE ALA ILE LEU SEQRES 9 A 345 VAL VAL ASP ILE MET HIS GLY LEU GLU PRO GLN THR ILE SEQRES 10 A 345 GLU SER LEU ARG LEU LEU ARG GLU ARG LYS THR PRO PHE SEQRES 11 A 345 VAL VAL ALA LEU ASN LYS ILE ASP ARG LEU TYR GLY TRP SEQRES 12 A 345 LYS LYS ILE GLU ASN ASN GLY PHE ARG GLU SER PHE ALA SEQRES 13 A 345 LEU GLN ASN LYS ALA VAL GLN ASN GLU PHE ARG ASN ARG SEQRES 14 A 345 LEU ASP GLN VAL LYS LEU GLN PHE ALA GLU GLN GLY PHE SEQRES 15 A 345 ASN SER GLU LEU PHE TYR GLU ASN LYS ASN PHE ALA ARG SEQRES 16 A 345 TYR VAL SER LEU VAL PRO THR SER ALA HIS THR GLY GLU SEQRES 17 A 345 GLY ILE PRO ASP MET LEU LYS LEU ILE VAL GLN LEU CYS SEQRES 18 A 345 GLN GLU ARG MET ALA SER SER LEU MET TYR LEU SER GLU SEQRES 19 A 345 LEU GLN ALA THR VAL LEU GLU VAL LYS ALA ILE GLU GLY SEQRES 20 A 345 PHE GLY VAL THR ILE ASP VAL ILE LEU SER ASN GLY ILE SEQRES 21 A 345 LEU ARG GLU GLY ASP ARG ILE VAL LEU CYS GLY LEU GLU SEQRES 22 A 345 GLY PRO ILE LYS THR ASN ILE ARG ALA LEU LEU THR PRO SEQRES 23 A 345 ALA PRO MET ARG GLU LEU ARG ILE LYS GLY GLN TYR ILE SEQRES 24 A 345 HIS HIS LYS GLU VAL LYS ALA ALA GLN GLY VAL LYS ILE SEQRES 25 A 345 SER ALA PRO GLY LEU GLU GLY ALA ILE ALA GLY SER ARG SEQRES 26 A 345 LEU LEU VAL VAL GLY PRO ASP ASP ASP GLU GLU GLU LEU SEQRES 27 A 345 GLU GLU GLU VAL GLU SER ASP HET GSP B 901 32 HET MG B 902 1 HET GSP A 901 32 HET MG A 902 1 HETNAM GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GSP 2(C10 H16 N5 O13 P3 S) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *48(H2 O) HELIX 1 AA1 GLY B 535 GLN B 545 1 11 HELIX 2 AA2 ASN B 547 GLU B 552 1 6 HELIX 3 AA3 ALA B 553 ILE B 556 5 4 HELIX 4 AA4 VAL B 567 THR B 574 1 8 HELIX 5 AA5 ALA B 575 ASN B 578 5 4 HELIX 6 AA6 PHE B 601 CYS B 612 1 12 HELIX 7 AA7 GLU B 626 ARG B 639 1 14 HELIX 8 AA8 LYS B 649 LEU B 653 5 5 HELIX 9 AA9 GLY B 663 GLN B 671 1 9 HELIX 10 AB1 ASN B 672 GLN B 693 1 22 HELIX 11 AB2 TYR B 701 ASN B 703 5 3 HELIX 12 AB3 GLY B 722 ARG B 737 1 16 HELIX 13 AB4 ALA B 739 TYR B 744 5 6 HELIX 14 AB5 GLY A 535 GLN A 545 1 11 HELIX 15 AB6 ASN A 547 GLU A 552 1 6 HELIX 16 AB7 ALA A 553 ILE A 556 5 4 HELIX 17 AB8 VAL A 567 THR A 574 1 8 HELIX 18 AB9 ALA A 575 ASN A 578 5 4 HELIX 19 AC1 PHE A 601 CYS A 612 1 12 HELIX 20 AC2 GLU A 626 ARG A 639 1 14 HELIX 21 AC3 LYS A 649 LEU A 653 5 5 HELIX 22 AC4 GLY A 663 GLN A 671 1 9 HELIX 23 AC5 ASN A 672 GLN A 693 1 22 HELIX 24 AC6 GLY A 722 GLU A 736 1 15 HELIX 25 AC7 ALA A 739 TYR A 744 5 6 SHEET 1 AA1 7 GLY B 561 PRO B 566 0 SHEET 2 AA1 7 GLY B 589 ASP B 594 -1 O ILE B 592 N THR B 563 SHEET 3 AA1 7 ILE B 525 GLY B 530 1 N CYS B 526 O ILE B 593 SHEET 4 AA1 7 ILE B 614 ASP B 620 1 O VAL B 618 N LEU B 529 SHEET 5 AA1 7 PHE B 643 ASN B 648 1 O ALA B 646 N VAL B 619 SHEET 6 AA1 7 VAL B 710 PRO B 714 1 O VAL B 713 N VAL B 645 SHEET 7 AA1 7 SER B 697 LEU B 699 1 N GLU B 698 O VAL B 710 SHEET 1 AA2 8 PRO B 788 ASN B 792 0 SHEET 2 AA2 8 ARG B 779 CYS B 783 -1 N LEU B 782 O ILE B 789 SHEET 3 AA2 8 ARG B 838 VAL B 842 -1 O VAL B 842 N ARG B 779 SHEET 4 AA2 8 GLN B 749 ILE B 758 -1 N ALA B 750 O LEU B 839 SHEET 5 AA2 8 GLY B 762 ASN B 771 -1 O ILE B 768 N THR B 751 SHEET 6 AA2 8 GLN B 821 SER B 826 -1 O VAL B 823 N VAL B 767 SHEET 7 AA2 8 ALA B 795 THR B 798 -1 N LEU B 797 O LYS B 824 SHEET 8 AA2 8 ILE B 812 HIS B 814 -1 O HIS B 814 N LEU B 796 SHEET 1 AA3 2 ILE B 773 ARG B 775 0 SHEET 2 AA3 2 GLU B 816 LYS B 818 -1 O VAL B 817 N LEU B 774 SHEET 1 AA4 7 GLY A 561 PRO A 566 0 SHEET 2 AA4 7 GLY A 589 ASP A 594 -1 O ILE A 592 N THR A 563 SHEET 3 AA4 7 ILE A 525 GLY A 530 1 N CYS A 526 O LEU A 591 SHEET 4 AA4 7 ILE A 614 ASP A 620 1 O ILE A 616 N CYS A 527 SHEET 5 AA4 7 PHE A 643 ASN A 648 1 O ALA A 646 N VAL A 619 SHEET 6 AA4 7 VAL A 710 PRO A 714 1 O VAL A 713 N VAL A 645 SHEET 7 AA4 7 SER A 697 LEU A 699 1 N GLU A 698 O VAL A 710 SHEET 1 AA5 8 PRO A 788 ASN A 792 0 SHEET 2 AA5 8 ARG A 779 CYS A 783 -1 N LEU A 782 O ILE A 789 SHEET 3 AA5 8 ARG A 838 VAL A 841 -1 O LEU A 840 N VAL A 781 SHEET 4 AA5 8 GLN A 749 ALA A 757 -1 N ALA A 750 O LEU A 839 SHEET 5 AA5 8 VAL A 763 ASN A 771 -1 O ILE A 768 N THR A 751 SHEET 6 AA5 8 GLN A 821 SER A 826 -1 O VAL A 823 N VAL A 767 SHEET 7 AA5 8 ALA A 795 PRO A 799 -1 N LEU A 797 O LYS A 824 SHEET 8 AA5 8 TYR A 811 HIS A 813 -1 O ILE A 812 N THR A 798 SHEET 1 AA6 2 ILE A 773 ARG A 775 0 SHEET 2 AA6 2 GLU A 816 LYS A 818 -1 O VAL A 817 N LEU A 774 SSBOND 1 CYS B 527 CYS B 612 1555 1555 2.24 LINK OG1 THR B 537 MG MG B 902 1555 1555 1.94 LINK OG1 THR B 557 MG MG B 902 1555 1555 2.34 LINK OG1 THR A 537 MG MG A 902 1555 1555 1.92 LINK OG1 THR A 557 MG MG A 902 1555 1555 2.05 LINK O3G GSP B 901 MG MG B 902 1555 1555 1.91 LINK O2B GSP B 901 MG MG B 902 1555 1555 1.88 LINK MG MG B 902 O HOH B1029 1555 1555 2.18 LINK MG MG B 902 O HOH B1030 1555 1555 1.99 LINK O3G GSP A 901 MG MG A 902 1555 1555 1.89 LINK O2B GSP A 901 MG MG A 902 1555 1555 2.17 LINK MG MG A 902 O HOH A1016 1555 1555 2.18 LINK MG MG A 902 O HOH A1015 1555 1555 2.05 CISPEP 1 ALA B 819 ALA B 820 0 0.50 CISPEP 2 ALA A 819 ALA A 820 0 1.48 SITE 1 AC1 20 VAL B 532 ARG B 533 THR B 534 GLY B 535 SITE 2 AC1 20 LYS B 536 THR B 537 LYS B 538 GLN B 549 SITE 3 AC1 20 THR B 557 GLY B 597 ASN B 648 LYS B 649 SITE 4 AC1 20 ASP B 651 ARG B 652 SER B 716 ALA B 717 SITE 5 AC1 20 HIS B 718 MG B 902 HOH B1029 HOH B1030 SITE 1 AC2 5 THR B 537 THR B 557 GSP B 901 HOH B1029 SITE 2 AC2 5 HOH B1030 SITE 1 AC3 20 VAL A 532 ARG A 533 THR A 534 GLY A 535 SITE 2 AC3 20 LYS A 536 THR A 537 LYS A 538 GLN A 549 SITE 3 AC3 20 THR A 557 GLY A 597 ASN A 648 LYS A 649 SITE 4 AC3 20 ASP A 651 ARG A 652 SER A 716 ALA A 717 SITE 5 AC3 20 HIS A 718 MG A 902 HOH A1015 HOH A1016 SITE 1 AC4 5 THR A 537 THR A 557 GSP A 901 HOH A1015 SITE 2 AC4 5 HOH A1016 CRYST1 115.690 115.690 119.800 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008644 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008644 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008347 0.00000 MASTER 499 0 4 25 34 0 14 6 0 0 0 54 END