HEADER OXIDOREDUCTASE 27-MAY-14 4TKL TITLE CRYSTAL STRUCTURE OF NADH-DEPENDENT REDUCTASE A1-R' RESPONSIBLE FOR TITLE 2 ALGINATE METABOLISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADH-DEPENDENT REDUCTASE FOR 4-DEOXY-L-ERYTHRO-5- COMPND 3 HEXOSEULOSE URONATE; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS SP. A1; SOURCE 3 ORGANISM_TAXID: 90322; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ALPHA/BETA/ALPHA, ROSSMANN-FOLD, ALGINATE METABOLISM, SHORT-CHAIN KEYWDS 2 DEHYDROGENASE/REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.TAKASE,B.MIKAMI,S.KAWAI,K.MURATA,W.HASHIMOTO REVDAT 3 22-JAN-20 4TKL 1 SOURCE JRNL REMARK REVDAT 2 10-DEC-14 4TKL 1 JRNL REVDAT 1 25-JUN-14 4TKL 0 JRNL AUTH R.TAKASE,B.MIKAMI,S.KAWAI,K.MURATA,W.HASHIMOTO JRNL TITL STRUCTURE-BASED CONVERSION OF THE COENZYME REQUIREMENT OF A JRNL TITL 2 SHORT-CHAIN DEHYDROGENASE/REDUCTASE INVOLVED IN BACTERIAL JRNL TITL 3 ALGINATE METABOLISM. JRNL REF J.BIOL.CHEM. V. 289 33198 2014 JRNL REFN ESSN 1083-351X JRNL PMID 25288804 JRNL DOI 10.1074/JBC.M114.585661 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 55375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2949 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3971 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 217 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3607 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.49000 REMARK 3 B22 (A**2) : 0.49000 REMARK 3 B33 (A**2) : -1.60000 REMARK 3 B12 (A**2) : 0.49000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.910 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3682 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3544 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4977 ; 1.157 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8104 ; 0.712 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 5.414 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;38.011 ;23.026 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 586 ;10.389 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;14.960 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 561 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4237 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 864 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1940 ; 0.823 ; 2.356 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1939 ; 0.823 ; 2.356 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2418 ; 1.454 ; 3.526 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2419 ; 1.454 ; 3.526 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1742 ; 0.963 ; 2.512 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1731 ; 0.959 ; 2.491 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2541 ; 1.635 ; 3.679 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4365 ; 4.106 ;19.310 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4229 ; 3.720 ;18.935 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4TKL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000200428. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58400 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 47.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 0.38400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3AFM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, SODIUM/POTASSIUM PHOSPHATE, REMARK 280 SODIUM CHLORIDE, PH 6.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.53267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.06533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 93.06533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.53267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -46.53267 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 426 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 455 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 461 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 199 REMARK 465 ALA A 200 REMARK 465 PHE A 201 REMARK 465 HIS A 202 REMARK 465 ALA A 203 REMARK 465 ASP A 204 REMARK 465 LYS A 205 REMARK 465 SER A 206 REMARK 465 ASP A 207 REMARK 465 GLU A 208 REMARK 465 LEU A 209 REMARK 465 MET B 1 REMARK 465 VAL B 197 REMARK 465 ASP B 198 REMARK 465 THR B 199 REMARK 465 ALA B 200 REMARK 465 PHE B 201 REMARK 465 HIS B 202 REMARK 465 ALA B 203 REMARK 465 ASP B 204 REMARK 465 LYS B 205 REMARK 465 SER B 206 REMARK 465 ASP B 207 REMARK 465 GLU B 208 REMARK 465 LEU B 209 REMARK 465 LYS B 210 REMARK 465 THR B 211 REMARK 465 ARG B 212 REMARK 465 ILE B 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO B 258 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 431 O HOH B 431 5554 0.97 REMARK 500 O HOH A 460 O HOH A 460 5554 1.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 -7.13 71.92 REMARK 500 THR A 141 -125.52 -119.66 REMARK 500 ASN A 252 16.46 -153.08 REMARK 500 THR B 141 -122.67 -120.20 REMARK 500 SER B 150 148.61 -170.02 REMARK 500 ASN B 252 18.82 -154.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 543 DISTANCE = 5.86 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KTM RELATED DB: PDB DBREF 4TKL A 1 258 PDB 4TKL 4TKL 1 258 DBREF 4TKL B 1 258 PDB 4TKL 4TKL 1 258 SEQRES 1 A 258 MET PHE SER ASP LEU LYS GLY LYS ARG ILE LEU ILE THR SEQRES 2 A 258 GLY SER THR GLU GLY ILE GLY MET ALA THR ALA ILE GLU SEQRES 3 A 258 LEU ALA ARG TYR GLY ALA VAL VAL GLY LEU ASN SER HIS SEQRES 4 A 258 VAL ASP PRO ALA ASP PRO ALA LEU LEU LEU GLY LYS LEU SEQRES 5 A 258 ARG GLU ALA GLY GLY ASP GLY ALA PHE PHE ARG ALA ASP SEQRES 6 A 258 ILE THR LYS THR ALA GLU CYS GLN ARG LEU VAL SER ALA SEQRES 7 A 258 PHE VAL GLU ARG PHE ASP GLY ILE ASP VAL LEU ILE ASN SEQRES 8 A 258 ASN ALA GLY GLY LEU ALA GLY ARG SER ASN LEU GLU ASN SEQRES 9 A 258 ILE ASP ASP ALA PHE TYR ASP ARG VAL MET ASP LEU ASN SEQRES 10 A 258 GLY ARG SER VAL LEU MET MET THR LYS PHE ALA ILE PRO SEQRES 11 A 258 HIS LEU ARG ALA SER ALA LYS ALA SER GLY THR THR SER SEQRES 12 A 258 ALA VAL ILE SER THR GLY SER ILE ALA ALA ARG GLU GLY SEQRES 13 A 258 GLY GLY ILE GLY ALA GLY VAL TYR ALA ALA SER LYS ALA SEQRES 14 A 258 TRP LEU HIS ASP ILE HIS ARG ASN TRP VAL LYS GLU PHE SEQRES 15 A 258 THR LYS ASP SER ILE ARG PHE ASN ILE VAL ALA PRO GLY SEQRES 16 A 258 THR VAL ASP THR ALA PHE HIS ALA ASP LYS SER ASP GLU SEQRES 17 A 258 LEU LYS THR ARG ILE ALA ASN SER ILE PRO MET GLY ARG SEQRES 18 A 258 PHE GLY THR VAL GLN GLU LEU ALA PRO ALA TYR VAL PHE SEQRES 19 A 258 PHE ALA SER HIS ALA ALA SER GLY TYR ILE THR GLY GLN SEQRES 20 A 258 ILE LEU ASP VAL ASN GLY GLY GLN ILE CYS PRO SEQRES 1 B 258 MET PHE SER ASP LEU LYS GLY LYS ARG ILE LEU ILE THR SEQRES 2 B 258 GLY SER THR GLU GLY ILE GLY MET ALA THR ALA ILE GLU SEQRES 3 B 258 LEU ALA ARG TYR GLY ALA VAL VAL GLY LEU ASN SER HIS SEQRES 4 B 258 VAL ASP PRO ALA ASP PRO ALA LEU LEU LEU GLY LYS LEU SEQRES 5 B 258 ARG GLU ALA GLY GLY ASP GLY ALA PHE PHE ARG ALA ASP SEQRES 6 B 258 ILE THR LYS THR ALA GLU CYS GLN ARG LEU VAL SER ALA SEQRES 7 B 258 PHE VAL GLU ARG PHE ASP GLY ILE ASP VAL LEU ILE ASN SEQRES 8 B 258 ASN ALA GLY GLY LEU ALA GLY ARG SER ASN LEU GLU ASN SEQRES 9 B 258 ILE ASP ASP ALA PHE TYR ASP ARG VAL MET ASP LEU ASN SEQRES 10 B 258 GLY ARG SER VAL LEU MET MET THR LYS PHE ALA ILE PRO SEQRES 11 B 258 HIS LEU ARG ALA SER ALA LYS ALA SER GLY THR THR SER SEQRES 12 B 258 ALA VAL ILE SER THR GLY SER ILE ALA ALA ARG GLU GLY SEQRES 13 B 258 GLY GLY ILE GLY ALA GLY VAL TYR ALA ALA SER LYS ALA SEQRES 14 B 258 TRP LEU HIS ASP ILE HIS ARG ASN TRP VAL LYS GLU PHE SEQRES 15 B 258 THR LYS ASP SER ILE ARG PHE ASN ILE VAL ALA PRO GLY SEQRES 16 B 258 THR VAL ASP THR ALA PHE HIS ALA ASP LYS SER ASP GLU SEQRES 17 B 258 LEU LYS THR ARG ILE ALA ASN SER ILE PRO MET GLY ARG SEQRES 18 B 258 PHE GLY THR VAL GLN GLU LEU ALA PRO ALA TYR VAL PHE SEQRES 19 B 258 PHE ALA SER HIS ALA ALA SER GLY TYR ILE THR GLY GLN SEQRES 20 B 258 ILE LEU ASP VAL ASN GLY GLY GLN ILE CYS PRO HET PO4 A 301 5 HET PO4 B 301 5 HET PO4 B 302 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 HOH *294(H2 O) HELIX 1 AA1 PHE A 2 LYS A 6 5 5 HELIX 2 AA2 GLU A 17 ARG A 29 1 13 HELIX 3 AA3 ASP A 44 GLY A 56 1 13 HELIX 4 AA4 LYS A 68 ASP A 84 1 17 HELIX 5 AA5 ASN A 101 ILE A 105 5 5 HELIX 6 AA6 ASP A 106 GLY A 118 1 13 HELIX 7 AA7 GLY A 118 GLY A 140 1 23 HELIX 8 AA8 ILE A 151 GLY A 156 1 6 HELIX 9 AA9 ALA A 161 THR A 183 1 23 HELIX 10 AB1 THR A 211 SER A 216 1 6 HELIX 11 AB2 THR A 224 SER A 237 1 14 HELIX 12 AB3 SER A 237 GLY A 242 1 6 HELIX 13 AB4 PHE B 2 LYS B 6 5 5 HELIX 14 AB5 GLU B 17 ARG B 29 1 13 HELIX 15 AB6 ASP B 44 GLY B 56 1 13 HELIX 16 AB7 LYS B 68 ASP B 84 1 17 HELIX 17 AB8 ASN B 101 ILE B 105 5 5 HELIX 18 AB9 ASP B 106 GLY B 118 1 13 HELIX 19 AC1 GLY B 118 GLY B 140 1 23 HELIX 20 AC2 ILE B 151 GLY B 156 1 6 HELIX 21 AC3 ALA B 161 THR B 183 1 23 HELIX 22 AC4 THR B 224 SER B 237 1 14 HELIX 23 AC5 SER B 237 GLY B 242 1 6 SHEET 1 AA1 7 ASP A 58 ARG A 63 0 SHEET 2 AA1 7 VAL A 33 SER A 38 1 N LEU A 36 O ALA A 60 SHEET 3 AA1 7 ARG A 9 ILE A 12 1 N ILE A 10 O GLY A 35 SHEET 4 AA1 7 VAL A 88 ASN A 91 1 O ILE A 90 N LEU A 11 SHEET 5 AA1 7 SER A 143 THR A 148 1 O THR A 148 N ASN A 91 SHEET 6 AA1 7 ILE A 187 PRO A 194 1 O ARG A 188 N VAL A 145 SHEET 7 AA1 7 GLN A 247 VAL A 251 1 O LEU A 249 N ILE A 191 SHEET 1 AA2 7 ASP B 58 ARG B 63 0 SHEET 2 AA2 7 VAL B 33 SER B 38 1 N LEU B 36 O ALA B 60 SHEET 3 AA2 7 ARG B 9 ILE B 12 1 N ILE B 10 O VAL B 33 SHEET 4 AA2 7 VAL B 88 ASN B 91 1 O ILE B 90 N LEU B 11 SHEET 5 AA2 7 SER B 143 THR B 148 1 O THR B 148 N ASN B 91 SHEET 6 AA2 7 ILE B 187 PRO B 194 1 O ARG B 188 N SER B 143 SHEET 7 AA2 7 GLN B 247 VAL B 251 1 O LEU B 249 N ILE B 191 SITE 1 AC1 7 GLY A 14 THR A 16 SER A 38 HIS A 39 SITE 2 AC1 7 HOH A 521 HOH A 537 HOH A 539 SITE 1 AC2 5 GLY B 14 SER B 38 HIS B 39 HOH B 481 SITE 2 AC2 5 HOH B 537 SITE 1 AC3 4 ILE B 19 HOH B 469 HOH B 488 HOH B 502 CRYST1 87.717 87.717 139.598 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011400 0.006582 0.000000 0.00000 SCALE2 0.000000 0.013164 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007163 0.00000 MASTER 377 0 3 23 14 0 5 6 0 0 0 40 END