HEADER HYDROLASE 04-FEB-15 4S3K TITLE CRYSTAL STRUCTURE OF THE BACILLUS MEGATERIUM QM B1551 SPORE CORTEX- TITLE 2 LYTIC ENZYME SLEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPORE GERMINATION PROTEIN YAAH; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-433; COMPND 5 EC: 3.2.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 545693; SOURCE 4 STRAIN: ATCC 12872 / QMB1551; SOURCE 5 GENE: 8984459 (BMQ_0021), BMQ_0021, YAAH; SOURCE 6 EXPRESSION_SYSTEM: LACTOCOCCUS LACTIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1358; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNZ KEYWDS TIM BARREL, N-ACETYLGLUCOSAMINIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.CHRISTIE,D.Y.CHIRGADZE,F.I.USTOK REVDAT 2 23-SEP-15 4S3K 1 JRNL REMARK REVDAT 1 19-AUG-15 4S3K 0 JRNL AUTH F.I.USTOK,D.Y.CHIRGADZE,G.CHRISTIE JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF SLEL, A PEPTIDOGLYCAN JRNL TITL 2 LYSIN INVOLVED IN GERMINATION OF BACILLUS SPORES. JRNL REF PROTEINS V. 83 1787 2015 JRNL REFN ISSN 0887-3585 JRNL PMID 26190134 JRNL DOI 10.1002/PROT.24861 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.450 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 50990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2593 - 4.0960 0.98 3682 150 0.1572 0.1798 REMARK 3 2 4.0960 - 3.2516 0.99 3564 146 0.1527 0.1635 REMARK 3 3 3.2516 - 2.8407 0.99 3534 144 0.1567 0.1556 REMARK 3 4 2.8407 - 2.5810 0.99 3517 144 0.1626 0.1715 REMARK 3 5 2.5810 - 2.3961 0.99 3509 143 0.1581 0.1762 REMARK 3 6 2.3961 - 2.2548 0.99 3499 143 0.1535 0.1836 REMARK 3 7 2.2548 - 2.1419 0.99 3501 143 0.1529 0.1982 REMARK 3 8 2.1419 - 2.0486 0.99 3452 140 0.1612 0.1884 REMARK 3 9 2.0486 - 1.9698 0.99 3470 142 0.1705 0.1766 REMARK 3 10 1.9698 - 1.9018 0.99 3466 142 0.1818 0.1869 REMARK 3 11 1.9018 - 1.8423 0.99 3454 141 0.2072 0.2440 REMARK 3 12 1.8423 - 1.7897 0.99 3463 141 0.2257 0.2528 REMARK 3 13 1.7897 - 1.7426 0.99 3477 142 0.2482 0.2748 REMARK 3 14 1.7426 - 1.7000 0.98 3402 139 0.2627 0.2700 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3485 REMARK 3 ANGLE : 0.864 4721 REMARK 3 CHIRALITY : 0.036 511 REMARK 3 PLANARITY : 0.005 615 REMARK 3 DIHEDRAL : 12.466 1311 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -2:48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.3001 29.0296 84.7644 REMARK 3 T TENSOR REMARK 3 T11: 0.1453 T22: 0.1368 REMARK 3 T33: 0.1392 T12: -0.0150 REMARK 3 T13: -0.0256 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.2378 L22: 0.0776 REMARK 3 L33: 0.1709 L12: 0.0094 REMARK 3 L13: -0.0520 L23: -0.0477 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: 0.0099 S13: -0.0141 REMARK 3 S21: 0.0688 S22: -0.0303 S23: -0.0429 REMARK 3 S31: -0.0665 S32: 0.0845 S33: -0.0151 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 49:98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.4526 48.9621 91.2799 REMARK 3 T TENSOR REMARK 3 T11: 0.4657 T22: 0.3845 REMARK 3 T33: 0.2995 T12: -0.0138 REMARK 3 T13: -0.1655 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.3499 L22: 0.2177 REMARK 3 L33: 0.4410 L12: 0.0193 REMARK 3 L13: -0.0324 L23: -0.2839 REMARK 3 S TENSOR REMARK 3 S11: -0.5731 S12: 0.3665 S13: 0.3907 REMARK 3 S21: -0.3970 S22: 0.0315 S23: 0.1620 REMARK 3 S31: -0.0444 S32: 0.4962 S33: -0.3864 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 99:323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1228 29.9393 68.9989 REMARK 3 T TENSOR REMARK 3 T11: 0.1230 T22: 0.1309 REMARK 3 T33: 0.0966 T12: 0.0042 REMARK 3 T13: -0.0041 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.9987 L22: 0.7706 REMARK 3 L33: 0.4593 L12: 0.0961 REMARK 3 L13: -0.2023 L23: -0.2210 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: 0.1140 S13: 0.0205 REMARK 3 S21: -0.0581 S22: 0.0294 S23: 0.0549 REMARK 3 S31: 0.0230 S32: -0.0477 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 324:384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.4119 18.9693 65.4839 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.1304 REMARK 3 T33: 0.1459 T12: -0.0219 REMARK 3 T13: 0.0114 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 0.3823 L22: 0.4688 REMARK 3 L33: 0.7575 L12: -0.0234 REMARK 3 L13: -0.1761 L23: 0.0712 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: 0.1441 S13: -0.0581 REMARK 3 S21: -0.0962 S22: 0.0018 S23: -0.1082 REMARK 3 S31: 0.0223 S32: -0.0747 S33: 0.0201 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 385:430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4571 34.8558 77.3315 REMARK 3 T TENSOR REMARK 3 T11: 0.1303 T22: 0.1131 REMARK 3 T33: 0.1406 T12: -0.0016 REMARK 3 T13: -0.0026 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.2832 L22: 0.0675 REMARK 3 L33: 0.1567 L12: -0.0254 REMARK 3 L13: 0.0895 L23: 0.0145 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: 0.0088 S13: -0.0035 REMARK 3 S21: 0.0658 S22: 0.0202 S23: -0.0341 REMARK 3 S31: -0.0515 S32: 0.0110 S33: -0.0043 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4S3K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-15. REMARK 100 THE RCSB ID CODE IS RCSB088135. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51055 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 43.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.72500 REMARK 200 R SYM FOR SHELL (I) : 0.72500 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM SULFATE, 20% (W/V) PEG 3, REMARK 280 350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.71950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.16400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.24800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.16400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.71950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.24800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TRP A 285 REMARK 465 GLY A 286 REMARK 465 TYR A 287 REMARK 465 SER A 288 REMARK 465 THR A 431 REMARK 465 GLN A 432 REMARK 465 PRO A 433 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 TRP A 262 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 262 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 154 H ASN A 155 1.55 REMARK 500 O HOH A 613 O HOH A 1037 1.99 REMARK 500 O HOH A 1032 O HOH A 1033 2.13 REMARK 500 O HOH A 947 O HOH A 1029 2.15 REMARK 500 OD1 ASN A 114 O HOH A 1031 2.16 REMARK 500 O HOH A 622 O HOH A 1037 2.18 REMARK 500 O HOH A 778 O HOH A 894 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 608 O HOH A 726 4557 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 86 152.01 -49.25 REMARK 500 ASN A 154 -123.87 37.02 REMARK 500 ASP A 216 69.77 -111.81 REMARK 500 PHE A 383 -150.88 -145.91 REMARK 500 PHE A 413 74.83 -153.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4S3J RELATED DB: PDB REMARK 900 RELATED ID: 4F55 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE BACILLUS REMARK 900 CEREUS SLEB PROTEIN REMARK 900 RELATED ID: 4FET RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF GERMINATION-SPECIFIC LYTIC REMARK 900 TRANSGLYCOSYLASE SLEB FROM BACILLUS ANTHRACIS REMARK 900 RELATED ID: 3CZ8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PUTATIVE SPORULATION-SPECIFIC REMARK 900 GLYCOSYLASE YDHD FROM BACILLUS SUBTILIS DBREF 4S3K A 2 433 UNP D5DUS2 D5DUS2_BACMQ 2 433 SEQADV 4S3K GLY A -2 UNP D5DUS2 EXPRESSION TAG SEQADV 4S3K GLY A -1 UNP D5DUS2 EXPRESSION TAG SEQADV 4S3K PHE A 0 UNP D5DUS2 EXPRESSION TAG SEQADV 4S3K ALA A 1 UNP D5DUS2 EXPRESSION TAG SEQRES 1 A 436 GLY GLY PHE ALA GLN ILE TYR THR VAL LYS ALA GLY ASP SEQRES 2 A 436 SER ILE TYR SER ILE ALA LYS GLN PHE ARG ILE ASP ALA SEQRES 3 A 436 GLY LYS ILE ILE ARG ALA ASN GLU LEU PRO ASN PRO ASN SEQRES 4 A 436 GLN LEU VAL ILE GLY GLN SER MET VAL ILE PRO ILE ASN SEQRES 5 A 436 GLY THR TYR TYR THR VAL LYS ALA GLY ASP THR ILE TRP SEQRES 6 A 436 LYS VAL GLY ARG LYS LEU GLY VAL SER TYR GLN ALA ILE SEQRES 7 A 436 ALA ASN ALA ASN ASN VAL SER VAL THR ALA PRO LEU THR SEQRES 8 A 436 PRO GLY ARG ARG ILE LEU ILE PRO PRO SER PRO ASN LYS SEQRES 9 A 436 ARG ASN GLY GLU PHE LEU GLY TYR VAL GLU THR SER ASN SEQRES 10 A 436 ARG LYS ILE THR PRO GLN THR GLU LYS MET ILE ASN GLN SEQRES 11 A 436 ASN ALA LYS TYR LEU THR TYR LEU GLY PRO ALA ASN PHE SEQRES 12 A 436 GLU VAL GLN LYS ASP GLY SER LEU LYS ALA PRO PRO LEU SEQRES 13 A 436 ASN ASN LEU GLY SER ILE ALA LYS GLU ASN ASP VAL ILE SEQRES 14 A 436 PHE LEU MET VAL LEU ALA ASN ILE GLU ASN GLY ALA PHE SEQRES 15 A 436 SER ASP GLU VAL GLY ARG ALA ILE LEU ASN ASN LYS ASP SEQRES 16 A 436 VAL GLN ASP THR LEU LEU ASN ASN ILE VAL LYS THR ALA SEQRES 17 A 436 LYS GLU GLN ASN PHE ARG ASP ILE HIS PHE ASP PHE GLU SEQRES 18 A 436 PHE LEU ARG PRO ALA ASP LYS GLU ALA TYR ILE ALA PHE SEQRES 19 A 436 LEU GLN LYS ALA LYS LYS ARG LEU GLN ASP GLU GLN LEU SEQRES 20 A 436 LEU MET SER VAL ALA LEU ALA PRO LYS THR SER ARG ASP SEQRES 21 A 436 GLN LYS GLY LYS TRP TYR GLU ALA HIS ASP TYR LYS ALA SEQRES 22 A 436 ILE GLY GLU ILE ALA ASN PHE VAL VAL PRO MET THR TYR SEQRES 23 A 436 GLU TRP GLY TYR SER GLY GLY PRO PRO MET ALA VAL SER SEQRES 24 A 436 PRO ILE GLY PRO VAL ARG ASP VAL LEU GLU TYR ALA VAL SEQRES 25 A 436 SER GLU ILE PRO SER SER LYS ILE ILE MET GLY GLN ASN SEQRES 26 A 436 LEU TYR GLY TYR ASP TRP THR LEU PRO TYR LYS PRO GLY SEQRES 27 A 436 GLY GLU TYR ALA LYS ALA ILE SER PRO GLN ARG ALA ILE SEQRES 28 A 436 GLU LEU ALA ALA ARG TYR LYS VAL ALA ILE GLN TYR ASP SEQRES 29 A 436 ASN LYS ALA GLN ALA PRO PHE PHE ARG TYR LYS ASP GLU SEQRES 30 A 436 GLN GLN ARG THR HIS GLU VAL TRP PHE GLU ASP ALA ARG SEQRES 31 A 436 SER ILE GLN ALA LYS PHE ASP LEU ILE LYS GLU LEU LYS SEQRES 32 A 436 LEU ARG GLY MET ALA TYR TRP LYS LEU GLY LEU ASP PHE SEQRES 33 A 436 PRO GLN ASN TRP LEU LEU ILE GLU ASP ASN PHE LYS ILE SEQRES 34 A 436 THR LYS ARG VAL THR GLN PRO HET SO4 A 501 5 HET SO4 A 502 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *441(H2 O) HELIX 1 1 SER A 11 ARG A 20 1 10 HELIX 2 2 ASP A 22 ASN A 30 1 9 HELIX 3 3 THR A 60 LEU A 68 1 9 HELIX 4 4 SER A 71 ASN A 79 1 9 HELIX 5 5 THR A 118 ALA A 129 1 12 HELIX 6 6 LYS A 130 LEU A 132 5 3 HELIX 7 7 ASN A 155 ASN A 163 1 9 HELIX 8 8 SER A 180 ASN A 189 1 10 HELIX 9 9 ASN A 190 ASN A 209 1 20 HELIX 10 10 ARG A 221 ALA A 223 5 3 HELIX 11 11 ASP A 224 GLU A 242 1 19 HELIX 12 12 ASP A 267 ALA A 275 1 9 HELIX 13 13 PRO A 297 ILE A 312 1 16 HELIX 14 14 PRO A 313 LYS A 316 5 4 HELIX 15 15 SER A 343 TYR A 354 1 12 HELIX 16 16 ASP A 385 LEU A 399 1 15 HELIX 17 17 PHE A 413 ASN A 423 1 11 SHEET 1 A 2 GLN A 2 THR A 5 0 SHEET 2 A 2 SER A 43 ILE A 46 -1 O MET A 44 N TYR A 4 SHEET 1 B 2 THR A 51 THR A 54 0 SHEET 2 B 2 ARG A 92 ILE A 95 -1 O ILE A 95 N THR A 51 SHEET 1 C 7 LEU A 148 LYS A 149 0 SHEET 2 C 7 PHE A 140 VAL A 142 -1 N GLU A 141 O LYS A 149 SHEET 3 C 7 ILE A 166 ALA A 172 1 O VAL A 170 N PHE A 140 SHEET 4 C 7 TYR A 134 ALA A 138 1 N LEU A 135 O LEU A 168 SHEET 5 C 7 ARG A 102 GLU A 111 1 N VAL A 110 O ALA A 138 SHEET 6 C 7 GLY A 403 TRP A 407 1 O TYR A 406 N LEU A 107 SHEET 7 C 7 ILE A 318 ASN A 322 1 N MET A 319 O ALA A 405 SHEET 1 D 7 PHE A 277 PRO A 280 0 SHEET 2 D 7 LEU A 245 LEU A 250 1 N LEU A 250 O VAL A 279 SHEET 3 D 7 PHE A 210 ASP A 216 1 N PHE A 215 O SER A 247 SHEET 4 D 7 ILE A 166 ALA A 172 1 N LEU A 171 O ASP A 216 SHEET 5 D 7 TYR A 134 ALA A 138 1 N LEU A 135 O LEU A 168 SHEET 6 D 7 ARG A 102 GLU A 111 1 N VAL A 110 O ALA A 138 SHEET 7 D 7 PHE A 424 ILE A 426 1 O LYS A 425 N GLY A 104 SHEET 1 E 2 ILE A 174 GLU A 175 0 SHEET 2 E 2 ALA A 178 PHE A 179 -1 O ALA A 178 N GLU A 175 SHEET 1 F 5 LYS A 340 ILE A 342 0 SHEET 2 F 5 GLY A 325 THR A 329 -1 N GLY A 325 O ILE A 342 SHEET 3 F 5 THR A 378 TRP A 382 -1 O GLU A 380 N TRP A 328 SHEET 4 F 5 ALA A 366 LYS A 372 -1 N PHE A 369 O VAL A 381 SHEET 5 F 5 GLN A 359 ASP A 361 -1 N GLN A 359 O PHE A 368 CISPEP 1 ALA A 138 ASN A 139 0 -2.85 CISPEP 2 LEU A 330 PRO A 331 0 -1.35 CISPEP 3 TRP A 407 LYS A 408 0 1.82 SITE 1 AC1 6 ASN A 276 ARG A 377 ARG A 402 ARG A 429 SITE 2 AC1 6 HOH A 645 HOH A 727 SITE 1 AC2 3 ARG A 92 HOH A 700 HOH A 712 CRYST1 63.439 80.496 90.328 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015763 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011071 0.00000 MASTER 380 0 2 17 25 0 3 6 0 0 0 34 END