HEADER HYDROLASE/ANTIBIOTIC 20-JAN-15 4S2K TITLE OXA-48 IN COMPLEX WITH AVIBACTAM AT PH 7.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLA OXA-48, BLAOXA-48, FP68_27275, KPE71T_00045; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, BETA-LACTAMASE, HYDROLASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.T.KING,N.C.J.STRYNADKA REVDAT 4 25-OCT-17 4S2K 1 REMARK REVDAT 3 28-SEP-16 4S2K 1 JRNL REVDAT 2 03-JUN-15 4S2K 1 HETSYN REVDAT 1 25-FEB-15 4S2K 0 JRNL AUTH D.T.KING,A.M.KING,S.M.LAL,G.D.WRIGHT,N.C.STRYNADKA JRNL TITL MOLECULAR MECHANISM OF AVIBACTAM-MEDIATED BETA-LACTAMASE JRNL TITL 2 INHIBITION. JRNL REF ACS INFECT DIS V. 1 175 2015 JRNL REFN ESSN 2373-8227 JRNL PMID 27622530 JRNL DOI 10.1021/ACSINFECDIS.5B00007 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 69632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3518 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.15 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5140 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1917 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4917 REMARK 3 BIN R VALUE (WORKING SET) : 0.1894 REMARK 3 BIN FREE R VALUE : 0.2435 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.34 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 223 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7962 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 537 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.93720 REMARK 3 B22 (A**2) : 4.93720 REMARK 3 B33 (A**2) : -9.87440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.253 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.180 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8246 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 11161 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2911 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 240 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1167 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 8246 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1040 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 10708 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.02 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.53 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 50.7175 -40.1773 15.2900 REMARK 3 T TENSOR REMARK 3 T11: -0.0828 T22: -0.0465 REMARK 3 T33: 0.0592 T12: 0.0018 REMARK 3 T13: -0.0106 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 1.1366 L22: 1.0245 REMARK 3 L33: 0.3883 L12: -0.0583 REMARK 3 L13: -0.1441 L23: -0.0321 REMARK 3 S TENSOR REMARK 3 S11: -0.0452 S12: 0.0567 S13: -0.1285 REMARK 3 S21: -0.0120 S22: -0.0158 S23: -0.1882 REMARK 3 S31: 0.0059 S32: 0.0237 S33: 0.0610 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 42.8700 -3.5131 36.0856 REMARK 3 T TENSOR REMARK 3 T11: -0.0547 T22: -0.0617 REMARK 3 T33: 0.0028 T12: -0.0276 REMARK 3 T13: 0.0219 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.6740 L22: 1.4416 REMARK 3 L33: 0.6352 L12: 0.0957 REMARK 3 L13: -0.0098 L23: 0.4737 REMARK 3 S TENSOR REMARK 3 S11: 0.0700 S12: -0.0926 S13: -0.0630 REMARK 3 S21: 0.1421 S22: -0.0357 S23: 0.0973 REMARK 3 S31: 0.0600 S32: -0.0548 S33: -0.0343 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 18.4035 -38.7660 18.6048 REMARK 3 T TENSOR REMARK 3 T11: -0.0845 T22: -0.0277 REMARK 3 T33: 0.0051 T12: 0.0124 REMARK 3 T13: -0.0090 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 1.2121 L22: 0.7681 REMARK 3 L33: 0.6194 L12: 0.2542 REMARK 3 L13: 0.3548 L23: 0.2377 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: -0.1747 S13: 0.0721 REMARK 3 S21: 0.0528 S22: 0.0232 S23: 0.0993 REMARK 3 S31: -0.0158 S32: -0.0839 S33: -0.0326 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 60.1494 23.8294 32.7842 REMARK 3 T TENSOR REMARK 3 T11: -0.0616 T22: -0.0756 REMARK 3 T33: 0.0500 T12: -0.0159 REMARK 3 T13: 0.0483 T23: -0.0420 REMARK 3 L TENSOR REMARK 3 L11: 1.3005 L22: 1.0887 REMARK 3 L33: 0.4698 L12: 0.1142 REMARK 3 L13: -0.0381 L23: -0.1965 REMARK 3 S TENSOR REMARK 3 S11: -0.0379 S12: 0.0234 S13: 0.0854 REMARK 3 S21: -0.0563 S22: -0.0238 S23: -0.2162 REMARK 3 S31: -0.0234 S32: 0.0345 S33: 0.0617 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4S2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000088099. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 (DCM) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69650 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 52.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3HBR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM TRIS PH 7.5, 0.1M AMMONIUM REMARK 280 CHLORIDE, 40% MPD, 5% PEG 8K, 100 MM NACL, 2 MM AVIBACTAM, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.94667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.47333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS REPORT THAT THE PROTEIN BEHAVES AS A DIMER IN REMARK 300 SOLUTION AS DETERMINED BY GEL FILTRATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 4 REMARK 465 ALA A 5 REMARK 465 LEU A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 PHE A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 SER A 14 REMARK 465 ILE A 15 REMARK 465 ILE A 16 REMARK 465 GLY A 17 REMARK 465 MET A 18 REMARK 465 PRO A 19 REMARK 465 ALA A 20 REMARK 465 VAL A 21 REMARK 465 ALA A 22 REMARK 465 LYS A 23 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 VAL B 3 REMARK 465 LEU B 4 REMARK 465 ALA B 5 REMARK 465 LEU B 6 REMARK 465 SER B 7 REMARK 465 ALA B 8 REMARK 465 VAL B 9 REMARK 465 PHE B 10 REMARK 465 LEU B 11 REMARK 465 VAL B 12 REMARK 465 ALA B 13 REMARK 465 SER B 14 REMARK 465 ILE B 15 REMARK 465 ILE B 16 REMARK 465 GLY B 17 REMARK 465 MET B 18 REMARK 465 PRO B 19 REMARK 465 ALA B 20 REMARK 465 MET C 1 REMARK 465 ARG C 2 REMARK 465 VAL C 3 REMARK 465 LEU C 4 REMARK 465 ALA C 5 REMARK 465 LEU C 6 REMARK 465 SER C 7 REMARK 465 ALA C 8 REMARK 465 VAL C 9 REMARK 465 PHE C 10 REMARK 465 LEU C 11 REMARK 465 VAL C 12 REMARK 465 ALA C 13 REMARK 465 SER C 14 REMARK 465 ILE C 15 REMARK 465 ILE C 16 REMARK 465 GLY C 17 REMARK 465 MET C 18 REMARK 465 PRO C 19 REMARK 465 ALA C 20 REMARK 465 MET D 1 REMARK 465 ARG D 2 REMARK 465 VAL D 3 REMARK 465 LEU D 4 REMARK 465 ALA D 5 REMARK 465 LEU D 6 REMARK 465 SER D 7 REMARK 465 ALA D 8 REMARK 465 VAL D 9 REMARK 465 PHE D 10 REMARK 465 LEU D 11 REMARK 465 VAL D 12 REMARK 465 ALA D 13 REMARK 465 SER D 14 REMARK 465 ILE D 15 REMARK 465 ILE D 16 REMARK 465 GLY D 17 REMARK 465 MET D 18 REMARK 465 PRO D 19 REMARK 465 ALA D 20 REMARK 465 VAL D 21 REMARK 465 ALA D 22 REMARK 465 LYS D 23 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 70 OAC NXL B 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 -132.12 51.41 REMARK 500 ASN A 106 49.91 -84.69 REMARK 500 VAL A 119 92.00 -69.07 REMARK 500 SER A 155 0.94 -153.15 REMARK 500 ASP A 159 17.86 -140.26 REMARK 500 ALA B 69 -130.57 50.61 REMARK 500 SER B 155 -3.93 -156.97 REMARK 500 ASP B 159 16.25 -142.02 REMARK 500 ALA C 69 -131.88 51.10 REMARK 500 ASN C 106 47.94 -83.66 REMARK 500 SER C 155 -4.77 -154.25 REMARK 500 ASP C 159 16.28 -140.85 REMARK 500 ALA D 69 -129.92 50.90 REMARK 500 ASN D 106 44.70 -84.47 REMARK 500 SER D 155 0.56 -150.78 REMARK 500 ASP D 159 20.49 -144.48 REMARK 500 ASN D 200 -169.27 -160.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NXL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NXL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NXL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NXL D 301 DBREF 4S2K A 1 265 UNP Q6XEC0 Q6XEC0_KLEPN 1 265 DBREF 4S2K B 1 265 UNP Q6XEC0 Q6XEC0_KLEPN 1 265 DBREF 4S2K C 1 265 UNP Q6XEC0 Q6XEC0_KLEPN 1 265 DBREF 4S2K D 1 265 UNP Q6XEC0 Q6XEC0_KLEPN 1 265 SEQRES 1 A 265 MET ARG VAL LEU ALA LEU SER ALA VAL PHE LEU VAL ALA SEQRES 2 A 265 SER ILE ILE GLY MET PRO ALA VAL ALA LYS GLU TRP GLN SEQRES 3 A 265 GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU HIS LYS SEQRES 4 A 265 SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN LYS GLN SEQRES 5 A 265 GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN GLN ALA SEQRES 6 A 265 PHE LEU PRO ALA SER THR PHE LYS ILE PRO ASN SER LEU SEQRES 7 A 265 ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU HIS GLN SEQRES 8 A 265 VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE ALA THR SEQRES 9 A 265 TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET LYS TYR SEQRES 10 A 265 SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG GLN ILE SEQRES 11 A 265 GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA PHE ASP SEQRES 12 A 265 TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SER PHE SEQRES 13 A 265 TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR GLU GLN SEQRES 14 A 265 ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS LEU HIS SEQRES 15 A 265 VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN ALA MET SEQRES 16 A 265 LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG ALA LYS SEQRES 17 A 265 THR GLY TYR SER THR ARG ILE GLU PRO LYS ILE GLY TRP SEQRES 18 A 265 TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP PHE SEQRES 19 A 265 PHE ALA MET ASN MET ASP MET PRO THR SER ASP GLY LEU SEQRES 20 A 265 GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU LYS GLN SEQRES 21 A 265 GLU LYS ILE ILE PRO SEQRES 1 B 265 MET ARG VAL LEU ALA LEU SER ALA VAL PHE LEU VAL ALA SEQRES 2 B 265 SER ILE ILE GLY MET PRO ALA VAL ALA LYS GLU TRP GLN SEQRES 3 B 265 GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU HIS LYS SEQRES 4 B 265 SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN LYS GLN SEQRES 5 B 265 GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN GLN ALA SEQRES 6 B 265 PHE LEU PRO ALA SER THR PHE LYS ILE PRO ASN SER LEU SEQRES 7 B 265 ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU HIS GLN SEQRES 8 B 265 VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE ALA THR SEQRES 9 B 265 TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET LYS TYR SEQRES 10 B 265 SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG GLN ILE SEQRES 11 B 265 GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA PHE ASP SEQRES 12 B 265 TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SER PHE SEQRES 13 B 265 TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR GLU GLN SEQRES 14 B 265 ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS LEU HIS SEQRES 15 B 265 VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN ALA MET SEQRES 16 B 265 LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG ALA LYS SEQRES 17 B 265 THR GLY TYR SER THR ARG ILE GLU PRO LYS ILE GLY TRP SEQRES 18 B 265 TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP PHE SEQRES 19 B 265 PHE ALA MET ASN MET ASP MET PRO THR SER ASP GLY LEU SEQRES 20 B 265 GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU LYS GLN SEQRES 21 B 265 GLU LYS ILE ILE PRO SEQRES 1 C 265 MET ARG VAL LEU ALA LEU SER ALA VAL PHE LEU VAL ALA SEQRES 2 C 265 SER ILE ILE GLY MET PRO ALA VAL ALA LYS GLU TRP GLN SEQRES 3 C 265 GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU HIS LYS SEQRES 4 C 265 SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN LYS GLN SEQRES 5 C 265 GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN GLN ALA SEQRES 6 C 265 PHE LEU PRO ALA SER THR PHE LYS ILE PRO ASN SER LEU SEQRES 7 C 265 ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU HIS GLN SEQRES 8 C 265 VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE ALA THR SEQRES 9 C 265 TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET LYS TYR SEQRES 10 C 265 SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG GLN ILE SEQRES 11 C 265 GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA PHE ASP SEQRES 12 C 265 TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SER PHE SEQRES 13 C 265 TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR GLU GLN SEQRES 14 C 265 ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS LEU HIS SEQRES 15 C 265 VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN ALA MET SEQRES 16 C 265 LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG ALA LYS SEQRES 17 C 265 THR GLY TYR SER THR ARG ILE GLU PRO LYS ILE GLY TRP SEQRES 18 C 265 TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP PHE SEQRES 19 C 265 PHE ALA MET ASN MET ASP MET PRO THR SER ASP GLY LEU SEQRES 20 C 265 GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU LYS GLN SEQRES 21 C 265 GLU LYS ILE ILE PRO SEQRES 1 D 265 MET ARG VAL LEU ALA LEU SER ALA VAL PHE LEU VAL ALA SEQRES 2 D 265 SER ILE ILE GLY MET PRO ALA VAL ALA LYS GLU TRP GLN SEQRES 3 D 265 GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU HIS LYS SEQRES 4 D 265 SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN LYS GLN SEQRES 5 D 265 GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN GLN ALA SEQRES 6 D 265 PHE LEU PRO ALA SER THR PHE LYS ILE PRO ASN SER LEU SEQRES 7 D 265 ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU HIS GLN SEQRES 8 D 265 VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE ALA THR SEQRES 9 D 265 TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET LYS TYR SEQRES 10 D 265 SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG GLN ILE SEQRES 11 D 265 GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA PHE ASP SEQRES 12 D 265 TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SER PHE SEQRES 13 D 265 TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR GLU GLN SEQRES 14 D 265 ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS LEU HIS SEQRES 15 D 265 VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN ALA MET SEQRES 16 D 265 LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG ALA LYS SEQRES 17 D 265 THR GLY TYR SER THR ARG ILE GLU PRO LYS ILE GLY TRP SEQRES 18 D 265 TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP PHE SEQRES 19 D 265 PHE ALA MET ASN MET ASP MET PRO THR SER ASP GLY LEU SEQRES 20 D 265 GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU LYS GLN SEQRES 21 D 265 GLU LYS ILE ILE PRO HET NXL A 301 17 HET NXL B 301 17 HET NXL C 301 17 HET NXL D 301 17 HETNAM NXL (2S,5R)-1-FORMYL-5-[(SULFOOXY)AMINO]PIPERIDINE-2- HETNAM 2 NXL CARBOXAMIDE HETSYN NXL AVIBACTAM, BOUND FORM, NXL104, BOUND FORM FORMUL 5 NXL 4(C7 H13 N3 O6 S) FORMUL 9 HOH *537(H2 O) HELIX 1 1 TRP A 31 HIS A 38 1 8 HELIX 2 2 ASN A 58 ASN A 63 1 6 HELIX 3 3 PRO A 68 THR A 71 5 4 HELIX 4 4 PHE A 72 LEU A 83 1 12 HELIX 5 5 ILE A 102 ASN A 106 5 5 HELIX 6 6 ASN A 110 TYR A 117 1 8 HELIX 7 7 VAL A 119 GLY A 131 1 13 HELIX 8 8 GLY A 131 PHE A 142 1 12 HELIX 9 9 SER A 155 GLY A 160 1 6 HELIX 10 10 SER A 165 HIS A 178 1 14 HELIX 11 11 SER A 184 MET A 195 1 12 HELIX 12 12 THR A 243 LEU A 247 5 5 HELIX 13 13 GLY A 248 GLU A 261 1 14 HELIX 14 14 TRP B 31 GLU B 37 1 7 HELIX 15 15 ASN B 58 ASN B 63 1 6 HELIX 16 16 PRO B 68 THR B 71 5 4 HELIX 17 17 PHE B 72 LEU B 83 1 12 HELIX 18 18 ILE B 102 ASN B 106 5 5 HELIX 19 19 ASN B 110 TYR B 117 1 8 HELIX 20 20 VAL B 119 ASP B 143 1 25 HELIX 21 21 SER B 155 GLY B 160 1 6 HELIX 22 22 SER B 165 HIS B 178 1 14 HELIX 23 23 SER B 184 MET B 195 1 12 HELIX 24 24 THR B 243 LEU B 247 5 5 HELIX 25 25 GLY B 248 GLU B 261 1 14 HELIX 26 26 TRP C 31 GLU C 37 1 7 HELIX 27 27 ASN C 58 ASN C 63 1 6 HELIX 28 28 PRO C 68 THR C 71 5 4 HELIX 29 29 PHE C 72 LEU C 83 1 12 HELIX 30 30 ILE C 102 ASN C 106 5 5 HELIX 31 31 ASN C 110 TYR C 117 1 8 HELIX 32 32 VAL C 119 ASP C 143 1 25 HELIX 33 33 SER C 155 GLY C 160 1 6 HELIX 34 34 ALA C 166 HIS C 178 1 13 HELIX 35 35 SER C 184 MET C 195 1 12 HELIX 36 36 THR C 243 LEU C 247 5 5 HELIX 37 37 GLY C 248 GLU C 261 1 14 HELIX 38 38 TRP D 31 HIS D 38 1 8 HELIX 39 39 ASN D 58 ASN D 63 1 6 HELIX 40 40 PRO D 68 THR D 71 5 4 HELIX 41 41 PHE D 72 LEU D 83 1 12 HELIX 42 42 ILE D 102 ASN D 106 5 5 HELIX 43 43 ASN D 110 TYR D 117 1 8 HELIX 44 44 VAL D 119 GLY D 131 1 13 HELIX 45 45 GLY D 131 PHE D 142 1 12 HELIX 46 46 SER D 155 GLY D 160 1 6 HELIX 47 47 SER D 165 HIS D 178 1 14 HELIX 48 48 SER D 184 MET D 195 1 12 HELIX 49 49 THR D 243 LEU D 247 5 5 HELIX 50 50 GLY D 248 GLU D 261 1 14 SHEET 1 A 7 TRP A 25 GLU A 27 0 SHEET 2 A 7 GLN A 53 THR A 56 1 O GLY A 54 N GLN A 26 SHEET 3 A 7 GLY A 42 ASN A 48 -1 N LEU A 46 O PHE A 55 SHEET 4 A 7 VAL A 232 ASP A 240 -1 O ASN A 238 N VAL A 43 SHEET 5 A 7 ILE A 219 GLU A 227 -1 N GLY A 224 O PHE A 235 SHEET 6 A 7 ILE A 204 SER A 212 -1 N ILE A 204 O GLU A 227 SHEET 7 A 7 LEU A 196 ALA A 199 -1 N GLU A 198 O ILE A 205 SHEET 1 B 7 TRP B 25 GLU B 27 0 SHEET 2 B 7 GLN B 53 THR B 56 1 O THR B 56 N GLN B 26 SHEET 3 B 7 GLY B 42 ASN B 48 -1 N LEU B 46 O PHE B 55 SHEET 4 B 7 VAL B 232 ASP B 240 -1 O ASN B 238 N VAL B 43 SHEET 5 B 7 ILE B 219 GLU B 227 -1 N GLY B 224 O PHE B 235 SHEET 6 B 7 ILE B 204 SER B 212 -1 N ILE B 204 O GLU B 227 SHEET 7 B 7 LEU B 196 ALA B 199 -1 N GLU B 198 O ILE B 205 SHEET 1 C 7 TRP C 25 GLU C 27 0 SHEET 2 C 7 GLN C 53 THR C 56 1 O GLY C 54 N GLN C 26 SHEET 3 C 7 GLY C 42 ASN C 48 -1 N LEU C 46 O PHE C 55 SHEET 4 C 7 VAL C 232 ASP C 240 -1 O ASN C 238 N VAL C 43 SHEET 5 C 7 ILE C 219 GLU C 227 -1 N GLY C 224 O PHE C 235 SHEET 6 C 7 ILE C 204 SER C 212 -1 N GLY C 210 O TRP C 221 SHEET 7 C 7 LEU C 196 ALA C 199 -1 N GLU C 198 O ILE C 205 SHEET 1 D 2 ALA C 65 PHE C 66 0 SHEET 2 D 2 ILE C 164 SER C 165 -1 O ILE C 164 N PHE C 66 SHEET 1 E 7 TRP D 25 GLU D 27 0 SHEET 2 E 7 GLN D 53 THR D 56 1 O GLY D 54 N GLN D 26 SHEET 3 E 7 GLY D 42 ASN D 48 -1 N LEU D 46 O PHE D 55 SHEET 4 E 7 VAL D 232 ASP D 240 -1 O ASN D 238 N VAL D 43 SHEET 5 E 7 ILE D 219 GLU D 227 -1 N GLY D 224 O PHE D 235 SHEET 6 E 7 ILE D 204 SER D 212 -1 N ILE D 204 O GLU D 227 SHEET 7 E 7 LEU D 196 ALA D 199 -1 N GLU D 198 O ILE D 205 LINK OG SER A 70 CAN NXL A 301 1555 1555 1.42 LINK OG SER B 70 CAN NXL B 301 1555 1555 1.42 LINK OG SER C 70 CAN NXL C 301 1555 1555 1.44 LINK OG SER D 70 CAN NXL D 301 1555 1555 1.42 CISPEP 1 GLU A 216 PRO A 217 0 1.03 CISPEP 2 GLU B 216 PRO B 217 0 3.19 CISPEP 3 GLU C 216 PRO C 217 0 2.43 CISPEP 4 GLU D 216 PRO D 217 0 0.94 SITE 1 AC1 12 ALA A 69 SER A 70 SER A 118 VAL A 120 SITE 2 AC1 12 LEU A 158 LYS A 208 THR A 209 GLY A 210 SITE 3 AC1 12 TYR A 211 ARG A 250 HOH A 521 HOH A 527 SITE 1 AC2 13 ALA B 69 SER B 70 SER B 118 VAL B 120 SITE 2 AC2 13 LEU B 158 LYS B 208 THR B 209 GLY B 210 SITE 3 AC2 13 TYR B 211 ARG B 250 HOH B 510 HOH B 524 SITE 4 AC2 13 HOH B 531 SITE 1 AC3 10 ALA C 69 SER C 70 SER C 118 VAL C 120 SITE 2 AC3 10 LEU C 158 LYS C 208 THR C 209 GLY C 210 SITE 3 AC3 10 TYR C 211 ARG C 250 SITE 1 AC4 10 ALA D 69 SER D 70 SER D 118 VAL D 120 SITE 2 AC4 10 LEU D 158 LYS D 208 THR D 209 GLY D 210 SITE 3 AC4 10 TYR D 211 ARG D 250 CRYST1 142.780 142.780 52.420 90.00 90.00 120.00 P 32 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007004 0.004044 0.000000 0.00000 SCALE2 0.000000 0.008087 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019077 0.00000 MASTER 468 0 4 50 30 0 13 6 0 0 0 84 END