HEADER HYDROLASE/HYDROLASE INHIBITOR 22-AUG-14 4R5V TITLE STRUCTURE OF THE M1 ALANYLAMINOPEPTIDASE FROM MALARIA COMPLEXED WITH A TITLE 2 HYDROXAMIC ACID-BASED INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: M1 FAMILY AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 195-1084; COMPND 5 SYNONYM: PFA-M1; COMPND 6 EC: 3.4.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM FCB1/COLUMBIA; SOURCE 3 ORGANISM_TAXID: 186763; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTRCHIS-2B KEYWDS PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.DRINKWATER,S.MCGOWAN REVDAT 2 26-NOV-14 4R5V 1 JRNL REVDAT 1 29-OCT-14 4R5V 0 JRNL AUTH S.N.MISTRY,N.DRINKWATER,C.RUGGERI,K.K.SIVARAMAN, JRNL AUTH 2 S.LOGANATHAN,S.FLETCHER,M.DRAG,A.PAIARDINI,V.M.AVERY, JRNL AUTH 3 P.J.SCAMMELLS,S.MCGOWAN JRNL TITL TWO-PRONGED ATTACK: DUAL INHIBITION OF PLASMODIUM FALCIPARUM JRNL TITL 2 M1 AND M17 METALLOAMINOPEPTIDASES BY A NOVEL SERIES OF JRNL TITL 3 HYDROXAMIC ACID-BASED INHIBITORS. JRNL REF J.MED.CHEM. V. 57 9168 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25299353 JRNL DOI 10.1021/JM501323A REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 57571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.5159 - 5.7812 1.00 2781 167 0.1633 0.1820 REMARK 3 2 5.7812 - 4.5938 1.00 2701 150 0.1467 0.1835 REMARK 3 3 4.5938 - 4.0146 1.00 2675 127 0.1411 0.1948 REMARK 3 4 4.0146 - 3.6482 1.00 2637 147 0.1531 0.1863 REMARK 3 5 3.6482 - 3.3870 1.00 2640 124 0.1598 0.1844 REMARK 3 6 3.3870 - 3.1876 1.00 2622 143 0.1705 0.2160 REMARK 3 7 3.1876 - 3.0281 1.00 2604 128 0.1891 0.2035 REMARK 3 8 3.0281 - 2.8964 1.00 2593 139 0.1851 0.2786 REMARK 3 9 2.8964 - 2.7849 0.99 2602 146 0.1982 0.2623 REMARK 3 10 2.7849 - 2.6889 0.99 2584 139 0.1989 0.2531 REMARK 3 11 2.6889 - 2.6049 0.99 2585 129 0.1967 0.2312 REMARK 3 12 2.6049 - 2.5305 0.99 2598 146 0.2058 0.2238 REMARK 3 13 2.5305 - 2.4639 0.99 2559 144 0.2066 0.2624 REMARK 3 14 2.4639 - 2.4038 0.99 2573 119 0.2145 0.2843 REMARK 3 15 2.4038 - 2.3492 1.00 2572 133 0.2193 0.2355 REMARK 3 16 2.3492 - 2.2992 0.99 2580 141 0.2170 0.2877 REMARK 3 17 2.2992 - 2.2532 0.98 2540 138 0.2272 0.2732 REMARK 3 18 2.2532 - 2.2107 1.00 2607 116 0.2306 0.2838 REMARK 3 19 2.2107 - 2.1712 0.98 2525 144 0.2297 0.3201 REMARK 3 20 2.1712 - 2.1344 0.99 2547 148 0.2427 0.2742 REMARK 3 21 2.1344 - 2.1000 0.99 2531 147 0.2518 0.2681 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7493 REMARK 3 ANGLE : 0.737 10162 REMARK 3 CHIRALITY : 0.031 1123 REMARK 3 PLANARITY : 0.003 1299 REMARK 3 DIHEDRAL : 13.681 2818 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: all REMARK 3 ORIGIN FOR THE GROUP (A): 17.6033 3.8310 10.2029 REMARK 3 T TENSOR REMARK 3 T11: 0.1475 T22: 0.1711 REMARK 3 T33: 0.1446 T12: 0.0023 REMARK 3 T13: 0.0159 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.5201 L22: 1.3881 REMARK 3 L33: 0.9325 L12: -0.2313 REMARK 3 L13: 0.0469 L23: 0.4024 REMARK 3 S TENSOR REMARK 3 S11: -0.0895 S12: -0.0477 S13: 0.0471 REMARK 3 S21: 0.0402 S22: 0.0339 S23: 0.0290 REMARK 3 S31: -0.1256 S32: -0.0127 S33: 0.0538 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R5V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-14. REMARK 100 THE RCSB ID CODE IS RCSB086937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SILICON 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57652 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 11.200 REMARK 200 R MERGE (I) : 0.20100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 0.01300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3EBG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% (V/V) PEG 8000, 10* (V/V) REMARK 280 GLYCEROL, 0.1 M TRIS PH 8.5, 0.2 M MGCL2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.61100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.34900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.79650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.34900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.61100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.79650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 202 CD CE NZ REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 ASP A 222 CG OD1 OD2 REMARK 470 ARG A 228 CD NE CZ NH1 NH2 REMARK 470 LYS A 252 CD CE NZ REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 LYS A 287 CE NZ REMARK 470 GLU A 299 CD OE1 OE2 REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 LYS A 480 CD CE NZ REMARK 470 GLU A 572 CG CD OE1 OE2 REMARK 470 GLU A 597 CG CD OE1 OE2 REMARK 470 LYS A 608 CG CD CE NZ REMARK 470 GLU A 663 CG CD OE1 OE2 REMARK 470 LYS A 682 CG CD CE NZ REMARK 470 GLU A 683 CG CD OE1 OE2 REMARK 470 GLU A 699 CD OE1 OE2 REMARK 470 HIS A 815 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 884 CG CD OE1 OE2 REMARK 470 LYS A 973 CG CD CE NZ REMARK 470 GLU A 977 CD OE1 OE2 REMARK 470 LYS A 980 CD CE NZ REMARK 470 LYS A1019 CD CE NZ REMARK 470 LYS A1084 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 835 O HOH A 1759 1.60 REMARK 500 ND2 ASN A 573 OE1 GLU A 1076 1.98 REMARK 500 OE2 GLU A 265 O HOH A 1769 2.08 REMARK 500 O HOH A 1740 O HOH A 1741 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 255 139.91 -174.54 REMARK 500 GLU A 274 -39.55 -135.10 REMARK 500 LYS A 311 -107.11 57.00 REMARK 500 ASP A 331 75.36 -69.53 REMARK 500 VAL A 459 -157.39 -126.95 REMARK 500 LYS A 465 93.60 -37.72 REMARK 500 LEU A 475 -35.51 -137.51 REMARK 500 SER A 549 -69.43 -96.40 REMARK 500 ASN A 700 -4.65 -145.16 REMARK 500 PHE A 736 74.66 53.89 REMARK 500 ASP A 974 33.96 -99.44 REMARK 500 VAL A 986 -57.86 -124.79 REMARK 500 LYS A 988 -129.21 56.39 REMARK 500 HIS A1011 31.77 -91.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1331 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH A1758 DISTANCE = 5.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 519 OE1 REMARK 620 2 HIS A 500 NE2 108.6 REMARK 620 3 HIS A 496 NE2 105.0 98.6 REMARK 620 4 R5V A1102 O 86.0 145.0 108.3 REMARK 620 5 R5V A1102 OAL 150.1 83.8 99.5 70.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R5V A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1105 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EBG RELATED DB: PDB REMARK 900 UNLIGANDED FORM OF ENZYME REMARK 900 RELATED ID: 4R5T RELATED DB: PDB REMARK 900 RELATED ID: 4R5X RELATED DB: PDB REMARK 900 RELATED ID: 4R6T RELATED DB: PDB REMARK 900 RELATED ID: 4R76 RELATED DB: PDB REMARK 900 RELATED ID: 4R7M RELATED DB: PDB DBREF 4R5V A 196 1084 UNP O96935 AMP1_PLAFQ 196 1084 SEQADV 4R5V HIS A 190 UNP O96935 EXPRESSION TAG SEQADV 4R5V HIS A 191 UNP O96935 EXPRESSION TAG SEQADV 4R5V HIS A 192 UNP O96935 EXPRESSION TAG SEQADV 4R5V HIS A 193 UNP O96935 EXPRESSION TAG SEQADV 4R5V HIS A 194 UNP O96935 EXPRESSION TAG SEQADV 4R5V HIS A 195 UNP O96935 EXPRESSION TAG SEQADV 4R5V GLN A 213 UNP O96935 ASN 213 ENGINEERED MUTATION SEQADV 4R5V GLN A 223 UNP O96935 ASN 223 ENGINEERED MUTATION SEQADV 4R5V PRO A 378 UNP O96935 HIS 378 ENGINEERED MUTATION SEQADV 4R5V GLN A 501 UNP O96935 ASN 501 ENGINEERED MUTATION SEQADV 4R5V GLN A 745 UNP O96935 ASN 745 ENGINEERED MUTATION SEQADV 4R5V GLN A 795 UNP O96935 ASN 795 ENGINEERED MUTATION SEQADV 4R5V GLN A 1069 UNP O96935 ASN 1069 ENGINEERED MUTATION SEQRES 1 A 895 HIS HIS HIS HIS HIS HIS PRO LYS ILE HIS TYR ARG LYS SEQRES 2 A 895 ASP TYR LYS PRO SER GLY PHE ILE ILE ASN GLN VAL THR SEQRES 3 A 895 LEU ASN ILE ASN ILE HIS ASP GLN GLU THR ILE VAL ARG SEQRES 4 A 895 SER VAL LEU ASP MET ASP ILE SER LYS HIS ASN VAL GLY SEQRES 5 A 895 GLU ASP LEU VAL PHE ASP GLY VAL GLY LEU LYS ILE ASN SEQRES 6 A 895 GLU ILE SER ILE ASN ASN LYS LYS LEU VAL GLU GLY GLU SEQRES 7 A 895 GLU TYR THR TYR ASP ASN GLU PHE LEU THR ILE PHE SER SEQRES 8 A 895 LYS PHE VAL PRO LYS SER LYS PHE ALA PHE SER SER GLU SEQRES 9 A 895 VAL ILE ILE HIS PRO GLU THR ASN TYR ALA LEU THR GLY SEQRES 10 A 895 LEU TYR LYS SER LYS ASN ILE ILE VAL SER GLN CYS GLU SEQRES 11 A 895 ALA THR GLY PHE ARG ARG ILE THR PHE PHE ILE ASP ARG SEQRES 12 A 895 PRO ASP MET MET ALA LYS TYR ASP VAL THR VAL THR ALA SEQRES 13 A 895 ASP LYS GLU LYS TYR PRO VAL LEU LEU SER ASN GLY ASP SEQRES 14 A 895 LYS VAL ASN GLU PHE GLU ILE PRO GLY GLY ARG HIS GLY SEQRES 15 A 895 ALA ARG PHE ASN ASP PRO PRO LEU LYS PRO CYS TYR LEU SEQRES 16 A 895 PHE ALA VAL VAL ALA GLY ASP LEU LYS HIS LEU SER ALA SEQRES 17 A 895 THR TYR ILE THR LYS TYR THR LYS LYS LYS VAL GLU LEU SEQRES 18 A 895 TYR VAL PHE SER GLU GLU LYS TYR VAL SER LYS LEU GLN SEQRES 19 A 895 TRP ALA LEU GLU CYS LEU LYS LYS SER MET ALA PHE ASP SEQRES 20 A 895 GLU ASP TYR PHE GLY LEU GLU TYR ASP LEU SER ARG LEU SEQRES 21 A 895 ASN LEU VAL ALA VAL SER ASP PHE ASN VAL GLY ALA MET SEQRES 22 A 895 GLU ASN LYS GLY LEU ASN ILE PHE ASN ALA ASN SER LEU SEQRES 23 A 895 LEU ALA SER LYS LYS ASN SER ILE ASP PHE SER TYR ALA SEQRES 24 A 895 ARG ILE LEU THR VAL VAL GLY HIS GLU TYR PHE HIS GLN SEQRES 25 A 895 TYR THR GLY ASN ARG VAL THR LEU ARG ASP TRP PHE GLN SEQRES 26 A 895 LEU THR LEU LYS GLU GLY LEU THR VAL HIS ARG GLU ASN SEQRES 27 A 895 LEU PHE SER GLU GLU MET THR LYS THR VAL THR THR ARG SEQRES 28 A 895 LEU SER HIS VAL ASP LEU LEU ARG SER VAL GLN PHE LEU SEQRES 29 A 895 GLU ASP SER SER PRO LEU SER HIS PRO ILE ARG PRO GLU SEQRES 30 A 895 SER TYR VAL SER MET GLU ASN PHE TYR THR THR THR VAL SEQRES 31 A 895 TYR ASP LYS GLY SER GLU VAL MET ARG MET TYR LEU THR SEQRES 32 A 895 ILE LEU GLY GLU GLU TYR TYR LYS LYS GLY PHE ASP ILE SEQRES 33 A 895 TYR ILE LYS LYS ASN ASP GLY ASN THR ALA THR CYS GLU SEQRES 34 A 895 ASP PHE ASN TYR ALA MET GLU GLN ALA TYR LYS MET LYS SEQRES 35 A 895 LYS ALA ASP ASN SER ALA ASN LEU ASN GLN TYR LEU LEU SEQRES 36 A 895 TRP PHE SER GLN SER GLY THR PRO HIS VAL SER PHE LYS SEQRES 37 A 895 TYR ASN TYR ASP ALA GLU LYS LYS GLN TYR SER ILE HIS SEQRES 38 A 895 VAL ASN GLN TYR THR LYS PRO ASP GLU ASN GLN LYS GLU SEQRES 39 A 895 LYS LYS PRO LEU PHE ILE PRO ILE SER VAL GLY LEU ILE SEQRES 40 A 895 ASN PRO GLU ASN GLY LYS GLU MET ILE SER GLN THR THR SEQRES 41 A 895 LEU GLU LEU THR LYS GLU SER ASP THR PHE VAL PHE ASN SEQRES 42 A 895 ASN ILE ALA VAL LYS PRO ILE PRO SER LEU PHE ARG GLY SEQRES 43 A 895 PHE SER ALA PRO VAL TYR ILE GLU ASP GLN LEU THR ASP SEQRES 44 A 895 GLU GLU ARG ILE LEU LEU LEU LYS TYR ASP SER ASP ALA SEQRES 45 A 895 PHE VAL ARG TYR ASN SER CYS THR ASN ILE TYR MET LYS SEQRES 46 A 895 GLN ILE LEU MET ASN TYR ASN GLU PHE LEU LYS ALA LYS SEQRES 47 A 895 ASN GLU LYS LEU GLU SER PHE GLN LEU THR PRO VAL ASN SEQRES 48 A 895 ALA GLN PHE ILE ASP ALA ILE LYS TYR LEU LEU GLU ASP SEQRES 49 A 895 PRO HIS ALA ASP ALA GLY PHE LYS SER TYR ILE VAL SER SEQRES 50 A 895 LEU PRO GLN ASP ARG TYR ILE ILE ASN PHE VAL SER ASN SEQRES 51 A 895 LEU ASP THR ASP VAL LEU ALA ASP THR LYS GLU TYR ILE SEQRES 52 A 895 TYR LYS GLN ILE GLY ASP LYS LEU ASN ASP VAL TYR TYR SEQRES 53 A 895 LYS MET PHE LYS SER LEU GLU ALA LYS ALA ASP ASP LEU SEQRES 54 A 895 THR TYR PHE ASN ASP GLU SER HIS VAL ASP PHE ASP GLN SEQRES 55 A 895 MET ASN MET ARG THR LEU ARG ASN THR LEU LEU SER LEU SEQRES 56 A 895 LEU SER LYS ALA GLN TYR PRO ASN ILE LEU ASN GLU ILE SEQRES 57 A 895 ILE GLU HIS SER LYS SER PRO TYR PRO SER ASN TRP LEU SEQRES 58 A 895 THR SER LEU SER VAL SER ALA TYR PHE ASP LYS TYR PHE SEQRES 59 A 895 GLU LEU TYR ASP LYS THR TYR LYS LEU SER LYS ASP ASP SEQRES 60 A 895 GLU LEU LEU LEU GLN GLU TRP LEU LYS THR VAL SER ARG SEQRES 61 A 895 SER ASP ARG LYS ASP ILE TYR GLU ILE LEU LYS LYS LEU SEQRES 62 A 895 GLU ASN GLU VAL LEU LYS ASP SER LYS ASN PRO ASN ASP SEQRES 63 A 895 ILE ARG ALA VAL TYR LEU PRO PHE THR ASN ASN LEU ARG SEQRES 64 A 895 ARG PHE HIS ASP ILE SER GLY LYS GLY TYR LYS LEU ILE SEQRES 65 A 895 ALA GLU VAL ILE THR LYS THR ASP LYS PHE ASN PRO MET SEQRES 66 A 895 VAL ALA THR GLN LEU CYS GLU PRO PHE LYS LEU TRP ASN SEQRES 67 A 895 LYS LEU ASP THR LYS ARG GLN GLU LEU MET LEU ASN GLU SEQRES 68 A 895 MET ASN THR MET LEU GLN GLU PRO GLN ILE SER ASN ASN SEQRES 69 A 895 LEU LYS GLU TYR LEU LEU ARG LEU THR ASN LYS HET ZN A1101 1 HET R5V A1102 23 HET GOL A1103 6 HET GOL A1104 6 HET GOL A1105 6 HETNAM ZN ZINC ION HETNAM R5V N-{(1R)-2-(HYDROXYAMINO)-2-OXO-1-[4-(1H-PYRAZOL-1-YL) HETNAM 2 R5V PHENYL]ETHYL}-2,2-DIMETHYLPROPANAMIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 R5V C16 H20 N4 O3 FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *569(H2 O) HELIX 1 1 LYS A 202 TYR A 204 5 3 HELIX 2 2 SER A 280 VAL A 283 5 4 HELIX 3 3 HIS A 297 ASN A 301 5 5 HELIX 4 4 GLY A 322 ILE A 326 5 5 HELIX 5 5 PRO A 381 PHE A 385 5 5 HELIX 6 6 LYS A 417 LYS A 421 5 5 HELIX 7 7 LEU A 422 TYR A 439 1 18 HELIX 8 8 ASN A 473 LEU A 475 5 3 HELIX 9 9 ASP A 484 ASN A 505 1 22 HELIX 10 10 ASP A 511 PHE A 513 5 3 HELIX 11 11 GLN A 514 LYS A 535 1 22 HELIX 12 12 VAL A 537 SER A 556 1 20 HELIX 13 13 SER A 570 PHE A 574 5 5 HELIX 14 14 THR A 576 ASN A 610 1 35 HELIX 15 15 THR A 616 ALA A 633 1 18 HELIX 16 16 ASN A 640 TYR A 642 5 3 HELIX 17 17 LEU A 643 GLN A 648 1 6 HELIX 18 18 THR A 747 ASP A 758 1 12 HELIX 19 19 ASP A 760 GLU A 789 1 30 HELIX 20 20 ASN A 800 GLU A 812 1 13 HELIX 21 21 ASP A 817 VAL A 825 1 9 HELIX 22 22 GLN A 829 ILE A 834 1 6 HELIX 23 23 ASN A 835 VAL A 837 5 3 HELIX 24 24 ASP A 841 LEU A 871 1 31 HELIX 25 25 LEU A 871 ASP A 876 1 6 HELIX 26 26 ASP A 888 ALA A 908 1 21 HELIX 27 27 ASN A 912 SER A 921 1 10 HELIX 28 28 TYR A 925 SER A 936 1 12 HELIX 29 29 ALA A 937 PHE A 939 5 3 HELIX 30 30 LYS A 941 LYS A 954 1 14 HELIX 31 31 ASP A 956 SER A 970 1 15 HELIX 32 32 ASP A 974 VAL A 986 1 13 HELIX 33 33 ASN A 992 LEU A 1001 1 10 HELIX 34 34 PRO A 1002 ASN A 1006 5 5 HELIX 35 35 GLY A 1015 LYS A 1030 1 16 HELIX 36 36 ASN A 1032 LEU A 1039 1 8 HELIX 37 37 CYS A 1040 LEU A 1049 5 10 HELIX 38 38 ASP A 1050 GLN A 1066 1 17 HELIX 39 39 SER A 1071 THR A 1082 1 12 SHEET 1 A 2 HIS A 199 TYR A 200 0 SHEET 2 A 2 SER A 567 TYR A 568 -1 O TYR A 568 N HIS A 199 SHEET 1 B 8 LYS A 261 LYS A 262 0 SHEET 2 B 8 LYS A 252 ILE A 258 -1 N ILE A 258 O LYS A 261 SHEET 3 B 8 PHE A 288 ILE A 296 -1 O GLU A 293 N ASN A 254 SHEET 4 B 8 THR A 225 ILE A 235 -1 N LEU A 231 O PHE A 290 SHEET 5 B 8 PHE A 209 ILE A 220 -1 N ASN A 219 O ILE A 226 SHEET 6 B 8 ALA A 337 ASP A 346 1 O THR A 342 N ILE A 218 SHEET 7 B 8 ARG A 369 LYS A 380 -1 O PHE A 374 N VAL A 341 SHEET 8 B 8 ASP A 358 ILE A 365 -1 N ILE A 365 O ARG A 369 SHEET 1 C 3 LEU A 244 ASP A 247 0 SHEET 2 C 3 PHE A 275 ILE A 278 -1 O LEU A 276 N PHE A 246 SHEET 3 C 3 TYR A 269 TYR A 271 -1 N THR A 270 O THR A 277 SHEET 1 D 4 GLY A 306 SER A 310 0 SHEET 2 D 4 ILE A 313 GLN A 317 -1 O ILE A 313 N SER A 310 SHEET 3 D 4 VAL A 387 GLY A 390 -1 O ALA A 389 N ILE A 314 SHEET 4 D 4 VAL A 352 SER A 355 -1 N LEU A 354 O VAL A 388 SHEET 1 E 5 LEU A 392 ILE A 400 0 SHEET 2 E 5 LYS A 407 GLU A 415 -1 O VAL A 408 N TYR A 399 SHEET 3 E 5 ARG A 448 VAL A 454 1 O LEU A 451 N PHE A 413 SHEET 4 E 5 LEU A 467 ASN A 471 1 O PHE A 470 N VAL A 452 SHEET 5 E 5 ALA A 461 MET A 462 -1 N MET A 462 O ILE A 469 SHEET 1 F 2 VAL A 507 LEU A 509 0 SHEET 2 F 2 ASN A 613 ALA A 615 1 O ALA A 615 N THR A 508 SHEET 1 G 4 SER A 716 PHE A 721 0 SHEET 2 G 4 GLN A 666 TYR A 674 -1 N TYR A 667 O PHE A 721 SHEET 3 G 4 HIS A 653 ASP A 661 -1 N HIS A 653 O TYR A 674 SHEET 4 G 4 TYR A 741 GLU A 743 1 O TYR A 741 N VAL A 654 SHEET 1 H 3 THR A 708 LEU A 712 0 SHEET 2 H 3 ILE A 689 ILE A 696 -1 N ILE A 691 O LEU A 710 SHEET 3 H 3 ILE A 729 LEU A 732 -1 O SER A 731 N GLY A 694 LINK OE1 GLU A 519 ZN ZN A1101 1555 1555 2.06 LINK NE2 HIS A 500 ZN ZN A1101 1555 1555 2.06 LINK NE2 HIS A 496 ZN ZN A1101 1555 1555 2.09 LINK ZN ZN A1101 O R5V A1102 1555 1555 2.10 LINK ZN ZN A1101 OAL R5V A1102 1555 1555 2.58 CISPEP 1 GLU A 319 ALA A 320 0 2.52 SITE 1 AC1 4 HIS A 496 HIS A 500 GLU A 519 R5V A1102 SITE 1 AC2 16 VAL A 459 GLY A 460 ALA A 461 MET A 462 SITE 2 AC2 16 GLU A 463 ARG A 489 HIS A 496 GLU A 497 SITE 3 AC2 16 HIS A 500 GLU A 519 GLU A 572 TYR A 575 SITE 4 AC2 16 TYR A 580 ZN A1101 GOL A1105 HOH A1358 SITE 1 AC3 8 VAL A 459 GLY A 460 ASN A 471 ASN A 473 SITE 2 AC3 8 SER A 474 ARG A 489 ARG A 997 HOH A1215 SITE 1 AC4 5 ASN A 573 TYR A 575 THR A 576 THR A1037 SITE 2 AC4 5 HOH A1298 SITE 1 AC5 8 TYR A 575 THR A 576 THR A 577 TYR A 580 SITE 2 AC5 8 ASP A 581 R5V A1102 HOH A1449 HOH A1699 CRYST1 75.222 109.593 118.698 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013294 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009125 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008425 0.00000 MASTER 372 0 5 39 31 0 11 6 0 0 0 69 END