HEADER LIGASE 13-AUG-14 4R2Y TITLE CRYSTAL STRUCTURE OF APC11 RING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANAPHASE-PROMOTING COMPLEX SUBUNIT 11; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RING DOMAIN (UNP RESIDUES 17-84); COMPND 5 SYNONYM: APC11, CYCLOSOME SUBUNIT 11, HEPATOCELLULAR CARCINOMA- COMPND 6 ASSOCIATED RING FINGER PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ANAPC11, HSPC214; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RING DOMAIN, E3 UBIQUITIN LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR N.G.BROWN,E.R.WATSON,F.WEISSMANN,M.A.JARVIS,R.VANDERLINDEN, AUTHOR 2 C.R.R.GRACE,J.J.FRYE,P.DUBE,R.QIAO,G.PETZOLD,S.E.CHO,O.ALSHARIF, AUTHOR 3 J.BAO,J.ZHENG,A.NOURSE,I.KURINOV,J.M.PETERS,H.STARK,B.A.SCHULMAN REVDAT 2 19-NOV-14 4R2Y 1 JRNL REVDAT 1 29-OCT-14 4R2Y 0 JRNL AUTH N.G.BROWN,E.R.WATSON,F.WEISSMANN,M.A.JARVIS,R.VANDERLINDEN, JRNL AUTH 2 C.R.GRACE,J.J.FRYE,R.QIAO,P.DUBE,G.PETZOLD,S.E.CHO, JRNL AUTH 3 O.ALSHARIF,J.BAO,I.F.DAVIDSON,J.J.ZHENG,A.NOURSE,I.KURINOV, JRNL AUTH 4 J.M.PETERS,H.STARK,B.A.SCHULMAN JRNL TITL MECHANISM OF POLYUBIQUITINATION BY HUMAN ANAPHASE-PROMOTING JRNL TITL 2 COMPLEX: RING REPURPOSING FOR UBIQUITIN CHAIN ASSEMBLY. JRNL REF MOL.CELL V. 56 246 2014 JRNL REFN ISSN 1097-2765 JRNL PMID 25306923 JRNL DOI 10.1016/J.MOLCEL.2014.09.009 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 24442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.180 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.7195 - 4.2294 0.97 1734 155 0.1999 0.2092 REMARK 3 2 4.2294 - 3.3570 0.99 1695 150 0.1671 0.1938 REMARK 3 3 3.3570 - 2.9327 0.98 1661 149 0.1839 0.2396 REMARK 3 4 2.9327 - 2.6646 0.98 1666 148 0.1961 0.2308 REMARK 3 5 2.6646 - 2.4736 0.98 1670 149 0.1893 0.2411 REMARK 3 6 2.4736 - 2.3277 0.96 1614 143 0.1871 0.2146 REMARK 3 7 2.3277 - 2.2111 0.97 1645 148 0.1837 0.2528 REMARK 3 8 2.2111 - 2.1149 0.97 1639 145 0.1863 0.2032 REMARK 3 9 2.1149 - 2.0335 0.96 1618 144 0.1858 0.2328 REMARK 3 10 2.0335 - 1.9633 0.97 1637 147 0.1859 0.2330 REMARK 3 11 1.9633 - 1.9019 0.96 1610 142 0.2042 0.2765 REMARK 3 12 1.9019 - 1.8475 0.96 1612 145 0.2193 0.2841 REMARK 3 13 1.8475 - 1.7989 0.88 1475 131 0.2599 0.2670 REMARK 3 14 1.7989 - 1.7550 0.69 1166 104 0.3180 0.3377 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.61 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 40.01 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46490 REMARK 3 B22 (A**2) : -0.04580 REMARK 3 B33 (A**2) : 0.51070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.21860 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2098 REMARK 3 ANGLE : 1.169 2829 REMARK 3 CHIRALITY : 0.083 271 REMARK 3 PLANARITY : 0.007 368 REMARK 3 DIHEDRAL : 18.125 765 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: all REMARK 3 ORIGIN FOR THE GROUP (A): 43.5023 1.6788 15.4601 REMARK 3 T TENSOR REMARK 3 T11: 0.0852 T22: 0.0658 REMARK 3 T33: 0.0985 T12: 0.0071 REMARK 3 T13: -0.0082 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.3214 L22: 0.2878 REMARK 3 L33: 0.7040 L12: 0.1101 REMARK 3 L13: -0.2524 L23: 0.0426 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: 0.0450 S13: 0.0181 REMARK 3 S21: 0.0137 S22: 0.0460 S23: -0.0665 REMARK 3 S31: 0.0032 S32: -0.0127 S33: -0.0689 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-14. REMARK 100 THE RCSB ID CODE IS RCSB086832. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2827 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS-RAPD REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24444 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.755 REMARK 200 RESOLUTION RANGE LOW (A) : 61.681 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG3350, 0.2 M NANO3, 0.1 M BIS- REMARK 280 TRIS, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE STRUCTURE IS OF A DOMAIN-SWAPPED DIMER. THE DOMAIN SWAP REMARK 300 OCCURS AT VAL 69. TO GENERATE THE BIOLOGICAL UNIT, IT IS NECESSARY REMARK 300 TO PAIR RESIDUES 21-68 FROM CHAIN A WITH 69-84 OF CHAIN B, RESIDUES REMARK 300 21-68 FROM CHAIN B WITH 69-84 OF CHAIN A, RESIDUES 20-68 OF CHAIN C REMARK 300 WITH 69-84 OF CHAIN D, AND 20-68 OF CHAIN D WITH 69-84 OF CHAIN C. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 84.26590 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 61.68067 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 104.89200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 17 REMARK 465 ALA A 18 REMARK 465 ASN A 19 REMARK 465 ASP A 20 REMARK 465 VAL B 17 REMARK 465 ALA B 18 REMARK 465 ASN B 19 REMARK 465 ASP B 20 REMARK 465 LYS B 38 REMARK 465 VAL B 39 REMARK 465 PRO B 40 REMARK 465 GLY B 41 REMARK 465 ASP B 42 REMARK 465 VAL C 17 REMARK 465 ALA C 18 REMARK 465 ASN C 19 REMARK 465 VAL D 17 REMARK 465 ALA D 18 REMARK 465 ASN D 19 REMARK 465 VAL D 39 REMARK 465 PRO D 40 REMARK 465 GLY D 41 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 70 CG CD OE1 NE2 REMARK 470 ASP C 20 CG OD1 OD2 REMARK 470 GLU C 21 CG CD OE1 OE2 REMARK 470 GLU D 84 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 52 9.09 88.29 REMARK 500 SER B 52 -2.96 83.67 REMARK 500 SER C 52 3.16 87.11 REMARK 500 SER D 52 4.03 89.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 53 ND1 REMARK 620 2 CYS A 51 SG 112.5 REMARK 620 3 CYS B 73 SG 111.7 105.7 REMARK 620 4 CYS B 76 SG 111.2 109.2 106.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 58 ND1 REMARK 620 2 CYS B 37 SG 100.5 REMARK 620 3 CYS B 44 SG 110.6 114.1 REMARK 620 4 CYS B 34 SG 113.8 114.3 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 56 ND1 REMARK 620 2 CYS A 59 SG 116.7 REMARK 620 3 CYS A 23 SG 105.8 116.2 REMARK 620 4 CYS A 26 SG 98.2 107.2 111.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 58 ND1 REMARK 620 2 CYS A 34 SG 112.4 REMARK 620 3 CYS A 44 SG 111.6 108.0 REMARK 620 4 CYS A 37 SG 93.3 117.4 113.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 58 ND1 REMARK 620 2 CYS C 34 SG 113.8 REMARK 620 3 CYS C 44 SG 106.0 111.3 REMARK 620 4 CYS C 37 SG 94.2 115.4 114.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 56 ND1 REMARK 620 2 CYS B 59 SG 118.2 REMARK 620 3 CYS B 26 SG 99.7 109.7 REMARK 620 4 CYS B 23 SG 102.3 116.0 109.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 56 ND1 REMARK 620 2 CYS D 23 SG 101.8 REMARK 620 3 CYS D 26 SG 99.6 113.0 REMARK 620 4 CYS D 59 SG 114.4 118.7 107.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 53 ND1 REMARK 620 2 CYS A 73 SG 113.9 REMARK 620 3 CYS A 76 SG 105.7 116.4 REMARK 620 4 CYS B 51 SG 107.2 103.1 110.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 53 ND1 REMARK 620 2 CYS C 51 SG 113.3 REMARK 620 3 CYS D 73 SG 106.5 105.6 REMARK 620 4 CYS D 76 SG 113.8 108.7 108.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 58 ND1 REMARK 620 2 CYS D 44 SG 109.9 REMARK 620 3 CYS D 34 SG 114.8 108.0 REMARK 620 4 CYS D 37 SG 97.2 112.2 114.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 53 ND1 REMARK 620 2 CYS D 51 SG 104.3 REMARK 620 3 CYS C 76 SG 111.6 112.8 REMARK 620 4 CYS C 73 SG 109.8 105.3 112.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 56 ND1 REMARK 620 2 CYS C 59 SG 119.5 REMARK 620 3 CYS C 23 SG 101.1 116.6 REMARK 620 4 CYS C 26 SG 98.7 108.3 111.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 103 DBREF 4R2Y A 17 84 UNP Q9NYG5 APC11_HUMAN 17 84 DBREF 4R2Y B 17 84 UNP Q9NYG5 APC11_HUMAN 17 84 DBREF 4R2Y C 17 84 UNP Q9NYG5 APC11_HUMAN 17 84 DBREF 4R2Y D 17 84 UNP Q9NYG5 APC11_HUMAN 17 84 SEQRES 1 A 68 VAL ALA ASN ASP GLU ASN CYS GLY ILE CYS ARG MET ALA SEQRES 2 A 68 PHE ASN GLY CYS CYS PRO ASP CYS LYS VAL PRO GLY ASP SEQRES 3 A 68 ASP CYS PRO LEU VAL TRP GLY GLN CYS SER HIS CYS PHE SEQRES 4 A 68 HIS MET HIS CYS ILE LEU LYS TRP LEU HIS ALA GLN GLN SEQRES 5 A 68 VAL GLN GLN HIS CYS PRO MET CYS ARG GLN GLU TRP LYS SEQRES 6 A 68 PHE LYS GLU SEQRES 1 B 68 VAL ALA ASN ASP GLU ASN CYS GLY ILE CYS ARG MET ALA SEQRES 2 B 68 PHE ASN GLY CYS CYS PRO ASP CYS LYS VAL PRO GLY ASP SEQRES 3 B 68 ASP CYS PRO LEU VAL TRP GLY GLN CYS SER HIS CYS PHE SEQRES 4 B 68 HIS MET HIS CYS ILE LEU LYS TRP LEU HIS ALA GLN GLN SEQRES 5 B 68 VAL GLN GLN HIS CYS PRO MET CYS ARG GLN GLU TRP LYS SEQRES 6 B 68 PHE LYS GLU SEQRES 1 C 68 VAL ALA ASN ASP GLU ASN CYS GLY ILE CYS ARG MET ALA SEQRES 2 C 68 PHE ASN GLY CYS CYS PRO ASP CYS LYS VAL PRO GLY ASP SEQRES 3 C 68 ASP CYS PRO LEU VAL TRP GLY GLN CYS SER HIS CYS PHE SEQRES 4 C 68 HIS MET HIS CYS ILE LEU LYS TRP LEU HIS ALA GLN GLN SEQRES 5 C 68 VAL GLN GLN HIS CYS PRO MET CYS ARG GLN GLU TRP LYS SEQRES 6 C 68 PHE LYS GLU SEQRES 1 D 68 VAL ALA ASN ASP GLU ASN CYS GLY ILE CYS ARG MET ALA SEQRES 2 D 68 PHE ASN GLY CYS CYS PRO ASP CYS LYS VAL PRO GLY ASP SEQRES 3 D 68 ASP CYS PRO LEU VAL TRP GLY GLN CYS SER HIS CYS PHE SEQRES 4 D 68 HIS MET HIS CYS ILE LEU LYS TRP LEU HIS ALA GLN GLN SEQRES 5 D 68 VAL GLN GLN HIS CYS PRO MET CYS ARG GLN GLU TRP LYS SEQRES 6 D 68 PHE LYS GLU HET ZN A 101 1 HET ZN A 102 1 HET ZN A 103 1 HET ZN B 101 1 HET ZN B 102 1 HET ZN B 103 1 HET ZN C 101 1 HET ZN C 102 1 HET ZN C 103 1 HET ZN D 101 1 HET ZN D 102 1 HET ZN D 103 1 HETNAM ZN ZINC ION FORMUL 5 ZN 12(ZN 2+) FORMUL 17 HOH *208(H2 O) HELIX 1 1 CYS A 34 LYS A 38 5 5 HELIX 2 2 MET A 57 GLN A 68 1 12 HELIX 3 3 MET B 57 GLN B 68 1 12 HELIX 4 4 MET C 57 GLN C 68 1 12 HELIX 5 5 MET D 57 GLN D 68 1 12 SHEET 1 A 2 LEU A 46 TRP A 48 0 SHEET 2 A 2 CYS A 54 HIS A 56 -1 O PHE A 55 N VAL A 47 SHEET 1 B 2 LEU B 46 TRP B 48 0 SHEET 2 B 2 CYS B 54 HIS B 56 -1 O PHE B 55 N VAL B 47 SHEET 1 C 2 LEU C 46 TRP C 48 0 SHEET 2 C 2 CYS C 54 HIS C 56 -1 O PHE C 55 N VAL C 47 SHEET 1 D 2 LEU D 46 TRP D 48 0 SHEET 2 D 2 CYS D 54 HIS D 56 -1 O PHE D 55 N VAL D 47 LINK ND1 HIS A 53 ZN ZN A 102 1555 1555 1.96 LINK ND1 HIS B 58 ZN ZN B 103 1555 1555 2.07 LINK ND1 HIS A 56 ZN ZN A 101 1555 1555 2.09 LINK ND1 HIS A 58 ZN ZN A 103 1555 1555 2.11 LINK ND1 HIS C 58 ZN ZN C 102 1555 1555 2.11 LINK ND1 HIS B 56 ZN ZN B 101 1555 1555 2.13 LINK ND1 HIS D 56 ZN ZN D 102 1555 1555 2.14 LINK ND1 HIS B 53 ZN ZN B 102 1555 1555 2.15 LINK ND1 HIS C 53 ZN ZN C 103 1555 1555 2.15 LINK ND1 HIS D 58 ZN ZN D 101 1555 1555 2.15 LINK ND1 HIS D 53 ZN ZN D 103 1555 1555 2.20 LINK ND1 HIS C 56 ZN ZN C 101 1555 1555 2.23 LINK SG CYS D 23 ZN ZN D 102 1555 1555 2.27 LINK SG CYS D 44 ZN ZN D 101 1555 1555 2.27 LINK SG CYS D 51 ZN ZN D 103 1555 1555 2.28 LINK SG CYS C 59 ZN ZN C 101 1555 1555 2.28 LINK SG CYS A 73 ZN ZN B 102 1555 1555 2.29 LINK SG CYS C 34 ZN ZN C 102 1555 1555 2.30 LINK SG CYS D 26 ZN ZN D 102 1555 1555 2.30 LINK SG CYS A 59 ZN ZN A 101 1555 1555 2.30 LINK SG CYS C 76 ZN ZN D 103 1555 1555 2.30 LINK SG CYS B 37 ZN ZN B 103 1555 1555 2.30 LINK SG CYS D 34 ZN ZN D 101 1555 1555 2.30 LINK SG CYS D 37 ZN ZN D 101 1555 1555 2.31 LINK SG CYS C 51 ZN ZN C 103 1555 1555 2.31 LINK SG CYS A 34 ZN ZN A 103 1555 1555 2.31 LINK SG CYS B 59 ZN ZN B 101 1555 1555 2.31 LINK SG CYS A 76 ZN ZN B 102 1555 1555 2.33 LINK SG CYS A 23 ZN ZN A 101 1555 1555 2.33 LINK SG CYS A 51 ZN ZN A 102 1555 1555 2.33 LINK SG CYS B 26 ZN ZN B 101 1555 1555 2.35 LINK SG CYS C 23 ZN ZN C 101 1555 1555 2.35 LINK SG CYS C 44 ZN ZN C 102 1555 1555 2.35 LINK SG CYS A 44 ZN ZN A 103 1555 1555 2.35 LINK SG CYS A 37 ZN ZN A 103 1555 1555 2.36 LINK SG CYS D 59 ZN ZN D 102 1555 1555 2.36 LINK SG CYS B 73 ZN ZN A 102 1555 1555 2.36 LINK SG CYS C 26 ZN ZN C 101 1555 1555 2.37 LINK SG CYS B 44 ZN ZN B 103 1555 1555 2.37 LINK SG CYS D 73 ZN ZN C 103 1555 1555 2.37 LINK SG CYS B 51 ZN ZN B 102 1555 1555 2.38 LINK SG CYS C 37 ZN ZN C 102 1555 1555 2.38 LINK SG CYS B 23 ZN ZN B 101 1555 1555 2.38 LINK SG CYS B 34 ZN ZN B 103 1555 1555 2.38 LINK SG CYS A 26 ZN ZN A 101 1555 1555 2.39 LINK SG CYS C 73 ZN ZN D 103 1555 1555 2.40 LINK SG CYS B 76 ZN ZN A 102 1555 1555 2.42 LINK SG CYS D 76 ZN ZN C 103 1555 1555 2.42 SITE 1 AC1 4 CYS A 23 CYS A 26 HIS A 56 CYS A 59 SITE 1 AC2 4 CYS A 51 HIS A 53 CYS B 73 CYS B 76 SITE 1 AC3 4 CYS A 34 CYS A 37 CYS A 44 HIS A 58 SITE 1 AC4 4 CYS B 23 CYS B 26 HIS B 56 CYS B 59 SITE 1 AC5 4 CYS A 73 CYS A 76 CYS B 51 HIS B 53 SITE 1 AC6 4 CYS B 34 CYS B 37 CYS B 44 HIS B 58 SITE 1 AC7 4 CYS C 23 CYS C 26 HIS C 56 CYS C 59 SITE 1 AC8 4 CYS C 34 CYS C 37 CYS C 44 HIS C 58 SITE 1 AC9 4 CYS C 51 HIS C 53 CYS D 73 CYS D 76 SITE 1 BC1 4 CYS D 34 CYS D 37 CYS D 44 HIS D 58 SITE 1 BC2 4 CYS D 23 CYS D 26 HIS D 56 CYS D 59 SITE 1 BC3 4 CYS C 73 CYS C 76 CYS D 51 HIS D 53 CRYST1 52.446 39.876 65.038 90.00 108.49 90.00 P 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019067 0.000000 0.006375 0.00000 SCALE2 0.000000 0.025078 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016212 0.00000 MASTER 485 0 12 5 8 0 12 6 0 0 0 24 END