HEADER TRANSCRIPTION 30-JUL-14 4R06 TITLE CRYSTAL STRUCTURE OF SR2067 BOUND TO PPARGAMMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 233-505; COMPND 5 SYNONYM: PPAR-GAMMA, NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1C3, PPARG, PPARG_HUMAN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS NUCLEAR RECEPTOR, LIGAND BINDING PROTEIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR L.MARREWIJK,T.KAMENECKA,P.R.GRIFFIN,J.B.BRUNING REVDAT 1 27-JAN-16 4R06 0 JRNL AUTH L.M.VAN MARREWIJK,S.W.POLYAK,M.HIJNEN,D.KURUVILLA,M.R.CHANG, JRNL AUTH 2 Y.SHIN,T.M.KAMENECKA,P.R.GRIFFIN,J.B.BRUNING JRNL TITL SR2067 REVEALS A UNIQUE KINETIC AND STRUCTURAL SIGNATURE FOR JRNL TITL 2 PPAR GAMMA PARTIAL AGONISM. JRNL REF ACS CHEM.BIOL. V. 11 273 2016 JRNL REFN ISSN 1554-8929 JRNL PMID 26579553 JRNL DOI 10.1021/ACSCHEMBIO.5B00580 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 30388 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9800 - 4.9345 0.86 2517 170 0.1756 0.1976 REMARK 3 2 4.9345 - 3.9177 0.90 2570 141 0.1410 0.1954 REMARK 3 3 3.9177 - 3.4228 0.93 2706 127 0.1524 0.2008 REMARK 3 4 3.4228 - 3.1100 0.92 2587 130 0.1816 0.2652 REMARK 3 5 3.1100 - 2.8871 0.89 2579 127 0.2078 0.3162 REMARK 3 6 2.8871 - 2.7170 0.95 2712 129 0.2113 0.2851 REMARK 3 7 2.7170 - 2.5809 0.95 2684 150 0.2365 0.3297 REMARK 3 8 2.5809 - 2.4686 0.86 2476 131 0.2535 0.3289 REMARK 3 9 2.4686 - 2.3736 0.94 2646 157 0.2690 0.3205 REMARK 3 10 2.3736 - 2.2917 0.95 2712 141 0.2886 0.3759 REMARK 3 11 2.2917 - 2.2200 0.95 2665 131 0.2943 0.3335 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4206 REMARK 3 ANGLE : 1.127 5694 REMARK 3 CHIRALITY : 0.077 662 REMARK 3 PLANARITY : 0.005 718 REMARK 3 DIHEDRAL : 17.016 1605 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resid 206 through 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1244 16.2840 15.0081 REMARK 3 T TENSOR REMARK 3 T11: 0.3215 T22: 0.4709 REMARK 3 T33: 0.3995 T12: 0.0523 REMARK 3 T13: 0.0370 T23: 0.0807 REMARK 3 L TENSOR REMARK 3 L11: 0.1514 L22: 0.2103 REMARK 3 L33: 0.3935 L12: -0.1012 REMARK 3 L13: 0.1177 L23: 0.2300 REMARK 3 S TENSOR REMARK 3 S11: -0.1456 S12: 0.0124 S13: -0.0328 REMARK 3 S21: -0.0679 S22: 0.2612 S23: 0.2261 REMARK 3 S31: -0.2194 S32: -0.3896 S33: -0.0070 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resid 238 through 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8898 32.0212 -3.3064 REMARK 3 T TENSOR REMARK 3 T11: 0.5642 T22: 0.5789 REMARK 3 T33: 0.1261 T12: -0.2262 REMARK 3 T13: 0.0246 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 2.5741 L22: 1.5098 REMARK 3 L33: 0.0073 L12: -0.9144 REMARK 3 L13: -0.1279 L23: 0.0578 REMARK 3 S TENSOR REMARK 3 S11: 0.2660 S12: 0.8140 S13: -0.4851 REMARK 3 S21: -0.0353 S22: -0.1439 S23: 0.2636 REMARK 3 S31: -0.6864 S32: 0.2907 S33: 0.1414 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resid 277 through 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8196 27.4338 16.6983 REMARK 3 T TENSOR REMARK 3 T11: 0.3807 T22: 0.5521 REMARK 3 T33: 0.3180 T12: 0.0438 REMARK 3 T13: -0.0596 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 0.2084 L22: 0.6296 REMARK 3 L33: 0.7465 L12: 0.4599 REMARK 3 L13: -0.1027 L23: -0.1350 REMARK 3 S TENSOR REMARK 3 S11: -0.2425 S12: 0.0578 S13: -0.1813 REMARK 3 S21: 0.0430 S22: 0.1125 S23: -0.0411 REMARK 3 S31: -0.2950 S32: 0.3064 S33: -0.0022 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resid 365 through 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8784 16.2544 10.8104 REMARK 3 T TENSOR REMARK 3 T11: 0.3647 T22: 0.6884 REMARK 3 T33: 0.5145 T12: 0.1188 REMARK 3 T13: -0.0004 T23: -0.0451 REMARK 3 L TENSOR REMARK 3 L11: 0.0254 L22: 0.0534 REMARK 3 L33: 0.0453 L12: 0.0003 REMARK 3 L13: 0.0204 L23: -0.0446 REMARK 3 S TENSOR REMARK 3 S11: -0.3314 S12: -0.1515 S13: -0.3645 REMARK 3 S21: -0.1627 S22: 0.1020 S23: -0.3109 REMARK 3 S31: 0.3443 S32: 1.1997 S33: -0.0007 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resid 378 through 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9170 10.7921 24.2822 REMARK 3 T TENSOR REMARK 3 T11: 0.3326 T22: 0.3087 REMARK 3 T33: 0.4035 T12: 0.3084 REMARK 3 T13: 0.0106 T23: 0.1840 REMARK 3 L TENSOR REMARK 3 L11: 1.1642 L22: 1.3615 REMARK 3 L33: 0.7352 L12: 0.9036 REMARK 3 L13: 0.5544 L23: 0.1758 REMARK 3 S TENSOR REMARK 3 S11: -0.4175 S12: -0.2466 S13: -0.5600 REMARK 3 S21: 0.1752 S22: 0.5504 S23: -0.2856 REMARK 3 S31: 0.3296 S32: 0.1947 S33: 0.0642 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'A' and (resid 431 through 459 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8526 19.1741 21.4570 REMARK 3 T TENSOR REMARK 3 T11: 0.5239 T22: 0.5447 REMARK 3 T33: 0.6018 T12: 0.3147 REMARK 3 T13: -0.1211 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.2143 L22: 0.4819 REMARK 3 L33: 0.0920 L12: 0.0712 REMARK 3 L13: 0.0814 L23: 0.1213 REMARK 3 S TENSOR REMARK 3 S11: -0.1193 S12: 0.2473 S13: -0.1528 REMARK 3 S21: 0.3462 S22: 0.4938 S23: -0.4406 REMARK 3 S31: 0.1323 S32: 0.7887 S33: 0.0955 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'A' and (resid 460 through 475 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9207 36.9225 24.7699 REMARK 3 T TENSOR REMARK 3 T11: 0.7321 T22: 0.6707 REMARK 3 T33: 0.5555 T12: 0.0197 REMARK 3 T13: -0.0203 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.0704 L22: 0.1144 REMARK 3 L33: -0.0179 L12: -0.0383 REMARK 3 L13: 0.0065 L23: 0.0131 REMARK 3 S TENSOR REMARK 3 S11: 0.4367 S12: -0.5750 S13: 0.7280 REMARK 3 S21: 0.8232 S22: -0.3036 S23: -0.0547 REMARK 3 S31: -0.0773 S32: 0.1744 S33: 0.0010 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'B' and (resid 207 through 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0605 -12.4211 33.4221 REMARK 3 T TENSOR REMARK 3 T11: 0.5503 T22: 0.3783 REMARK 3 T33: 0.4821 T12: 0.0614 REMARK 3 T13: 0.0222 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 0.3026 L22: 0.0971 REMARK 3 L33: 0.1916 L12: 0.0227 REMARK 3 L13: -0.0182 L23: -0.1754 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: -0.2327 S13: -0.4647 REMARK 3 S21: 0.0506 S22: -0.0031 S23: -0.2157 REMARK 3 S31: 0.2579 S32: -0.2546 S33: -0.0003 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain 'B' and (resid 239 through 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.5799 0.1758 52.0387 REMARK 3 T TENSOR REMARK 3 T11: 0.6951 T22: 1.0809 REMARK 3 T33: 0.4679 T12: -0.0015 REMARK 3 T13: 0.0705 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 0.1732 L22: 0.1852 REMARK 3 L33: 0.0581 L12: 0.2199 REMARK 3 L13: -0.0868 L23: -0.0051 REMARK 3 S TENSOR REMARK 3 S11: -0.0794 S12: -0.5366 S13: -0.2090 REMARK 3 S21: -0.0725 S22: -0.0901 S23: -0.1120 REMARK 3 S31: -0.0613 S32: 0.3995 S33: -0.1358 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: chain 'B' and (resid 278 through 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6859 -1.9463 34.3449 REMARK 3 T TENSOR REMARK 3 T11: 0.4063 T22: 0.4998 REMARK 3 T33: 0.3956 T12: 0.1127 REMARK 3 T13: 0.0309 T23: 0.0730 REMARK 3 L TENSOR REMARK 3 L11: 0.0957 L22: 0.1153 REMARK 3 L33: 0.0811 L12: -0.1147 REMARK 3 L13: -0.0258 L23: 0.0046 REMARK 3 S TENSOR REMARK 3 S11: 0.3010 S12: -0.2522 S13: -0.3608 REMARK 3 S21: 0.3567 S22: -0.2859 S23: 0.0314 REMARK 3 S31: 0.3940 S32: 0.0520 S33: 0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: chain 'B' and (resid 303 through 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0523 -2.6852 22.9190 REMARK 3 T TENSOR REMARK 3 T11: 0.4092 T22: 0.2980 REMARK 3 T33: 0.3905 T12: 0.1411 REMARK 3 T13: 0.0291 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.4136 L22: 0.2223 REMARK 3 L33: -0.0064 L12: 0.2212 REMARK 3 L13: -0.0529 L23: -0.0147 REMARK 3 S TENSOR REMARK 3 S11: 0.0866 S12: 0.1571 S13: -0.0821 REMARK 3 S21: 0.0202 S22: -0.0313 S23: -0.1116 REMARK 3 S31: 0.0017 S32: -0.2259 S33: 0.0002 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: chain 'B' and (resid 334 through 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5777 2.3481 48.2369 REMARK 3 T TENSOR REMARK 3 T11: 0.7644 T22: 0.6802 REMARK 3 T33: 0.5203 T12: 0.1287 REMARK 3 T13: 0.0192 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.0574 L22: 0.0423 REMARK 3 L33: 0.0841 L12: -0.0343 REMARK 3 L13: 0.0809 L23: -0.0247 REMARK 3 S TENSOR REMARK 3 S11: 0.4200 S12: -0.8506 S13: -0.1341 REMARK 3 S21: 0.2985 S22: -0.4464 S23: 0.1328 REMARK 3 S31: -0.0610 S32: 0.0437 S33: -0.0001 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: chain 'B' and (resid 354 through 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0432 15.2661 43.6867 REMARK 3 T TENSOR REMARK 3 T11: 1.1167 T22: 0.7010 REMARK 3 T33: 0.5903 T12: -0.2375 REMARK 3 T13: 0.0844 T23: -0.0718 REMARK 3 L TENSOR REMARK 3 L11: 0.0320 L22: 0.0249 REMARK 3 L33: 0.0484 L12: 0.0010 REMARK 3 L13: -0.0137 L23: 0.0423 REMARK 3 S TENSOR REMARK 3 S11: -0.0620 S12: -0.0748 S13: 0.0153 REMARK 3 S21: -0.1553 S22: 0.3103 S23: -0.1772 REMARK 3 S31: -0.5085 S32: 0.1508 S33: -0.0005 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: chain 'B' and (resid 365 through 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3215 7.5993 39.8969 REMARK 3 T TENSOR REMARK 3 T11: 0.6314 T22: 0.5079 REMARK 3 T33: 0.5205 T12: 0.0730 REMARK 3 T13: 0.0996 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.0182 L22: 0.0198 REMARK 3 L33: 0.0249 L12: 0.0276 REMARK 3 L13: -0.0105 L23: 0.0088 REMARK 3 S TENSOR REMARK 3 S11: 0.2128 S12: -0.2285 S13: 0.0898 REMARK 3 S21: -0.1439 S22: -0.2535 S23: 0.1922 REMARK 3 S31: -0.8431 S32: -0.2337 S33: 0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: chain 'B' and (resid 378 through 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3246 -4.0850 24.0474 REMARK 3 T TENSOR REMARK 3 T11: 0.3425 T22: 0.3366 REMARK 3 T33: 0.4168 T12: 0.1246 REMARK 3 T13: -0.0119 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.7109 L22: 0.4430 REMARK 3 L33: 0.3124 L12: -0.2675 REMARK 3 L13: 0.3194 L23: -0.4248 REMARK 3 S TENSOR REMARK 3 S11: 0.2500 S12: 0.1672 S13: -0.1226 REMARK 3 S21: -0.1091 S22: -0.0433 S23: 0.2369 REMARK 3 S31: -0.2860 S32: -0.3252 S33: -0.0001 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: chain 'B' and (resid 431 through 458 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8561 9.6016 29.7703 REMARK 3 T TENSOR REMARK 3 T11: 0.4238 T22: 0.3665 REMARK 3 T33: 0.5290 T12: 0.0207 REMARK 3 T13: 0.0421 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.0083 L22: 0.0277 REMARK 3 L33: 0.2841 L12: 0.0044 REMARK 3 L13: 0.0627 L23: -0.1961 REMARK 3 S TENSOR REMARK 3 S11: 0.2791 S12: -0.1148 S13: 0.2246 REMARK 3 S21: -0.0442 S22: 0.0579 S23: 0.1656 REMARK 3 S31: -0.9558 S32: 0.0684 S33: 0.0111 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: chain 'B' and (resid 459 through 475 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.0204 5.8218 31.3848 REMARK 3 T TENSOR REMARK 3 T11: 0.8716 T22: 0.5812 REMARK 3 T33: 0.8496 T12: 0.1261 REMARK 3 T13: 0.0418 T23: -0.1036 REMARK 3 L TENSOR REMARK 3 L11: 0.0178 L22: 0.0057 REMARK 3 L33: 0.0325 L12: -0.0135 REMARK 3 L13: 0.0020 L23: 0.0027 REMARK 3 S TENSOR REMARK 3 S11: -0.1664 S12: 0.0963 S13: -0.2239 REMARK 3 S21: -0.2477 S22: -0.5372 S23: -0.0240 REMARK 3 S31: 0.2438 S32: 0.3854 S33: -0.0012 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-14. REMARK 100 THE RCSB ID CODE IS RCSB086733. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL, ASYMMETRIC REMARK 200 CUT 4.965 DEGS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30423 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 39.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.01100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2Q6R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN LIGAND COMPLEX AT 10MG/ML IN REMARK 280 20MM TRIS 8.0, 10MM NACL, 1MM TCEP MIXED WITH EQUAL VOLUME OF REMARK 280 WELL SOLUTION OF 2M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.39500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.39500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 205 REMARK 465 GLY A 239 REMARK 465 LYS A 240 REMARK 465 ASP A 260 REMARK 465 LYS A 261 REMARK 465 ILE A 262 REMARK 465 LYS A 263 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLN A 273 REMARK 465 SER A 274 REMARK 465 LYS A 275 REMARK 465 LEU A 476 REMARK 465 TYR A 477 REMARK 465 ASN B 205 REMARK 465 PRO B 206 REMARK 465 THR B 241 REMARK 465 THR B 242 REMARK 465 ASP B 243 REMARK 465 LYS B 244 REMARK 465 PRO B 269 REMARK 465 LEU B 270 REMARK 465 GLN B 271 REMARK 465 GLU B 272 REMARK 465 GLN B 273 REMARK 465 SER B 274 REMARK 465 LYS B 275 REMARK 465 ASP B 462 REMARK 465 MET B 463 REMARK 465 SER B 464 REMARK 465 LEU B 465 REMARK 465 HIS B 466 REMARK 465 LEU B 476 REMARK 465 TYR B 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 206 CG CD REMARK 470 GLU A 259 CG CD OE1 OE2 REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 LYS B 240 CG CD CE NZ REMARK 470 ASP B 260 CG OD1 OD2 REMARK 470 LYS B 261 CG CD CE NZ REMARK 470 LYS B 263 CG CD CE NZ REMARK 470 GLU B 276 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 474 106.56 -58.44 REMARK 500 LYS B 261 -79.23 -100.38 REMARK 500 ASP B 310 130.40 -39.11 REMARK 500 HIS B 425 58.51 -148.40 REMARK 500 GLU B 460 86.14 -68.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3E7 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 DBREF 4R06 A 205 477 UNP P37231 PPARG_HUMAN 233 505 DBREF 4R06 B 205 477 UNP P37231 PPARG_HUMAN 233 505 SEQRES 1 A 273 ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA LYS HIS SEQRES 2 A 273 LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU THR LYS SEQRES 3 A 273 ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR THR ASP SEQRES 4 A 273 LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER LEU MET SEQRES 5 A 273 MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE THR PRO SEQRES 6 A 273 LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG ILE PHE SEQRES 7 A 273 GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL GLN GLU SEQRES 8 A 273 ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE VAL ASN SEQRES 9 A 273 LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS TYR GLY SEQRES 10 A 273 VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER LEU MET SEQRES 11 A 273 ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN GLY PHE SEQRES 12 A 273 MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS PRO PHE SEQRES 13 A 273 GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA VAL LYS SEQRES 14 A 273 PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU ALA ILE SEQRES 15 A 273 PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG PRO GLY SEQRES 16 A 273 LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP ASN SEQRES 17 A 273 LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN HIS SEQRES 18 A 273 PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU GLN LYS SEQRES 19 A 273 MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS VAL GLN SEQRES 20 A 273 LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP MET SER SEQRES 21 A 273 LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU TYR SEQRES 1 B 273 ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA LYS HIS SEQRES 2 B 273 LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU THR LYS SEQRES 3 B 273 ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR THR ASP SEQRES 4 B 273 LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER LEU MET SEQRES 5 B 273 MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE THR PRO SEQRES 6 B 273 LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG ILE PHE SEQRES 7 B 273 GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL GLN GLU SEQRES 8 B 273 ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE VAL ASN SEQRES 9 B 273 LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS TYR GLY SEQRES 10 B 273 VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER LEU MET SEQRES 11 B 273 ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN GLY PHE SEQRES 12 B 273 MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS PRO PHE SEQRES 13 B 273 GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA VAL LYS SEQRES 14 B 273 PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU ALA ILE SEQRES 15 B 273 PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG PRO GLY SEQRES 16 B 273 LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP ASN SEQRES 17 B 273 LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN HIS SEQRES 18 B 273 PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU GLN LYS SEQRES 19 B 273 MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS VAL GLN SEQRES 20 B 273 LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP MET SER SEQRES 21 B 273 LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU TYR HET 3E7 A 501 34 HET SO4 A 502 5 HETNAM 3E7 1-(NAPHTHALEN-1-YLSULFONYL)-N-[(1S)-1-PHENYLPROPYL]-1H- HETNAM 2 3E7 INDOLE-5-CARBOXAMIDE HETNAM SO4 SULFATE ION FORMUL 3 3E7 C28 H24 N2 O3 S FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *178(H2 O) HELIX 1 1 GLU A 207 PHE A 226 1 20 HELIX 2 2 THR A 229 THR A 238 1 10 HELIX 3 3 ASP A 251 GLU A 259 1 9 HELIX 4 4 VAL A 277 LYS A 301 1 25 HELIX 5 5 GLY A 305 LEU A 309 5 5 HELIX 6 6 ASP A 310 SER A 332 1 23 HELIX 7 7 SER A 342 GLY A 344 5 3 HELIX 8 8 ARG A 350 SER A 355 1 6 HELIX 9 9 PRO A 359 PHE A 363 5 5 HELIX 10 10 MET A 364 ALA A 376 1 13 HELIX 11 11 ASP A 380 LEU A 393 1 14 HELIX 12 12 ASN A 402 HIS A 425 1 24 HELIX 13 13 GLN A 430 LYS A 438 1 9 HELIX 14 14 LYS A 438 GLU A 460 1 23 HELIX 15 15 HIS A 466 LYS A 474 1 9 HELIX 16 16 ALA B 209 PHE B 226 1 18 HELIX 17 17 THR B 229 GLY B 239 1 11 HELIX 18 18 ASP B 251 ASP B 260 1 10 HELIX 19 19 VAL B 277 ILE B 303 1 27 HELIX 20 20 ASP B 310 ALA B 331 1 22 HELIX 21 21 ARG B 350 LYS B 354 1 5 HELIX 22 22 PRO B 359 PHE B 363 5 5 HELIX 23 23 MET B 364 ALA B 376 1 13 HELIX 24 24 ASP B 380 LEU B 393 1 14 HELIX 25 25 ASN B 402 HIS B 425 1 24 HELIX 26 26 GLN B 430 LYS B 457 1 28 HELIX 27 27 LEU B 468 TYR B 473 1 6 SHEET 1 A 4 PHE A 247 ILE A 249 0 SHEET 2 A 4 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 A 4 GLY A 338 ILE A 341 -1 N VAL A 339 O MET A 348 SHEET 4 A 4 MET A 334 ASN A 335 -1 N ASN A 335 O GLY A 338 SHEET 1 B 4 PHE B 247 ILE B 249 0 SHEET 2 B 4 GLY B 346 THR B 349 1 O PHE B 347 N ILE B 249 SHEET 3 B 4 GLY B 338 ILE B 341 -1 N VAL B 339 O MET B 348 SHEET 4 B 4 MET B 334 ASN B 335 -1 N ASN B 335 O GLY B 338 CISPEP 1 LYS A 358 PRO A 359 0 -3.32 CISPEP 2 LYS B 358 PRO B 359 0 4.33 SITE 1 AC1 18 ILE A 281 PHE A 282 GLY A 284 CYS A 285 SITE 2 AC1 18 SER A 289 HIS A 323 ILE A 326 TYR A 327 SITE 3 AC1 18 LEU A 330 VAL A 339 LEU A 340 ILE A 341 SITE 4 AC1 18 MET A 364 HIS A 449 LEU A 453 TYR A 473 SITE 5 AC1 18 SO4 A 502 HOH A 667 SITE 1 AC2 8 ARG A 288 ILE A 326 MET A 329 LEU A 330 SITE 2 AC2 8 LEU A 333 3E7 A 501 HOH A 605 HOH A 622 CRYST1 92.790 62.600 118.570 90.00 101.93 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010777 0.000000 0.002277 0.00000 SCALE2 0.000000 0.015974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008620 0.00000 MASTER 550 0 2 27 8 0 7 6 0 0 0 42 END