HEADER PROTEIN BINDING 28-JUL-14 4QZU TITLE CRYSTAL STRUCTURE OF WILD TYPE HUMAN CELLULAR RETINOL BINDING PROTEIN TITLE 2 II (HCRBPII) BOUND TO RETINOL AT 11 KEV BEAM ENERGY COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOL-BINDING PROTEIN 2; COMPND 3 CHAIN: A, C, B, D; COMPND 4 SYNONYM: CELLULAR RETINOL-BINDING PROTEIN II, CRBP-II; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBP2, CRBP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS RETINOL, HUMAN CELLULAR RETINOL BINDING PROTEIN II, INTRACELLULAR KEYWDS 2 LIPID BINDING PROTEIN, X-RAY FLUX, X-RAY DAMAGE, RETINAL, RETINOID KEYWDS 3 CHAPERONES, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Z.ASSAR,J.H.GEIGER REVDAT 3 31-DEC-14 4QZU 1 JRNL REVDAT 2 24-DEC-14 4QZU 1 JRNL REVDAT 1 10-DEC-14 4QZU 0 JRNL AUTH Z.NOSSONI,Z.ASSAR,I.YAPICI,M.NOSRATI,W.WANG,T.BERBASOVA, JRNL AUTH 2 C.VASILEIOU,B.BORHAN,J.GEIGER JRNL TITL STRUCTURES OF HOLO WILD-TYPE HUMAN CELLULAR RETINOL-BINDING JRNL TITL 2 PROTEIN II (HCRBPII) BOUND TO RETINOL AND RETINAL. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 3226 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25478840 JRNL DOI 10.1107/S1399004714023839 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 72755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6699 - 4.4288 0.98 2739 154 0.1555 0.1978 REMARK 3 2 4.4288 - 3.5164 0.99 2735 181 0.1384 0.1761 REMARK 3 3 3.5164 - 3.0722 0.98 2744 131 0.1567 0.1867 REMARK 3 4 3.0722 - 2.7914 0.98 2747 118 0.1754 0.2235 REMARK 3 5 2.7914 - 2.5914 0.98 2711 154 0.1728 0.2216 REMARK 3 6 2.5914 - 2.4387 0.97 2706 150 0.1748 0.2068 REMARK 3 7 2.4387 - 2.3166 0.97 2720 154 0.1717 0.2207 REMARK 3 8 2.3166 - 2.2157 0.97 2684 148 0.1672 0.2493 REMARK 3 9 2.2157 - 2.1305 0.96 2683 139 0.1617 0.2376 REMARK 3 10 2.1305 - 2.0569 0.96 2675 155 0.1606 0.2307 REMARK 3 11 2.0569 - 1.9926 0.96 2662 155 0.1556 0.2214 REMARK 3 12 1.9926 - 1.9357 0.96 2667 129 0.1588 0.2156 REMARK 3 13 1.9357 - 1.8847 0.95 2682 145 0.1583 0.2309 REMARK 3 14 1.8847 - 1.8388 0.95 2649 142 0.1566 0.2597 REMARK 3 15 1.8388 - 1.7970 0.95 2612 130 0.1495 0.2321 REMARK 3 16 1.7970 - 1.7587 0.95 2663 154 0.1498 0.2311 REMARK 3 17 1.7587 - 1.7235 0.94 2677 126 0.1534 0.2525 REMARK 3 18 1.7235 - 1.6910 0.94 2664 115 0.1677 0.2760 REMARK 3 19 1.6910 - 1.6608 0.94 2565 147 0.1737 0.2785 REMARK 3 20 1.6608 - 1.6327 0.94 2636 137 0.1764 0.2812 REMARK 3 21 1.6327 - 1.6063 0.93 2601 146 0.1791 0.2590 REMARK 3 22 1.6063 - 1.5816 0.94 2591 146 0.1672 0.2614 REMARK 3 23 1.5816 - 1.5583 0.93 2600 140 0.1741 0.2785 REMARK 3 24 1.5583 - 1.5364 0.93 2586 139 0.1817 0.2921 REMARK 3 25 1.5364 - 1.5156 0.92 2590 122 0.1978 0.2892 REMARK 3 26 1.5156 - 1.4960 0.88 2491 118 0.2151 0.2944 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4553 REMARK 3 ANGLE : 1.066 6118 REMARK 3 CHIRALITY : 0.043 645 REMARK 3 PLANARITY : 0.004 793 REMARK 3 DIHEDRAL : 15.573 1712 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QZU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-14. REMARK 100 THE RCSB ID CODE IS RCSB086721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76284 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.496 REMARK 200 RESOLUTION RANGE LOW (A) : 34.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2RCT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4000 (40%), 0.1M SODIUM REMARK 280 ACETATE PH 4.5, AMMONIUM ACETATE 0.1M, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 119 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU C 118 O HOH C 372 2.02 REMARK 500 O HOH B 302 O HOH B 375 2.11 REMARK 500 OE2 GLU D 100 NH1 ARG D 104 2.13 REMARK 500 O ALA B 28 O HOH B 362 2.13 REMARK 500 OH TYR A 73 NZ LYS D 107 2.17 REMARK 500 O HOH D 328 O HOH D 339 2.18 REMARK 500 O HOH D 301 O HOH D 337 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR C 1 O HOH B 371 1455 2.15 REMARK 500 O HOH A 373 O HOH A 399 1455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 76 -7.75 72.75 REMARK 500 LEU A 77 -112.31 -106.43 REMARK 500 PHE C 57 -61.89 -96.36 REMARK 500 LEU C 77 -107.13 -110.90 REMARK 500 SER B 76 11.88 52.61 REMARK 500 LEU B 77 -96.24 -99.73 REMARK 500 ILE D 32 -163.75 -74.10 REMARK 500 ALA D 33 -131.77 49.81 REMARK 500 VAL D 34 41.12 27.09 REMARK 500 PHE D 57 -88.73 -90.99 REMARK 500 THR D 74 56.70 -67.42 REMARK 500 LYS D 75 19.21 -58.91 REMARK 500 SER D 76 -123.51 -155.11 REMARK 500 LEU D 77 -79.84 55.92 REMARK 500 ASN D 79 112.62 -32.98 REMARK 500 HIS D 81 -81.48 -66.00 REMARK 500 VAL D 82 150.63 64.75 REMARK 500 GLU D 100 -88.89 28.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR D 74 LYS D 75 -135.77 REMARK 500 ASP D 78 ASN D 79 -142.52 REMARK 500 GLY D 99 GLU D 100 143.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 390 DISTANCE = 5.74 ANGSTROMS REMARK 525 HOH A 399 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A 403 DISTANCE = 5.79 ANGSTROMS REMARK 525 HOH A 406 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A 407 DISTANCE = 8.06 ANGSTROMS REMARK 525 HOH A 408 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A 429 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH D 357 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH D 360 DISTANCE = 7.48 ANGSTROMS REMARK 525 HOH D 361 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH D 362 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH D 364 DISTANCE = 7.97 ANGSTROMS REMARK 525 HOH D 365 DISTANCE = 8.54 ANGSTROMS REMARK 525 HOH D 368 DISTANCE = 8.30 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RTL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RTL C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RTL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RCT RELATED DB: PDB REMARK 900 RELATED ID: 2RCQ RELATED DB: PDB REMARK 900 RELATED ID: 4EEJ RELATED DB: PDB REMARK 900 RELATED ID: 4EFG RELATED DB: PDB REMARK 900 RELATED ID: 4EDE RELATED DB: PDB REMARK 900 RELATED ID: 4QZT RELATED DB: PDB DBREF 4QZU A 1 133 UNP P50120 RET2_HUMAN 2 134 DBREF 4QZU C 1 133 UNP P50120 RET2_HUMAN 2 134 DBREF 4QZU B 1 133 UNP P50120 RET2_HUMAN 2 134 DBREF 4QZU D 1 133 UNP P50120 RET2_HUMAN 2 134 SEQRES 1 A 133 THR ARG ASP GLN ASN GLY THR TRP GLU MET GLU SER ASN SEQRES 2 A 133 GLU ASN PHE GLU GLY TYR MET LYS ALA LEU ASP ILE ASP SEQRES 3 A 133 PHE ALA THR ARG LYS ILE ALA VAL ARG LEU THR GLN THR SEQRES 4 A 133 LYS VAL ILE ASP GLN ASP GLY ASP ASN PHE LYS THR LYS SEQRES 5 A 133 THR THR SER THR PHE ARG ASN TYR ASP VAL ASP PHE THR SEQRES 6 A 133 VAL GLY VAL GLU PHE ASP GLU TYR THR LYS SER LEU ASP SEQRES 7 A 133 ASN ARG HIS VAL LYS ALA LEU VAL THR TRP GLU GLY ASP SEQRES 8 A 133 VAL LEU VAL CYS VAL GLN LYS GLY GLU LYS GLU ASN ARG SEQRES 9 A 133 GLY TRP LYS GLN TRP ILE GLU GLY ASP LYS LEU TYR LEU SEQRES 10 A 133 GLU LEU THR CYS GLY ASP GLN VAL CYS ARG GLN VAL PHE SEQRES 11 A 133 LYS LYS LYS SEQRES 1 C 133 THR ARG ASP GLN ASN GLY THR TRP GLU MET GLU SER ASN SEQRES 2 C 133 GLU ASN PHE GLU GLY TYR MET LYS ALA LEU ASP ILE ASP SEQRES 3 C 133 PHE ALA THR ARG LYS ILE ALA VAL ARG LEU THR GLN THR SEQRES 4 C 133 LYS VAL ILE ASP GLN ASP GLY ASP ASN PHE LYS THR LYS SEQRES 5 C 133 THR THR SER THR PHE ARG ASN TYR ASP VAL ASP PHE THR SEQRES 6 C 133 VAL GLY VAL GLU PHE ASP GLU TYR THR LYS SER LEU ASP SEQRES 7 C 133 ASN ARG HIS VAL LYS ALA LEU VAL THR TRP GLU GLY ASP SEQRES 8 C 133 VAL LEU VAL CYS VAL GLN LYS GLY GLU LYS GLU ASN ARG SEQRES 9 C 133 GLY TRP LYS GLN TRP ILE GLU GLY ASP LYS LEU TYR LEU SEQRES 10 C 133 GLU LEU THR CYS GLY ASP GLN VAL CYS ARG GLN VAL PHE SEQRES 11 C 133 LYS LYS LYS SEQRES 1 B 133 THR ARG ASP GLN ASN GLY THR TRP GLU MET GLU SER ASN SEQRES 2 B 133 GLU ASN PHE GLU GLY TYR MET LYS ALA LEU ASP ILE ASP SEQRES 3 B 133 PHE ALA THR ARG LYS ILE ALA VAL ARG LEU THR GLN THR SEQRES 4 B 133 LYS VAL ILE ASP GLN ASP GLY ASP ASN PHE LYS THR LYS SEQRES 5 B 133 THR THR SER THR PHE ARG ASN TYR ASP VAL ASP PHE THR SEQRES 6 B 133 VAL GLY VAL GLU PHE ASP GLU TYR THR LYS SER LEU ASP SEQRES 7 B 133 ASN ARG HIS VAL LYS ALA LEU VAL THR TRP GLU GLY ASP SEQRES 8 B 133 VAL LEU VAL CYS VAL GLN LYS GLY GLU LYS GLU ASN ARG SEQRES 9 B 133 GLY TRP LYS GLN TRP ILE GLU GLY ASP LYS LEU TYR LEU SEQRES 10 B 133 GLU LEU THR CYS GLY ASP GLN VAL CYS ARG GLN VAL PHE SEQRES 11 B 133 LYS LYS LYS SEQRES 1 D 133 THR ARG ASP GLN ASN GLY THR TRP GLU MET GLU SER ASN SEQRES 2 D 133 GLU ASN PHE GLU GLY TYR MET LYS ALA LEU ASP ILE ASP SEQRES 3 D 133 PHE ALA THR ARG LYS ILE ALA VAL ARG LEU THR GLN THR SEQRES 4 D 133 LYS VAL ILE ASP GLN ASP GLY ASP ASN PHE LYS THR LYS SEQRES 5 D 133 THR THR SER THR PHE ARG ASN TYR ASP VAL ASP PHE THR SEQRES 6 D 133 VAL GLY VAL GLU PHE ASP GLU TYR THR LYS SER LEU ASP SEQRES 7 D 133 ASN ARG HIS VAL LYS ALA LEU VAL THR TRP GLU GLY ASP SEQRES 8 D 133 VAL LEU VAL CYS VAL GLN LYS GLY GLU LYS GLU ASN ARG SEQRES 9 D 133 GLY TRP LYS GLN TRP ILE GLU GLY ASP LYS LEU TYR LEU SEQRES 10 D 133 GLU LEU THR CYS GLY ASP GLN VAL CYS ARG GLN VAL PHE SEQRES 11 D 133 LYS LYS LYS HET RTL A 201 23 HET ACT A 202 4 HET GOL A 203 6 HET RTL C 201 21 HET ACT C 202 4 HET RTL B 201 21 HET ACT B 202 4 HET ACT B 203 4 HET ACT D 201 4 HET ACT D 202 4 HETNAM RTL RETINOL HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 RTL 3(C20 H30 O) FORMUL 6 ACT 6(C2 H3 O2 1-) FORMUL 7 GOL C3 H8 O3 FORMUL 15 HOH *395(H2 O) HELIX 1 1 ASN A 15 LEU A 23 1 9 HELIX 2 2 ASP A 26 VAL A 34 1 9 HELIX 3 3 ASN C 15 LEU C 23 1 9 HELIX 4 4 ASP C 26 VAL C 34 1 9 HELIX 5 5 ASN B 15 LEU B 23 1 9 HELIX 6 6 ASP B 26 ARG B 35 1 10 HELIX 7 7 ASN D 15 LEU D 23 1 9 HELIX 8 8 ASP D 26 ILE D 32 1 7 SHEET 1 A10 TYR A 60 THR A 65 0 SHEET 2 A10 ASN A 48 THR A 54 -1 N PHE A 49 O PHE A 64 SHEET 3 A10 THR A 39 ASP A 45 -1 N THR A 39 O THR A 54 SHEET 4 A10 GLY A 6 GLU A 14 -1 N TRP A 8 O LYS A 40 SHEET 5 A10 GLN A 124 LYS A 132 -1 O VAL A 129 N GLU A 11 SHEET 6 A10 LYS A 114 CYS A 121 -1 N LEU A 117 O GLN A 128 SHEET 7 A10 GLY A 105 GLU A 111 -1 N TRP A 109 O TYR A 116 SHEET 8 A10 VAL A 92 LYS A 98 -1 N CYS A 95 O TRP A 106 SHEET 9 A10 HIS A 81 GLU A 89 -1 N THR A 87 O VAL A 94 SHEET 10 A10 PHE A 70 TYR A 73 -1 N PHE A 70 O ALA A 84 SHEET 1 B10 TYR C 60 THR C 65 0 SHEET 2 B10 ASN C 48 THR C 54 -1 N PHE C 49 O PHE C 64 SHEET 3 B10 THR C 39 ASP C 45 -1 N THR C 39 O THR C 54 SHEET 4 B10 GLY C 6 GLU C 14 -1 N TRP C 8 O LYS C 40 SHEET 5 B10 GLN C 124 LYS C 132 -1 O VAL C 129 N GLU C 11 SHEET 6 B10 LYS C 114 CYS C 121 -1 N LEU C 119 O CYS C 126 SHEET 7 B10 GLY C 105 GLU C 111 -1 N TRP C 109 O TYR C 116 SHEET 8 B10 VAL C 92 LYS C 98 -1 N CYS C 95 O TRP C 106 SHEET 9 B10 HIS C 81 GLU C 89 -1 N THR C 87 O VAL C 94 SHEET 10 B10 PHE C 70 TYR C 73 -1 N PHE C 70 O ALA C 84 SHEET 1 C10 TYR B 60 THR B 65 0 SHEET 2 C10 ASN B 48 THR B 54 -1 N PHE B 49 O PHE B 64 SHEET 3 C10 THR B 39 ASP B 45 -1 N VAL B 41 O LYS B 52 SHEET 4 C10 GLY B 6 GLU B 14 -1 N TRP B 8 O LYS B 40 SHEET 5 C10 GLN B 124 LYS B 132 -1 O VAL B 129 N GLU B 11 SHEET 6 C10 LYS B 114 CYS B 121 -1 N LEU B 117 O GLN B 128 SHEET 7 C10 GLY B 105 GLU B 111 -1 N TRP B 109 O TYR B 116 SHEET 8 C10 VAL B 92 LYS B 98 -1 N CYS B 95 O TRP B 106 SHEET 9 C10 HIS B 81 GLU B 89 -1 N THR B 87 O VAL B 94 SHEET 10 C10 PHE B 70 TYR B 73 -1 N PHE B 70 O ALA B 84 SHEET 1 D10 VAL D 62 THR D 65 0 SHEET 2 D10 ASN D 48 THR D 54 -1 N PHE D 49 O PHE D 64 SHEET 3 D10 THR D 39 ASP D 45 -1 N VAL D 41 O LYS D 52 SHEET 4 D10 GLY D 6 GLU D 14 -1 N TRP D 8 O LYS D 40 SHEET 5 D10 GLN D 124 LYS D 132 -1 O VAL D 129 N GLU D 11 SHEET 6 D10 LYS D 114 CYS D 121 -1 N LEU D 119 O CYS D 126 SHEET 7 D10 GLY D 105 GLU D 111 -1 N LYS D 107 O GLU D 118 SHEET 8 D10 VAL D 92 LYS D 98 -1 N CYS D 95 O TRP D 106 SHEET 9 D10 LYS D 83 GLU D 89 -1 N THR D 87 O VAL D 94 SHEET 10 D10 PHE D 70 ASP D 71 -1 N PHE D 70 O ALA D 84 SITE 1 AC1 11 PHE A 16 ILE A 25 GLN A 38 LYS A 40 SITE 2 AC1 11 THR A 51 ARG A 58 LEU A 77 TRP A 106 SITE 3 AC1 11 GLN A 108 GOL A 203 HOH A 351 SITE 1 AC2 3 VAL A 34 HOH A 355 ASN C 13 SITE 1 AC3 9 TYR A 19 TYR A 60 GLU A 72 LEU A 77 SITE 2 AC3 9 GLN A 97 ARG A 104 TRP A 106 RTL A 201 SITE 3 AC3 9 HOH A 314 SITE 1 AC4 8 PHE C 16 GLN C 38 LYS C 40 LEU C 77 SITE 2 AC4 8 TRP C 106 GLN C 108 ACT C 202 HOH C 373 SITE 1 AC5 5 GLU C 72 GLN C 97 TRP C 106 RTL C 201 SITE 2 AC5 5 HOH C 314 SITE 1 AC6 9 PHE B 16 GLN B 38 LYS B 40 TYR B 60 SITE 2 AC6 9 LEU B 77 TRP B 106 GLN B 108 ACT B 202 SITE 3 AC6 9 HOH B 359 SITE 1 AC7 7 TYR B 19 TYR B 60 GLN B 97 ARG B 104 SITE 2 AC7 7 TRP B 106 RTL B 201 HOH B 302 SITE 1 AC8 5 TYR B 116 VAL B 129 HOH B 344 PHE C 57 SITE 2 AC8 5 ARG C 58 SITE 1 AC9 5 ASP B 71 LYS B 83 ASP D 71 HIS D 81 SITE 2 AC9 5 VAL D 82 SITE 1 BC1 7 ASP A 61 LYS A 75 TRP D 109 GLU D 111 SITE 2 BC1 7 HOH D 329 HOH D 332 HOH D 358 CRYST1 36.476 54.139 68.298 107.64 96.94 103.71 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027415 0.006688 0.006003 0.00000 SCALE2 0.000000 0.019013 0.006964 0.00000 SCALE3 0.000000 0.000000 0.015708 0.00000 MASTER 398 0 10 8 40 0 22 6 0 0 0 44 END