HEADER HYDROLASE 14-MAY-14 4QDM TITLE CRYSTAL STRUCTURE OF N-TERMINAL MUTANT (V1L) OF AN ALKALI THERMOSTABLE TITLE 2 GH10 XYLANASE FROM BACILLUS SP. NG-27 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKALINE THERMOSTABLE ENDOXYLANASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 52-405; COMPND 5 EC: 3.2.1.8; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP. NG-27; SOURCE 3 ORGANISM_TAXID: 65673; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS GH10 XYLANASE, (BETA/ALPHA)8-BARREL, GLYCOSYL HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.MAHANTA,A.BHARDWAJ,V.S.REDDY,S.RAMAKUMAR REVDAT 2 21-SEP-16 4QDM 1 JRNL REVDAT 1 20-MAY-15 4QDM 0 JRNL AUTH P.MAHANTA,A.BHARDWAJ,K.KUMAR,V.S.REDDY,S.RAMAKUMAR JRNL TITL STRUCTURAL INSIGHTS INTO N-TERMINAL TO C-TERMINAL JRNL TITL 2 INTERACTIONS AND IMPLICATIONS FOR THERMOSTABILITY OF A JRNL TITL 3 (BETA/ALPHA)8-TRIOSEPHOSPHATE ISOMERASE BARREL ENZYME JRNL REF FEBS J. V. 282 3543 2015 JRNL REFN ISSN 1742-464X JRNL PMID 26102498 JRNL DOI 10.1111/FEBS.13355 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 52480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2682 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3493 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.1480 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.1920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5792 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 434 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.008 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6034 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5443 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8243 ; 1.802 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12500 ; 1.986 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 722 ; 6.152 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 348 ;32.734 ;24.799 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 941 ;11.447 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;14.392 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 860 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7047 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1479 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2861 ; 0.867 ; 0.667 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2860 ; 0.867 ; 0.667 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3583 ; 1.404 ; 0.996 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 354 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4890 -16.1130 -44.1550 REMARK 3 T TENSOR REMARK 3 T11: 0.0050 T22: 0.0903 REMARK 3 T33: 0.0089 T12: 0.0008 REMARK 3 T13: 0.0020 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.3578 L22: 0.4073 REMARK 3 L33: 0.8073 L12: -0.0107 REMARK 3 L13: 0.2214 L23: -0.2296 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: -0.0209 S13: -0.0179 REMARK 3 S21: 0.0305 S22: 0.0190 S23: 0.0036 REMARK 3 S31: -0.0263 S32: 0.0081 S33: -0.0397 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 354 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9000 -0.6820 -4.8010 REMARK 3 T TENSOR REMARK 3 T11: 0.0061 T22: 0.0820 REMARK 3 T33: 0.0052 T12: 0.0080 REMARK 3 T13: 0.0013 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.7104 L22: 0.3914 REMARK 3 L33: 0.7440 L12: -0.0401 REMARK 3 L13: 0.2640 L23: -0.1199 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: 0.0149 S13: -0.0392 REMARK 3 S21: -0.0069 S22: 0.0096 S23: 0.0154 REMARK 3 S31: 0.0307 S32: -0.0064 S33: -0.0189 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES REMARK 4 REMARK 4 4QDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-14. REMARK 100 THE RCSB ID CODE IS RCSB085921. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.82656 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52548 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.964 REMARK 200 RESOLUTION RANGE LOW (A) : 88.365 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.21300 REMARK 200 R SYM FOR SHELL (I) : 0.21300 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2F8Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NACL, 0.16M MGCL2, 0.05M TRIS HCL REMARK 280 PH 8.5, 18% PEG 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.44000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.36500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.36500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.44000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 33 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 59 CG GLU B 59 CD 0.090 REMARK 500 GLU B 299 CD GLU B 299 OE1 -0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 LEU A 215 CB - CG - CD2 ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 344 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 242 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 49 -26.08 -143.40 REMARK 500 GLU A 163 53.03 -90.60 REMARK 500 GLU A 259 38.61 -142.72 REMARK 500 ILE A 313 -68.57 -107.72 REMARK 500 ALA A 335 71.50 -160.95 REMARK 500 ASN B 49 -33.78 -138.96 REMARK 500 GLU B 259 38.97 -142.47 REMARK 500 ALA B 335 69.80 -159.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 292 OD1 REMARK 620 2 ARG B 351 O 92.3 REMARK 620 3 ASP B 354 OD1 145.4 84.9 REMARK 620 4 HOH B 701 O 86.5 177.6 97.3 REMARK 620 5 HOH B 529 O 138.3 87.4 76.2 92.1 REMARK 620 6 HOH B 542 O 76.0 87.7 138.1 90.0 62.3 REMARK 620 7 HOH B 708 O 73.7 90.0 71.8 91.7 148.0 149.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 292 OD1 REMARK 620 2 ARG A 351 O 89.3 REMARK 620 3 ASP A 354 OD1 154.7 83.2 REMARK 620 4 HOH A 535 O 85.2 171.6 104.5 REMARK 620 5 HOH A 682 O 131.5 88.0 72.5 90.9 REMARK 620 6 HOH A 514 O 80.2 94.7 76.4 90.6 148.3 REMARK 620 7 HOH A 695 O 67.3 84.7 135.3 87.2 64.2 147.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 302 O REMARK 620 2 SER B 18 O 119.6 REMARK 620 3 LEU B 305 O 92.0 89.9 REMARK 620 4 HOH B 618 O 152.6 85.3 99.8 REMARK 620 5 HOH B 558 O 93.1 147.2 91.0 62.3 REMARK 620 6 HOH B 651 O 81.0 83.1 165.9 91.8 101.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 18 O REMARK 620 2 ASP A 302 O 114.5 REMARK 620 3 LEU A 305 O 95.3 88.7 REMARK 620 4 HOH A 573 O 156.6 88.6 88.5 REMARK 620 5 HOH A 631 O 79.5 74.1 157.6 105.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F8Q RELATED DB: PDB REMARK 900 RELATED ID: 2FGL RELATED DB: PDB REMARK 900 RELATED ID: 4QCE RELATED DB: PDB REMARK 900 RELATED ID: 4QCF RELATED DB: PDB DBREF 4QDM A 1 354 UNP O30700 O30700_9BACI 52 405 DBREF 4QDM B 1 354 UNP O30700 O30700_9BACI 52 405 SEQADV 4QDM MET A 0 UNP O30700 EXPRESSION TAG SEQADV 4QDM LEU A 1 UNP O30700 VAL 52 ENGINEERED MUTATION SEQADV 4QDM MET B 0 UNP O30700 EXPRESSION TAG SEQADV 4QDM LEU B 1 UNP O30700 VAL 52 ENGINEERED MUTATION SEQRES 1 A 355 MET LEU GLN PRO PHE ALA TRP GLN VAL ALA SER LEU ALA SEQRES 2 A 355 ASP ARG TYR GLU GLU SER PHE ASP ILE GLY ALA ALA VAL SEQRES 3 A 355 GLU PRO HIS GLN LEU ASN GLY ARG GLN GLY LYS VAL LEU SEQRES 4 A 355 LYS HIS HIS TYR ASN SER ILE VAL ALA GLU ASN ALA MET SEQRES 5 A 355 LYS PRO ILE SER LEU GLN PRO GLU GLU GLY VAL PHE THR SEQRES 6 A 355 TRP ASP GLY ALA ASP ALA ILE VAL GLU PHE ALA ARG LYS SEQRES 7 A 355 ASN ASN MET ASN LEU ARG PHE HIS THR LEU VAL TRP HIS SEQRES 8 A 355 ASN GLN VAL PRO ASP TRP PHE PHE LEU ASP GLU GLU GLY SEQRES 9 A 355 ASN PRO MET VAL GLU GLU THR ASN GLU ALA LYS ARG GLN SEQRES 10 A 355 ALA ASN LYS GLU LEU LEU LEU GLU ARG LEU GLU THR HIS SEQRES 11 A 355 ILE LYS THR VAL VAL GLU ARG TYR LYS ASP ASP VAL THR SEQRES 12 A 355 ALA TRP ASP VAL VAL ASN GLU VAL VAL ASP ASP GLY THR SEQRES 13 A 355 PRO ASN GLU ARG GLY LEU ARG GLU SER VAL TRP TYR GLN SEQRES 14 A 355 ILE THR GLY ASP GLU TYR ILE ARG VAL ALA PHE GLU THR SEQRES 15 A 355 ALA ARG LYS TYR ALA GLY GLU ASP ALA LYS LEU PHE ILE SEQRES 16 A 355 ASN ASP TYR ASN THR GLU VAL THR PRO LYS ARG ASP HIS SEQRES 17 A 355 LEU TYR ASN LEU VAL GLN ASP LEU LEU ALA ASP GLY VAL SEQRES 18 A 355 PRO ILE ASP GLY VAL GLY HIS GLN ALA HIS ILE GLN ILE SEQRES 19 A 355 ASP TRP PRO THR ILE ASP GLU ILE ARG THR SER MET GLU SEQRES 20 A 355 MET PHE ALA GLY LEU GLY LEU ASP ASN GLN VAL THR GLU SEQRES 21 A 355 LEU ASP VAL SER LEU TYR GLY TRP PRO PRO ARG PRO ALA SEQRES 22 A 355 PHE PRO THR TYR ASP ALA ILE PRO GLN GLU ARG PHE GLN SEQRES 23 A 355 ALA GLN ALA ASP ARG TYR ASN GLN LEU PHE GLU LEU TYR SEQRES 24 A 355 GLU GLU LEU ASP ALA ASP LEU SER SER VAL THR PHE TRP SEQRES 25 A 355 GLY ILE ALA ASP ASN HIS THR TRP LEU ASP ASP ARG ALA SEQRES 26 A 355 ARG GLU TYR ASN ASP GLY VAL GLY LYS ASP ALA PRO PHE SEQRES 27 A 355 VAL PHE ASP PRO ASN TYR ARG VAL LYS PRO ALA PHE TRP SEQRES 28 A 355 ARG ILE ILE ASP SEQRES 1 B 355 MET LEU GLN PRO PHE ALA TRP GLN VAL ALA SER LEU ALA SEQRES 2 B 355 ASP ARG TYR GLU GLU SER PHE ASP ILE GLY ALA ALA VAL SEQRES 3 B 355 GLU PRO HIS GLN LEU ASN GLY ARG GLN GLY LYS VAL LEU SEQRES 4 B 355 LYS HIS HIS TYR ASN SER ILE VAL ALA GLU ASN ALA MET SEQRES 5 B 355 LYS PRO ILE SER LEU GLN PRO GLU GLU GLY VAL PHE THR SEQRES 6 B 355 TRP ASP GLY ALA ASP ALA ILE VAL GLU PHE ALA ARG LYS SEQRES 7 B 355 ASN ASN MET ASN LEU ARG PHE HIS THR LEU VAL TRP HIS SEQRES 8 B 355 ASN GLN VAL PRO ASP TRP PHE PHE LEU ASP GLU GLU GLY SEQRES 9 B 355 ASN PRO MET VAL GLU GLU THR ASN GLU ALA LYS ARG GLN SEQRES 10 B 355 ALA ASN LYS GLU LEU LEU LEU GLU ARG LEU GLU THR HIS SEQRES 11 B 355 ILE LYS THR VAL VAL GLU ARG TYR LYS ASP ASP VAL THR SEQRES 12 B 355 ALA TRP ASP VAL VAL ASN GLU VAL VAL ASP ASP GLY THR SEQRES 13 B 355 PRO ASN GLU ARG GLY LEU ARG GLU SER VAL TRP TYR GLN SEQRES 14 B 355 ILE THR GLY ASP GLU TYR ILE ARG VAL ALA PHE GLU THR SEQRES 15 B 355 ALA ARG LYS TYR ALA GLY GLU ASP ALA LYS LEU PHE ILE SEQRES 16 B 355 ASN ASP TYR ASN THR GLU VAL THR PRO LYS ARG ASP HIS SEQRES 17 B 355 LEU TYR ASN LEU VAL GLN ASP LEU LEU ALA ASP GLY VAL SEQRES 18 B 355 PRO ILE ASP GLY VAL GLY HIS GLN ALA HIS ILE GLN ILE SEQRES 19 B 355 ASP TRP PRO THR ILE ASP GLU ILE ARG THR SER MET GLU SEQRES 20 B 355 MET PHE ALA GLY LEU GLY LEU ASP ASN GLN VAL THR GLU SEQRES 21 B 355 LEU ASP VAL SER LEU TYR GLY TRP PRO PRO ARG PRO ALA SEQRES 22 B 355 PHE PRO THR TYR ASP ALA ILE PRO GLN GLU ARG PHE GLN SEQRES 23 B 355 ALA GLN ALA ASP ARG TYR ASN GLN LEU PHE GLU LEU TYR SEQRES 24 B 355 GLU GLU LEU ASP ALA ASP LEU SER SER VAL THR PHE TRP SEQRES 25 B 355 GLY ILE ALA ASP ASN HIS THR TRP LEU ASP ASP ARG ALA SEQRES 26 B 355 ARG GLU TYR ASN ASP GLY VAL GLY LYS ASP ALA PRO PHE SEQRES 27 B 355 VAL PHE ASP PRO ASN TYR ARG VAL LYS PRO ALA PHE TRP SEQRES 28 B 355 ARG ILE ILE ASP HET MG A 401 1 HET GOL A 402 6 HET NA A 403 1 HET MG B 401 1 HET GOL B 402 6 HET NA B 403 1 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 2(MG 2+) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 NA 2(NA 1+) FORMUL 9 HOH *434(H2 O) HELIX 1 1 PHE A 4 VAL A 8 5 5 HELIX 2 2 SER A 10 TYR A 15 1 6 HELIX 3 3 GLU A 26 LEU A 30 5 5 HELIX 4 4 ASN A 31 TYR A 42 1 12 HELIX 5 5 LYS A 52 GLN A 57 1 6 HELIX 6 6 TRP A 65 ASN A 78 1 14 HELIX 7 7 PRO A 94 LEU A 99 5 6 HELIX 8 8 PRO A 105 GLU A 109 5 5 HELIX 9 9 ASN A 111 LYS A 138 1 28 HELIX 10 10 SER A 164 GLY A 171 1 8 HELIX 11 11 ASP A 172 GLY A 187 1 16 HELIX 12 12 PRO A 203 ASP A 218 1 16 HELIX 13 13 THR A 237 LEU A 251 1 15 HELIX 14 14 THR A 275 ILE A 279 5 5 HELIX 15 15 PRO A 280 LEU A 301 1 22 HELIX 16 16 THR A 318 ASN A 328 1 11 HELIX 17 17 LYS A 346 ASP A 354 1 9 HELIX 18 18 PHE B 4 VAL B 8 5 5 HELIX 19 19 SER B 10 TYR B 15 1 6 HELIX 20 20 GLU B 26 LEU B 30 5 5 HELIX 21 21 ASN B 31 TYR B 42 1 12 HELIX 22 22 LYS B 52 GLN B 57 1 6 HELIX 23 23 TRP B 65 ASN B 78 1 14 HELIX 24 24 PRO B 94 LEU B 99 5 6 HELIX 25 25 PRO B 105 GLU B 109 5 5 HELIX 26 26 ASN B 111 LYS B 138 1 28 HELIX 27 27 SER B 164 GLY B 171 1 8 HELIX 28 28 ASP B 172 GLY B 187 1 16 HELIX 29 29 PRO B 203 ASP B 218 1 16 HELIX 30 30 THR B 237 LEU B 251 1 15 HELIX 31 31 THR B 275 ILE B 279 5 5 HELIX 32 32 PRO B 280 LEU B 301 1 22 HELIX 33 33 THR B 318 ASN B 328 1 11 HELIX 34 34 LYS B 346 ASP B 354 1 9 SHEET 1 A10 HIS A 230 GLN A 232 0 SHEET 2 A10 ASP A 254 SER A 263 1 O SER A 263 N ILE A 231 SHEET 3 A10 LEU A 305 PHE A 310 1 O THR A 309 N VAL A 257 SHEET 4 A10 ASP A 20 VAL A 25 1 N GLY A 22 O VAL A 308 SHEET 5 A10 SER A 44 ALA A 47 1 O VAL A 46 N VAL A 25 SHEET 6 A10 ASN A 81 HIS A 85 1 O ARG A 83 N ILE A 45 SHEET 7 A10 ALA A 143 ASN A 148 1 O ASP A 145 N PHE A 84 SHEET 8 A10 LEU A 192 ASP A 196 1 O PHE A 193 N TRP A 144 SHEET 9 A10 GLY A 224 HIS A 227 1 O GLY A 226 N ILE A 194 SHEET 10 A10 ASP A 254 SER A 263 1 O GLN A 256 N HIS A 227 SHEET 1 B10 HIS B 230 GLN B 232 0 SHEET 2 B10 ASP B 254 SER B 263 1 O SER B 263 N ILE B 231 SHEET 3 B10 LEU B 305 PHE B 310 1 O SER B 307 N VAL B 257 SHEET 4 B10 ASP B 20 VAL B 25 1 N GLY B 22 O PHE B 310 SHEET 5 B10 SER B 44 ALA B 47 1 O VAL B 46 N VAL B 25 SHEET 6 B10 ASN B 81 HIS B 85 1 O ARG B 83 N ILE B 45 SHEET 7 B10 ALA B 143 ASN B 148 1 O ALA B 143 N PHE B 84 SHEET 8 B10 LEU B 192 ASP B 196 1 O PHE B 193 N TRP B 144 SHEET 9 B10 GLY B 224 HIS B 227 1 O GLY B 226 N ILE B 194 SHEET 10 B10 ASP B 254 SER B 263 1 O GLN B 256 N HIS B 227 LINK OD1 ASN B 292 MG MG B 401 1555 1555 2.13 LINK O ARG B 351 MG MG B 401 1555 1555 2.15 LINK OD1 ASP B 354 MG MG B 401 1555 1555 2.16 LINK OD1 ASN A 292 MG MG A 401 1555 1555 2.19 LINK O ASP B 302 NA NA B 403 1555 1555 2.19 LINK O SER A 18 NA NA A 403 1555 1555 2.19 LINK O ARG A 351 MG MG A 401 1555 1555 2.23 LINK O ASP A 302 NA NA A 403 1555 1555 2.27 LINK O LEU A 305 NA NA A 403 1555 1555 2.28 LINK O SER B 18 NA NA B 403 1555 1555 2.29 LINK OD1 ASP A 354 MG MG A 401 1555 1555 2.34 LINK O LEU B 305 NA NA B 403 1555 1555 2.40 LINK MG MG B 401 O HOH B 701 1555 1555 2.04 LINK MG MG A 401 O HOH A 535 1555 1555 2.19 LINK MG MG A 401 O HOH A 682 1555 1555 2.29 LINK NA NA A 403 O HOH A 573 1555 1555 2.30 LINK NA NA B 403 O HOH B 618 1555 1555 2.35 LINK NA NA B 403 O HOH B 558 1555 1555 2.37 LINK MG MG B 401 O HOH B 529 1555 1555 2.39 LINK MG MG A 401 O HOH A 514 1555 1555 2.42 LINK MG MG B 401 O HOH B 542 1555 1555 2.45 LINK MG MG A 401 O HOH A 695 1555 1555 2.48 LINK NA NA B 403 O HOH B 651 1555 1555 2.49 LINK MG MG B 401 O HOH B 708 1555 1555 2.53 LINK NA NA A 403 O HOH A 631 1555 1555 2.87 CISPEP 1 HIS A 85 THR A 86 0 2.94 CISPEP 2 THR A 202 PRO A 203 0 4.40 CISPEP 3 TRP A 235 PRO A 236 0 -7.15 CISPEP 4 TRP A 267 PRO A 268 0 -1.52 CISPEP 5 ARG A 270 PRO A 271 0 -3.92 CISPEP 6 HIS B 85 THR B 86 0 8.02 CISPEP 7 THR B 202 PRO B 203 0 0.56 CISPEP 8 TRP B 235 PRO B 236 0 -7.50 CISPEP 9 TRP B 267 PRO B 268 0 -7.55 CISPEP 10 ARG B 270 PRO B 271 0 -0.58 SITE 1 AC1 7 ASN A 292 ARG A 351 ASP A 354 HOH A 514 SITE 2 AC1 7 HOH A 535 HOH A 682 HOH A 695 SITE 1 AC2 8 GLN A 57 GLU A 60 GLY A 61 TRP A 96 SITE 2 AC2 8 ARG A 125 THR A 128 HIS A 129 HOH A 643 SITE 1 AC3 5 SER A 18 ASP A 302 LEU A 305 HOH A 573 SITE 2 AC3 5 HOH A 631 SITE 1 AC4 7 ASN B 292 ARG B 351 ASP B 354 HOH B 529 SITE 2 AC4 7 HOH B 542 HOH B 701 HOH B 708 SITE 1 AC5 8 GLN B 57 GLU B 60 GLY B 61 TRP B 96 SITE 2 AC5 8 ARG B 125 THR B 128 HIS B 129 HOH B 656 SITE 1 AC6 6 SER B 18 ASP B 302 LEU B 305 HOH B 558 SITE 2 AC6 6 HOH B 618 HOH B 651 CRYST1 54.880 76.580 176.730 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018222 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013058 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005658 0.00000 MASTER 446 0 6 34 20 0 12 6 0 0 0 56 END