HEADER HYDROLASE/DNA 09-MAY-14 4QCB TITLE PROTEIN-DNA COMPLEX OF VACCINIA VIRUS D4 WITH DOUBLE-STRANDED NON- TITLE 2 SPECIFIC DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: URACIL-DNA GLYCOSYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UDG; COMPND 5 EC: 3.2.2.27; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*C)-3'; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 3 ORGANISM_COMMON: VACV; SOURCE 4 ORGANISM_TAXID: 10254; SOURCE 5 STRAIN: WESTERN RESERVE, D4R, VACWR109; SOURCE 6 GENE: VACWR109, D4R, UNG; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES KEYWDS DNA REPAIR ENZYME, COMPONENT OF PROCESSIVITY FACTOR, A20, POXVIRUS, KEYWDS 2 HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.SCHORMANN,S.BANERJEE,R.RICCIARDI,D.CHATTOPADHYAY REVDAT 3 18-APR-18 4QCB 1 JRNL REVDAT 2 29-JUN-16 4QCB 1 SOURCE REVDAT 1 10-JUN-15 4QCB 0 JRNL AUTH N.SCHORMANN,S.BANERJEE,R.RICCIARDI,D.CHATTOPADHYAY JRNL TITL BINDING OF UNDAMAGED DOUBLE STRANDED DNA TO VACCINIA VIRUS JRNL TITL 2 URACIL-DNA GLYCOSYLASE. JRNL REF BMC STRUCT. BIOL. V. 15 10 2015 JRNL REFN ESSN 1472-6807 JRNL PMID 26031450 JRNL DOI 10.1186/S12900-015-0037-1 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 11389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 577 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 845 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3432 REMARK 3 NUCLEIC ACID ATOMS : 445 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.467 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.391 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.827 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4044 ; 0.007 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 3628 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5579 ; 1.185 ; 1.847 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8392 ; 1.297 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 422 ; 6.114 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;34.522 ;24.267 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 600 ;13.732 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.994 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 606 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4131 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 900 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1700 ; 1.070 ; 2.788 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1699 ; 1.070 ; 2.789 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2118 ; 1.861 ; 4.179 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2162 ; 2.838 ; 5.122 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2344 ; 1.781 ; 3.468 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2380 ; 2.378 ; 4.080 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3517 ; 3.981 ; 6.095 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5021 ; 6.804 ;32.446 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5000 ; 6.796 ;32.465 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 218 B 1 218 13363 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QCB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085874. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11991 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.890 REMARK 200 RESOLUTION RANGE LOW (A) : 56.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.15800 REMARK 200 R SYM (I) : 0.15800 REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.50500 REMARK 200 R SYM FOR SHELL (I) : 0.50500 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4DOF, CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2:1 PROTEIN SOLUTION/RESERVOIR (16% REMARK 280 PEG6000, 0.08 M TRIS, PH 8.5, 20% GLYCEROL), VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.69450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.42950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.16350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.42950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.69450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.16350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 ALA A 184 REMARK 465 ARG A 185 REMARK 465 ASP A 186 REMARK 465 ARG A 187 REMARK 465 GLN A 188 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 ALA B 184 REMARK 465 ARG B 185 REMARK 465 ASP B 186 REMARK 465 ARG B 187 REMARK 465 GLN B 188 REMARK 465 DG D 31 REMARK 465 DC D 32 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 189 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 PHE B 189 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 190 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 11 -48.27 74.15 REMARK 500 PRO A 21 -15.37 -49.89 REMARK 500 PHE A 79 -18.55 77.51 REMARK 500 ASP A 138 -76.93 -12.02 REMARK 500 PRO A 173 36.89 -91.35 REMARK 500 PRO A 182 72.61 -64.87 REMARK 500 TYR B 11 -48.99 74.72 REMARK 500 PRO B 21 -15.27 -49.09 REMARK 500 ASP B 73 16.02 80.78 REMARK 500 PHE B 79 -19.18 78.20 REMARK 500 ASP B 138 -76.43 -11.85 REMARK 500 PRO B 173 37.35 -92.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DOF RELATED DB: PDB REMARK 900 HIS-TAGGED WILD TYPE VACCINIA VIRUS URACIL-DNA GLYCOSYLASE REMARK 900 RELATED ID: 4DOG RELATED DB: PDB REMARK 900 TAG-FREE WILD TYPE VACCINIA VIRUS URACIL-DNA GLYCOSYLASE REMARK 900 RELATED ID: 4LZB RELATED DB: PDB REMARK 900 VACCINIA VIRUS URACIL-DNA GLYCOSYLASE-URACIL COMPLEX REMARK 900 RELATED ID: 4QC9 RELATED DB: PDB REMARK 900 RELATED ID: 4QCA RELATED DB: PDB DBREF 4QCB A 1 218 UNP P04303 UNG_VACCW 1 218 DBREF 4QCB B 1 218 UNP P04303 UNG_VACCW 1 218 DBREF 4QCB C 1 12 PDB 4QCB 4QCB 1 12 DBREF 4QCB D 21 32 PDB 4QCB 4QCB 21 32 SEQADV 4QCB GLY A -2 UNP P04303 EXPRESSION TAG SEQADV 4QCB SER A -1 UNP P04303 EXPRESSION TAG SEQADV 4QCB HIS A 0 UNP P04303 EXPRESSION TAG SEQADV 4QCB ASN A 17 UNP P04303 ASP 17 ENGINEERED MUTATION SEQADV 4QCB PHE A 163 UNP P04303 TYR 163 ENGINEERED MUTATION SEQADV 4QCB GLY B -2 UNP P04303 EXPRESSION TAG SEQADV 4QCB SER B -1 UNP P04303 EXPRESSION TAG SEQADV 4QCB HIS B 0 UNP P04303 EXPRESSION TAG SEQADV 4QCB ASN B 17 UNP P04303 ASP 17 ENGINEERED MUTATION SEQADV 4QCB PHE B 163 UNP P04303 TYR 163 ENGINEERED MUTATION SEQRES 1 A 221 GLY SER HIS MET ASN SER VAL THR VAL SER HIS ALA PRO SEQRES 2 A 221 TYR THR ILE THR TYR HIS ASN ASP TRP GLU PRO VAL MET SEQRES 3 A 221 SER GLN LEU VAL GLU PHE TYR ASN GLU VAL ALA SER TRP SEQRES 4 A 221 LEU LEU ARG ASP GLU THR SER PRO ILE PRO ASP LYS PHE SEQRES 5 A 221 PHE ILE GLN LEU LYS GLN PRO LEU ARG ASN LYS ARG VAL SEQRES 6 A 221 CYS VAL CYS GLY ILE ASP PRO TYR PRO LYS ASP GLY THR SEQRES 7 A 221 GLY VAL PRO PHE GLU SER PRO ASN PHE THR LYS LYS SER SEQRES 8 A 221 ILE LYS GLU ILE ALA SER SER ILE SER ARG LEU THR GLY SEQRES 9 A 221 VAL ILE ASP TYR LYS GLY TYR ASN LEU ASN ILE ILE ASP SEQRES 10 A 221 GLY VAL ILE PRO TRP ASN TYR TYR LEU SER CYS LYS LEU SEQRES 11 A 221 GLY GLU THR LYS SER HIS ALA ILE TYR TRP ASP LYS ILE SEQRES 12 A 221 SER LYS LEU LEU LEU GLN HIS ILE THR LYS HIS VAL SER SEQRES 13 A 221 VAL LEU TYR CYS LEU GLY LYS THR ASP PHE SER ASN ILE SEQRES 14 A 221 ARG ALA LYS LEU GLU SER PRO VAL THR THR ILE VAL GLY SEQRES 15 A 221 TYR HIS PRO ALA ALA ARG ASP ARG GLN PHE GLU LYS ASP SEQRES 16 A 221 ARG SER PHE GLU ILE ILE ASN VAL LEU LEU GLU LEU ASP SEQRES 17 A 221 ASN LYS ALA PRO ILE ASN TRP ALA GLN GLY PHE ILE TYR SEQRES 1 B 221 GLY SER HIS MET ASN SER VAL THR VAL SER HIS ALA PRO SEQRES 2 B 221 TYR THR ILE THR TYR HIS ASN ASP TRP GLU PRO VAL MET SEQRES 3 B 221 SER GLN LEU VAL GLU PHE TYR ASN GLU VAL ALA SER TRP SEQRES 4 B 221 LEU LEU ARG ASP GLU THR SER PRO ILE PRO ASP LYS PHE SEQRES 5 B 221 PHE ILE GLN LEU LYS GLN PRO LEU ARG ASN LYS ARG VAL SEQRES 6 B 221 CYS VAL CYS GLY ILE ASP PRO TYR PRO LYS ASP GLY THR SEQRES 7 B 221 GLY VAL PRO PHE GLU SER PRO ASN PHE THR LYS LYS SER SEQRES 8 B 221 ILE LYS GLU ILE ALA SER SER ILE SER ARG LEU THR GLY SEQRES 9 B 221 VAL ILE ASP TYR LYS GLY TYR ASN LEU ASN ILE ILE ASP SEQRES 10 B 221 GLY VAL ILE PRO TRP ASN TYR TYR LEU SER CYS LYS LEU SEQRES 11 B 221 GLY GLU THR LYS SER HIS ALA ILE TYR TRP ASP LYS ILE SEQRES 12 B 221 SER LYS LEU LEU LEU GLN HIS ILE THR LYS HIS VAL SER SEQRES 13 B 221 VAL LEU TYR CYS LEU GLY LYS THR ASP PHE SER ASN ILE SEQRES 14 B 221 ARG ALA LYS LEU GLU SER PRO VAL THR THR ILE VAL GLY SEQRES 15 B 221 TYR HIS PRO ALA ALA ARG ASP ARG GLN PHE GLU LYS ASP SEQRES 16 B 221 ARG SER PHE GLU ILE ILE ASN VAL LEU LEU GLU LEU ASP SEQRES 17 B 221 ASN LYS ALA PRO ILE ASN TRP ALA GLN GLY PHE ILE TYR SEQRES 1 C 12 DG DC DA DA DA DC DG DT DT DT DG DC SEQRES 1 D 12 DG DC DA DA DA DC DG DT DT DT DG DC HET GOL A 301 6 HET GOL A 302 6 HET GOL A 303 6 HET GOL B 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 HOH *118(H2 O) HELIX 1 1 HIS A 16 ASP A 18 5 3 HELIX 2 2 TRP A 19 LEU A 38 1 20 HELIX 3 3 ILE A 45 PHE A 49 5 5 HELIX 4 4 PHE A 50 GLN A 55 5 6 HELIX 5 5 LYS A 86 GLY A 101 1 16 HELIX 6 6 LEU A 110 ILE A 113 5 4 HELIX 7 7 HIS A 133 LYS A 150 1 18 HELIX 8 8 GLY A 159 SER A 164 1 6 HELIX 9 9 ASN A 165 LEU A 170 5 6 HELIX 10 10 GLU A 190 ASP A 205 1 16 HELIX 11 11 ASN A 211 GLN A 214 5 4 HELIX 12 12 HIS B 16 ASP B 18 5 3 HELIX 13 13 TRP B 19 LEU B 38 1 20 HELIX 14 14 ILE B 45 PHE B 49 5 5 HELIX 15 15 PHE B 50 GLN B 55 5 6 HELIX 16 16 LYS B 86 GLY B 101 1 16 HELIX 17 17 LEU B 110 ILE B 113 5 4 HELIX 18 18 HIS B 133 LYS B 150 1 18 HELIX 19 19 GLY B 159 SER B 164 1 6 HELIX 20 20 ASN B 165 LEU B 170 5 6 HELIX 21 21 LYS B 191 ASP B 205 1 15 HELIX 22 22 ASN B 211 GLN B 214 5 4 SHEET 1 A 2 ASN A 2 THR A 5 0 SHEET 2 A 2 THR A 12 TYR A 15 -1 O TYR A 15 N ASN A 2 SHEET 1 B 2 THR A 42 SER A 43 0 SHEET 2 B 2 CYS A 125 LYS A 126 -1 O CYS A 125 N SER A 43 SHEET 1 C 4 VAL A 116 ASN A 120 0 SHEET 2 C 4 VAL A 62 GLY A 66 1 N GLY A 66 O TRP A 119 SHEET 3 C 4 VAL A 154 LEU A 158 1 O TYR A 156 N CYS A 63 SHEET 4 C 4 THR A 175 GLY A 179 1 O THR A 175 N LEU A 155 SHEET 1 D 2 GLY A 107 TYR A 108 0 SHEET 2 D 2 PHE A 216 ILE A 217 -1 O ILE A 217 N GLY A 107 SHEET 1 E 2 ASN B 2 THR B 5 0 SHEET 2 E 2 THR B 12 TYR B 15 -1 O ILE B 13 N VAL B 4 SHEET 1 F 2 THR B 42 SER B 43 0 SHEET 2 F 2 CYS B 125 LYS B 126 -1 O CYS B 125 N SER B 43 SHEET 1 G 4 VAL B 116 ASN B 120 0 SHEET 2 G 4 VAL B 62 GLY B 66 1 N VAL B 64 O TRP B 119 SHEET 3 G 4 VAL B 154 LEU B 158 1 O TYR B 156 N CYS B 63 SHEET 4 G 4 THR B 175 GLY B 179 1 O THR B 175 N LEU B 155 SHEET 1 H 2 GLY B 107 TYR B 108 0 SHEET 2 H 2 PHE B 216 ILE B 217 -1 O ILE B 217 N GLY B 107 CISPEP 1 ALA A 9 PRO A 10 0 5.96 CISPEP 2 SER A 43 PRO A 44 0 -6.15 CISPEP 3 ALA B 9 PRO B 10 0 6.51 CISPEP 4 SER B 43 PRO B 44 0 -6.99 SITE 1 AC1 7 ASP A 68 PRO A 69 TYR A 70 PRO A 78 SITE 2 AC1 7 PHE A 79 ASN A 120 HOH A 410 SITE 1 AC2 5 GLU A 32 VAL A 33 TYR A 136 LYS A 139 SITE 2 AC2 5 ILE A 140 SITE 1 AC3 5 ILE A 67 TYR A 122 ASP A 162 ILE A 166 SITE 2 AC3 5 LYS A 169 SITE 1 AC4 7 ASP B 68 PRO B 69 TYR B 70 PRO B 78 SITE 2 AC4 7 PHE B 79 ASN B 120 HOH B 426 CRYST1 39.389 92.327 142.859 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025388 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010831 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007000 0.00000 MASTER 337 0 4 22 20 0 8 6 0 0 0 36 END