HEADER ELECTRON TRANSPORT 05-MAY-14 4QAO TITLE LYSINE-LIGATED CYTOCHROME C WITH F82H COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C ISO-1; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 8-109; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: CYC1, YJR048W, J1653; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.F.AMACHER,M.Q.ZHU,F.ZHONG,E.K.PLETNEVA,D.R.MADDEN REVDAT 3 17-JUL-19 4QAO 1 REMARK REVDAT 2 22-NOV-17 4QAO 1 REMARK REVDAT 1 05-AUG-15 4QAO 0 JRNL AUTH J.F.AMACHER JRNL TITL UNDERSTANDING PDZ AFFINITY AND SELECTIVITY: ALL RESIDUES JRNL TITL 2 CONSIDERED JRNL REF THESIS 2014 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1311 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1788 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.1640 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2460 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.19000 REMARK 3 B22 (A**2) : -2.19000 REMARK 3 B33 (A**2) : 4.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.037 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.034 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.939 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2664 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2496 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3615 ; 1.979 ; 2.026 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5760 ; 1.242 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 6.470 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;37.801 ;24.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 459 ;18.866 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;11.118 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 348 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3051 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 636 ; 0.018 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1269 ; 3.545 ; 2.934 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1268 ; 3.528 ; 2.932 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1581 ; 4.730 ; 4.389 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1391 ; 3.450 ; 3.080 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 3 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.328 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -1/2H-1/2K+1/2L, -1/2H-1/2K-1/2L, H-K REMARK 3 TWIN FRACTION : 0.329 REMARK 3 TWIN DOMAIN : 3 REMARK 3 TWIN OPERATOR : -1/2H+1/2K+1/2L, 1/2H-1/2K+1/2L, H+K REMARK 3 TWIN FRACTION : 0.343 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0781 REMARK 200 MONOCHROMATOR : CHANNEL CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25155 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.103 REMARK 200 RESOLUTION RANGE LOW (A) : 19.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 8.480 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 29.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 39.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 29.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.54900 REMARK 200 FOR SHELL : 8.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4Q5P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% W/V PEG, 0.3 M AMMONIUM PHOSPHATE, REMARK 280 0.1 M TRIS, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 52.98000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 52.98000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 74.97500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 52.98000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 52.98000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 74.97500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 52.98000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 52.98000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 74.97500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 52.98000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 52.98000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 74.97500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 52.98000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 52.98000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 74.97500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 52.98000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 52.98000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 74.97500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 52.98000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 52.98000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 74.97500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 52.98000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 52.98000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 74.97500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 105.96000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 52.98000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 52.98000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.97500 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 149.95000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 14 CAB HEM B 201 1.82 REMARK 500 SG CYS C 14 CAB HEM C 201 2.00 REMARK 500 SG CYS B 17 CAC HEM B 201 2.12 REMARK 500 SG CYS A 14 CAB HEM A 201 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SG CYS C 78 SG CYS C 78 7556 1.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 -142.30 -127.03 REMARK 500 ASN A 56 64.89 65.13 REMARK 500 LYS B 27 -142.69 -134.98 REMARK 500 ASN B 31 134.30 -36.84 REMARK 500 ASN B 56 67.72 65.01 REMARK 500 HIS B 82 88.35 -64.90 REMARK 500 LYS C 27 -140.04 -123.67 REMARK 500 ASN C 56 65.20 70.51 REMARK 500 CYS C 78 -52.70 -125.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEM A 201 NA 76.1 REMARK 620 3 HEM A 201 NB 94.6 91.6 REMARK 620 4 HEM A 201 NC 102.2 178.2 87.9 REMARK 620 5 HEM A 201 ND 84.6 89.1 178.7 91.3 REMARK 620 6 LYS A 73 NZ 169.2 97.4 94.2 84.4 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 18 NE2 REMARK 620 2 HEM B 201 NA 90.3 REMARK 620 3 HEM B 201 NB 87.6 89.5 REMARK 620 4 HEM B 201 NC 88.7 179.1 90.4 REMARK 620 5 HEM B 201 ND 91.8 90.0 179.2 90.1 REMARK 620 6 LYS B 73 NZ 176.3 87.4 89.4 93.5 91.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS C 73 NZ REMARK 620 2 HEM C 201 NA 89.1 REMARK 620 3 HEM C 201 NB 88.5 89.5 REMARK 620 4 HEM C 201 NC 91.5 179.3 90.8 REMARK 620 5 HEM C 201 ND 91.9 90.7 179.5 89.1 REMARK 620 6 HIS C 18 NE2 178.3 90.2 93.0 89.2 86.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q5P RELATED DB: PDB DBREF 4QAO A -2 101 UNP P00044 CYC1_YEAST 4 107 DBREF 4QAO B -2 101 UNP P00044 CYC1_YEAST 4 107 DBREF 4QAO C -2 101 UNP P00044 CYC1_YEAST 4 107 SEQADV 4QAO ALA A 72 UNP P00044 LYS 78 CONFLICT SEQADV 4QAO CYS A 78 UNP P00044 THR 84 ENGINEERED MUTATION SEQADV 4QAO GLY A 79 UNP P00044 LYS 85 ENGINEERED MUTATION SEQADV 4QAO HIS A 82 UNP P00044 PHE 88 ENGINEERED MUTATION SEQADV 4QAO SER A 102 UNP P00044 EXPRESSION TAG SEQADV 4QAO GLU A 103 UNP P00044 EXPRESSION TAG SEQADV 4QAO ALA B 72 UNP P00044 LYS 78 CONFLICT SEQADV 4QAO CYS B 78 UNP P00044 THR 84 ENGINEERED MUTATION SEQADV 4QAO GLY B 79 UNP P00044 LYS 85 ENGINEERED MUTATION SEQADV 4QAO HIS B 82 UNP P00044 PHE 88 ENGINEERED MUTATION SEQADV 4QAO SER B 102 UNP P00044 EXPRESSION TAG SEQADV 4QAO GLU B 103 UNP P00044 EXPRESSION TAG SEQADV 4QAO ALA C 72 UNP P00044 LYS 78 CONFLICT SEQADV 4QAO CYS C 78 UNP P00044 THR 84 ENGINEERED MUTATION SEQADV 4QAO GLY C 79 UNP P00044 LYS 85 ENGINEERED MUTATION SEQADV 4QAO HIS C 82 UNP P00044 PHE 88 ENGINEERED MUTATION SEQADV 4QAO SER C 102 UNP P00044 EXPRESSION TAG SEQADV 4QAO GLU C 103 UNP P00044 EXPRESSION TAG SEQRES 1 A 106 PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR LEU PHE SEQRES 2 A 106 LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU LYS GLY SEQRES 3 A 106 GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY ILE PHE SEQRES 4 A 106 GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER TYR THR SEQRES 5 A 106 ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP GLU ASN SEQRES 6 A 106 ASN MET SER GLU TYR LEU THR ASN PRO ALA LYS TYR ILE SEQRES 7 A 106 PRO GLY CYS GLY MET ALA HIS GLY GLY LEU LYS LYS GLU SEQRES 8 A 106 LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS LYS ALA SEQRES 9 A 106 SER GLU SEQRES 1 B 106 PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR LEU PHE SEQRES 2 B 106 LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU LYS GLY SEQRES 3 B 106 GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY ILE PHE SEQRES 4 B 106 GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER TYR THR SEQRES 5 B 106 ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP GLU ASN SEQRES 6 B 106 ASN MET SER GLU TYR LEU THR ASN PRO ALA LYS TYR ILE SEQRES 7 B 106 PRO GLY CYS GLY MET ALA HIS GLY GLY LEU LYS LYS GLU SEQRES 8 B 106 LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS LYS ALA SEQRES 9 B 106 SER GLU SEQRES 1 C 106 PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR LEU PHE SEQRES 2 C 106 LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU LYS GLY SEQRES 3 C 106 GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY ILE PHE SEQRES 4 C 106 GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER TYR THR SEQRES 5 C 106 ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP GLU ASN SEQRES 6 C 106 ASN MET SER GLU TYR LEU THR ASN PRO ALA LYS TYR ILE SEQRES 7 C 106 PRO GLY CYS GLY MET ALA HIS GLY GLY LEU LYS LYS GLU SEQRES 8 C 106 LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS LYS ALA SEQRES 9 C 106 SER GLU HET HEM A 201 43 HET HEM B 201 43 HET HEM C 201 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 4 HEM 3(C34 H32 FE N4 O4) FORMUL 7 HOH *94(H2 O) HELIX 1 1 SER A 2 CYS A 14 1 13 HELIX 2 2 GLY A 34 ARG A 38 5 5 HELIX 3 3 ASP A 50 LYS A 55 1 6 HELIX 4 4 ASP A 60 ASN A 70 1 11 HELIX 5 5 LYS A 87 SER A 102 1 16 HELIX 6 6 SER B 2 CYS B 14 1 13 HELIX 7 7 GLY B 34 ARG B 38 5 5 HELIX 8 8 ASN B 52 ASN B 56 5 5 HELIX 9 9 ASP B 60 ASN B 70 1 11 HELIX 10 10 LYS B 87 SER B 102 1 16 HELIX 11 11 SER C 2 CYS C 14 1 13 HELIX 12 12 GLY C 34 ARG C 38 5 5 HELIX 13 13 ASP C 50 LYS C 55 1 6 HELIX 14 14 ASP C 60 ASN C 70 1 11 HELIX 15 15 LYS C 87 SER C 102 1 16 SHEET 1 A 2 ALA A 72 ILE A 75 0 SHEET 2 A 2 GLY A 79 HIS A 82 -1 O GLY A 79 N ILE A 75 SHEET 1 B 2 ALA B 72 ILE B 75 0 SHEET 2 B 2 GLY B 79 HIS B 82 -1 O ALA B 81 N LYS B 73 SHEET 1 C 2 ALA C 72 ILE C 75 0 SHEET 2 C 2 GLY C 79 HIS C 82 -1 O GLY C 79 N ILE C 75 SSBOND 1 CYS A 78 CYS A 78 1555 2565 2.07 SSBOND 2 CYS B 78 CYS B 78 1555 16555 1.96 LINK NE2 HIS A 18 FE HEM A 201 1555 1555 1.94 LINK NE2 HIS B 18 FE HEM B 201 1555 1555 2.07 LINK NZ LYS C 73 FE HEM C 201 1555 1555 2.13 LINK NE2 HIS C 18 FE HEM C 201 1555 1555 2.14 LINK NZ LYS A 73 FE HEM A 201 1555 1555 2.34 LINK NZ LYS B 73 FE HEM B 201 1555 1555 2.42 SITE 1 AC1 24 CYS A 14 CYS A 17 HIS A 18 VAL A 28 SITE 2 AC1 24 PRO A 30 LEU A 32 ILE A 35 SER A 40 SITE 3 AC1 24 GLY A 41 TYR A 46 TYR A 48 THR A 49 SITE 4 AC1 24 ASP A 50 TRP A 59 TYR A 67 LYS A 73 SITE 5 AC1 24 ILE A 75 PRO A 76 GLY A 77 ALA A 81 SITE 6 AC1 24 HIS A 82 HOH A 301 HOH A 303 HOH A 312 SITE 1 AC2 20 ARG B 13 CYS B 14 CYS B 17 HIS B 18 SITE 2 AC2 20 VAL B 28 ILE B 35 SER B 40 GLY B 41 SITE 3 AC2 20 TYR B 46 TYR B 48 THR B 49 ASP B 50 SITE 4 AC2 20 TRP B 59 TYR B 67 LYS B 73 PRO B 76 SITE 5 AC2 20 GLY B 83 LEU B 94 HOH B 305 HOH B 307 SITE 1 AC3 24 ARG C 13 CYS C 14 CYS C 17 HIS C 18 SITE 2 AC3 24 VAL C 28 ILE C 35 SER C 40 GLY C 41 SITE 3 AC3 24 TYR C 46 TYR C 48 THR C 49 ASP C 50 SITE 4 AC3 24 ILE C 53 TRP C 59 MET C 64 TYR C 67 SITE 5 AC3 24 LYS C 73 ILE C 75 PRO C 76 GLY C 77 SITE 6 AC3 24 ALA C 81 HOH C 303 HOH C 341 HOH C 342 CRYST1 105.960 105.960 149.950 90.00 90.00 90.00 I 4 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009438 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009438 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006669 0.00000 MASTER 444 0 3 15 6 0 17 6 0 0 0 27 END