HEADER TRANSFERASE/TRANSFERASE INHIBITOR 03-APR-14 4Q1F TITLE HUMAN DCK C4S-S74E MUTANT IN COMPLEX WITH UDP AND THE INHIBITOR 12R TITLE 2 {N-{2-[5-(4-{(1R)-1-[(4,6-DIAMINOPYRIMIDIN-2-YL)SULFANYL]ETHYL}-5- TITLE 3 METHYL-1,3-THIAZOL-2-YL)-2-METHOXYPHENOXY]ETHYL}METHANESULFONAMIDE} COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYCYTIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DCK; COMPND 5 EC: 2.7.1.74; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DCK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS PHOSPHORYL TRANSFER, PHOSPHORYLATION, DEOXYCYTIDINE, TRANSFERASE, KEYWDS 2 INHIBITOR COMPLEX, KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.NOMME,A.LAVIE REVDAT 2 17-DEC-14 4Q1F 1 JRNL REVDAT 1 05-NOV-14 4Q1F 0 JRNL AUTH J.NOMME,Z.LI,R.M.GIPSON,J.WANG,A.L.ARMIJO,T.LE,S.PODDAR, JRNL AUTH 2 T.SMITH,B.D.SANTARSIERO,H.A.NGUYEN,J.CZERNIN, JRNL AUTH 3 A.N.ALEXANDROVA,M.E.JUNG,C.G.RADU,A.LAVIE JRNL TITL STRUCTURE-GUIDED DEVELOPMENT OF DEOXYCYTIDINE KINASE JRNL TITL 2 INHIBITORS WITH NANOMOLAR AFFINITY AND IMPROVED METABOLIC JRNL TITL 3 STABILITY. JRNL REF J.MED.CHEM. V. 57 9480 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25341194 JRNL DOI 10.1021/JM501124J REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 32133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 1679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.4266 - 4.7827 0.88 2432 157 0.1659 0.1731 REMARK 3 2 4.7827 - 3.8092 0.92 2511 139 0.1498 0.1540 REMARK 3 3 3.8092 - 3.3315 0.92 2508 152 0.1834 0.2459 REMARK 3 4 3.3315 - 3.0287 0.93 2536 127 0.2236 0.2426 REMARK 3 5 3.0287 - 2.8125 0.94 2571 137 0.2349 0.2533 REMARK 3 6 2.8125 - 2.6473 0.94 2505 135 0.2554 0.3303 REMARK 3 7 2.6473 - 2.5152 0.94 2586 132 0.2529 0.3647 REMARK 3 8 2.5152 - 2.4060 0.94 2543 138 0.2564 0.3219 REMARK 3 9 2.4060 - 2.3136 0.95 2582 116 0.2532 0.2975 REMARK 3 10 2.3136 - 2.2339 0.92 2500 152 0.3511 0.3958 REMARK 3 11 2.2339 - 2.1642 0.94 2556 128 0.3149 0.3973 REMARK 3 12 2.1642 - 2.1000 0.94 2569 134 0.2656 0.2547 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4006 REMARK 3 ANGLE : 1.027 5444 REMARK 3 CHIRALITY : 0.029 580 REMARK 3 PLANARITY : 0.004 678 REMARK 3 DIHEDRAL : 17.062 1468 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q1F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-APR-14. REMARK 100 THE RCSB ID CODE IS RCSB085483. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32727 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 21.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.75600 REMARK 200 FOR SHELL : 2.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4JLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M TRISODIUM CITRATE DEHYDRATE AND REMARK 280 25 MM HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.63900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.31950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.95850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 PRO A 4 REMARK 465 PRO A 5 REMARK 465 LYS A 6 REMARK 465 ARG A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 PRO A 10 REMARK 465 SER A 11 REMARK 465 PHE A 12 REMARK 465 SER A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 GLU A 17 REMARK 465 GLY A 18 REMARK 465 THR A 19 REMARK 465 VAL A 61 REMARK 465 GLN A 62 REMARK 465 SER A 63 REMARK 465 THR A 64 REMARK 465 GLN A 65 REMARK 465 ASP A 66 REMARK 465 GLU A 67 REMARK 465 PHE A 68 REMARK 465 GLU A 69 REMARK 465 GLU A 70 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 PRO B 4 REMARK 465 PRO B 5 REMARK 465 LYS B 6 REMARK 465 ARG B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 PRO B 10 REMARK 465 SER B 11 REMARK 465 PHE B 12 REMARK 465 SER B 13 REMARK 465 ALA B 14 REMARK 465 SER B 15 REMARK 465 SER B 16 REMARK 465 GLU B 17 REMARK 465 GLY B 18 REMARK 465 THR B 19 REMARK 465 VAL B 61 REMARK 465 GLN B 62 REMARK 465 SER B 63 REMARK 465 THR B 64 REMARK 465 GLN B 65 REMARK 465 ASP B 66 REMARK 465 GLU B 67 REMARK 465 PHE B 68 REMARK 465 GLU B 69 REMARK 465 GLU B 70 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 57 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 71 CG CD1 CD2 REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 ASP A 118 CG OD1 OD2 REMARK 470 GLN A 165 CG CD OE1 NE2 REMARK 470 PHE A 166 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 ARG B 57 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 71 CG CD1 CD2 REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 ASP B 118 CG OD1 OD2 REMARK 470 GLN B 165 CG CD OE1 NE2 REMARK 470 PHE B 166 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 196 CG CD OE1 OE2 REMARK 470 LYS B 222 CG CD CE NZ REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 195 O HOH B 463 2.15 REMARK 500 O HOH A 466 O HOH A 470 2.16 REMARK 500 O HOH A 465 O HOH A 466 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 197 CD GLU A 197 OE1 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 194 NE - CZ - NH1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 194 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 88 79.82 -157.64 REMARK 500 ASP A 118 11.04 58.94 REMARK 500 ARG A 128 -176.35 61.79 REMARK 500 GLN A 165 33.96 -87.72 REMARK 500 PHE A 166 -40.55 -170.33 REMARK 500 SER A 169 2.43 -68.88 REMARK 500 ARG A 194 100.79 -23.63 REMARK 500 GLN A 198 -82.68 -41.56 REMARK 500 LYS A 245 76.11 -162.77 REMARK 500 ARG B 128 167.51 61.94 REMARK 500 ASN B 163 41.64 -75.98 REMARK 500 ASN B 164 -56.66 -143.29 REMARK 500 GLN B 165 42.21 -100.01 REMARK 500 PHE B 166 -45.50 -168.66 REMARK 500 ASN B 195 71.20 -47.81 REMARK 500 GLU B 196 -45.96 175.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2XN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2XN B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q18 RELATED DB: PDB REMARK 900 RELATED ID: 4Q19 RELATED DB: PDB REMARK 900 RELATED ID: 4Q1A RELATED DB: PDB REMARK 900 RELATED ID: 4Q1B RELATED DB: PDB REMARK 900 RELATED ID: 4Q1C RELATED DB: PDB REMARK 900 RELATED ID: 4Q1D RELATED DB: PDB REMARK 900 RELATED ID: 4Q1E RELATED DB: PDB DBREF 4Q1F A 1 260 UNP P27707 DCK_HUMAN 1 260 DBREF 4Q1F B 1 260 UNP P27707 DCK_HUMAN 1 260 SEQADV 4Q1F MET A -19 UNP P27707 EXPRESSION TAG SEQADV 4Q1F GLY A -18 UNP P27707 EXPRESSION TAG SEQADV 4Q1F SER A -17 UNP P27707 EXPRESSION TAG SEQADV 4Q1F SER A -16 UNP P27707 EXPRESSION TAG SEQADV 4Q1F HIS A -15 UNP P27707 EXPRESSION TAG SEQADV 4Q1F HIS A -14 UNP P27707 EXPRESSION TAG SEQADV 4Q1F HIS A -13 UNP P27707 EXPRESSION TAG SEQADV 4Q1F HIS A -12 UNP P27707 EXPRESSION TAG SEQADV 4Q1F HIS A -11 UNP P27707 EXPRESSION TAG SEQADV 4Q1F HIS A -10 UNP P27707 EXPRESSION TAG SEQADV 4Q1F SER A -9 UNP P27707 EXPRESSION TAG SEQADV 4Q1F SER A -8 UNP P27707 EXPRESSION TAG SEQADV 4Q1F GLY A -7 UNP P27707 EXPRESSION TAG SEQADV 4Q1F LEU A -6 UNP P27707 EXPRESSION TAG SEQADV 4Q1F VAL A -5 UNP P27707 EXPRESSION TAG SEQADV 4Q1F PRO A -4 UNP P27707 EXPRESSION TAG SEQADV 4Q1F ARG A -3 UNP P27707 EXPRESSION TAG SEQADV 4Q1F GLY A -2 UNP P27707 EXPRESSION TAG SEQADV 4Q1F SER A -1 UNP P27707 EXPRESSION TAG SEQADV 4Q1F HIS A 0 UNP P27707 EXPRESSION TAG SEQADV 4Q1F SER A 9 UNP P27707 CYS 9 ENGINEERED MUTATION SEQADV 4Q1F SER A 45 UNP P27707 CYS 45 ENGINEERED MUTATION SEQADV 4Q1F SER A 59 UNP P27707 CYS 59 ENGINEERED MUTATION SEQADV 4Q1F GLU A 74 UNP P27707 SER 74 ENGINEERED MUTATION SEQADV 4Q1F SER A 146 UNP P27707 CYS 146 ENGINEERED MUTATION SEQADV 4Q1F MET B -19 UNP P27707 EXPRESSION TAG SEQADV 4Q1F GLY B -18 UNP P27707 EXPRESSION TAG SEQADV 4Q1F SER B -17 UNP P27707 EXPRESSION TAG SEQADV 4Q1F SER B -16 UNP P27707 EXPRESSION TAG SEQADV 4Q1F HIS B -15 UNP P27707 EXPRESSION TAG SEQADV 4Q1F HIS B -14 UNP P27707 EXPRESSION TAG SEQADV 4Q1F HIS B -13 UNP P27707 EXPRESSION TAG SEQADV 4Q1F HIS B -12 UNP P27707 EXPRESSION TAG SEQADV 4Q1F HIS B -11 UNP P27707 EXPRESSION TAG SEQADV 4Q1F HIS B -10 UNP P27707 EXPRESSION TAG SEQADV 4Q1F SER B -9 UNP P27707 EXPRESSION TAG SEQADV 4Q1F SER B -8 UNP P27707 EXPRESSION TAG SEQADV 4Q1F GLY B -7 UNP P27707 EXPRESSION TAG SEQADV 4Q1F LEU B -6 UNP P27707 EXPRESSION TAG SEQADV 4Q1F VAL B -5 UNP P27707 EXPRESSION TAG SEQADV 4Q1F PRO B -4 UNP P27707 EXPRESSION TAG SEQADV 4Q1F ARG B -3 UNP P27707 EXPRESSION TAG SEQADV 4Q1F GLY B -2 UNP P27707 EXPRESSION TAG SEQADV 4Q1F SER B -1 UNP P27707 EXPRESSION TAG SEQADV 4Q1F HIS B 0 UNP P27707 EXPRESSION TAG SEQADV 4Q1F SER B 9 UNP P27707 CYS 9 ENGINEERED MUTATION SEQADV 4Q1F SER B 45 UNP P27707 CYS 45 ENGINEERED MUTATION SEQADV 4Q1F SER B 59 UNP P27707 CYS 59 ENGINEERED MUTATION SEQADV 4Q1F GLU B 74 UNP P27707 SER 74 ENGINEERED MUTATION SEQADV 4Q1F SER B 146 UNP P27707 CYS 146 ENGINEERED MUTATION SEQRES 1 A 280 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 280 LEU VAL PRO ARG GLY SER HIS MET ALA THR PRO PRO LYS SEQRES 3 A 280 ARG SER SER PRO SER PHE SER ALA SER SER GLU GLY THR SEQRES 4 A 280 ARG ILE LYS LYS ILE SER ILE GLU GLY ASN ILE ALA ALA SEQRES 5 A 280 GLY LYS SER THR PHE VAL ASN ILE LEU LYS GLN LEU SER SEQRES 6 A 280 GLU ASP TRP GLU VAL VAL PRO GLU PRO VAL ALA ARG TRP SEQRES 7 A 280 SER ASN VAL GLN SER THR GLN ASP GLU PHE GLU GLU LEU SEQRES 8 A 280 THR MET GLU GLN LYS ASN GLY GLY ASN VAL LEU GLN MET SEQRES 9 A 280 MET TYR GLU LYS PRO GLU ARG TRP SER PHE THR PHE GLN SEQRES 10 A 280 THR TYR ALA CYS LEU SER ARG ILE ARG ALA GLN LEU ALA SEQRES 11 A 280 SER LEU ASN GLY LYS LEU LYS ASP ALA GLU LYS PRO VAL SEQRES 12 A 280 LEU PHE PHE GLU ARG SER VAL TYR SER ASP ARG TYR ILE SEQRES 13 A 280 PHE ALA SER ASN LEU TYR GLU SER GLU SER MET ASN GLU SEQRES 14 A 280 THR GLU TRP THR ILE TYR GLN ASP TRP HIS ASP TRP MET SEQRES 15 A 280 ASN ASN GLN PHE GLY GLN SER LEU GLU LEU ASP GLY ILE SEQRES 16 A 280 ILE TYR LEU GLN ALA THR PRO GLU THR CYS LEU HIS ARG SEQRES 17 A 280 ILE TYR LEU ARG GLY ARG ASN GLU GLU GLN GLY ILE PRO SEQRES 18 A 280 LEU GLU TYR LEU GLU LYS LEU HIS TYR LYS HIS GLU SER SEQRES 19 A 280 TRP LEU LEU HIS ARG THR LEU LYS THR ASN PHE ASP TYR SEQRES 20 A 280 LEU GLN GLU VAL PRO ILE LEU THR LEU ASP VAL ASN GLU SEQRES 21 A 280 ASP PHE LYS ASP LYS TYR GLU SER LEU VAL GLU LYS VAL SEQRES 22 A 280 LYS GLU PHE LEU SER THR LEU SEQRES 1 B 280 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 280 LEU VAL PRO ARG GLY SER HIS MET ALA THR PRO PRO LYS SEQRES 3 B 280 ARG SER SER PRO SER PHE SER ALA SER SER GLU GLY THR SEQRES 4 B 280 ARG ILE LYS LYS ILE SER ILE GLU GLY ASN ILE ALA ALA SEQRES 5 B 280 GLY LYS SER THR PHE VAL ASN ILE LEU LYS GLN LEU SER SEQRES 6 B 280 GLU ASP TRP GLU VAL VAL PRO GLU PRO VAL ALA ARG TRP SEQRES 7 B 280 SER ASN VAL GLN SER THR GLN ASP GLU PHE GLU GLU LEU SEQRES 8 B 280 THR MET GLU GLN LYS ASN GLY GLY ASN VAL LEU GLN MET SEQRES 9 B 280 MET TYR GLU LYS PRO GLU ARG TRP SER PHE THR PHE GLN SEQRES 10 B 280 THR TYR ALA CYS LEU SER ARG ILE ARG ALA GLN LEU ALA SEQRES 11 B 280 SER LEU ASN GLY LYS LEU LYS ASP ALA GLU LYS PRO VAL SEQRES 12 B 280 LEU PHE PHE GLU ARG SER VAL TYR SER ASP ARG TYR ILE SEQRES 13 B 280 PHE ALA SER ASN LEU TYR GLU SER GLU SER MET ASN GLU SEQRES 14 B 280 THR GLU TRP THR ILE TYR GLN ASP TRP HIS ASP TRP MET SEQRES 15 B 280 ASN ASN GLN PHE GLY GLN SER LEU GLU LEU ASP GLY ILE SEQRES 16 B 280 ILE TYR LEU GLN ALA THR PRO GLU THR CYS LEU HIS ARG SEQRES 17 B 280 ILE TYR LEU ARG GLY ARG ASN GLU GLU GLN GLY ILE PRO SEQRES 18 B 280 LEU GLU TYR LEU GLU LYS LEU HIS TYR LYS HIS GLU SER SEQRES 19 B 280 TRP LEU LEU HIS ARG THR LEU LYS THR ASN PHE ASP TYR SEQRES 20 B 280 LEU GLN GLU VAL PRO ILE LEU THR LEU ASP VAL ASN GLU SEQRES 21 B 280 ASP PHE LYS ASP LYS TYR GLU SER LEU VAL GLU LYS VAL SEQRES 22 B 280 LYS GLU PHE LEU SER THR LEU HET UDP A 301 25 HET 2XN A 302 33 HET UDP B 301 25 HET 2XN B 302 33 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM 2XN N-{2-[5-(4-{(1R)-1-[(4,6-DIAMINOPYRIMIDIN-2-YL) HETNAM 2 2XN SULFANYL]ETHYL}-5-METHYL-1,3-THIAZOL-2-YL)-2- HETNAM 3 2XN METHOXYPHENOXY]ETHYL}METHANESULFONAMIDE FORMUL 3 UDP 2(C9 H14 N2 O12 P2) FORMUL 4 2XN 2(C20 H26 N6 O4 S3) FORMUL 7 HOH *170(H2 O) HELIX 1 1 GLY A 33 GLN A 43 1 11 HELIX 2 2 GLU A 53 SER A 59 1 7 HELIX 3 3 THR A 72 LYS A 88 1 17 HELIX 4 4 LYS A 88 GLY A 114 1 27 HELIX 5 5 SER A 129 ILE A 136 1 8 HELIX 6 6 ILE A 136 SER A 144 1 9 HELIX 7 7 ASN A 148 ASN A 163 1 16 HELIX 8 8 GLY A 167 GLU A 171 5 5 HELIX 9 9 THR A 181 GLY A 193 1 13 HELIX 10 10 PRO A 201 LEU A 217 1 17 HELIX 11 11 PHE A 225 GLU A 230 5 6 HELIX 12 12 TYR A 246 SER A 258 1 13 HELIX 13 13 GLY B 33 SER B 45 1 13 HELIX 14 14 GLU B 53 SER B 59 1 7 HELIX 15 15 THR B 72 LYS B 88 1 17 HELIX 16 16 LYS B 88 LYS B 115 1 28 HELIX 17 17 SER B 129 ILE B 136 1 8 HELIX 18 18 ILE B 136 SER B 144 1 9 HELIX 19 19 ASN B 148 ASN B 163 1 16 HELIX 20 20 THR B 181 GLY B 193 1 13 HELIX 21 21 GLU B 196 ILE B 200 5 5 HELIX 22 22 PRO B 201 LEU B 217 1 17 HELIX 23 23 ASP B 226 VAL B 231 5 6 HELIX 24 24 TYR B 246 SER B 258 1 13 SHEET 1 A 5 TRP A 48 VAL A 51 0 SHEET 2 A 5 VAL A 123 GLU A 127 1 O PHE A 125 N GLU A 49 SHEET 3 A 5 LYS A 22 GLU A 27 1 N LYS A 22 O LEU A 124 SHEET 4 A 5 GLY A 174 GLN A 179 1 O ILE A 176 N SER A 25 SHEET 5 A 5 ILE A 233 ASP A 237 1 O LEU A 234 N TYR A 177 SHEET 1 B 5 TRP B 48 VAL B 51 0 SHEET 2 B 5 VAL B 123 GLU B 127 1 O PHE B 125 N GLU B 49 SHEET 3 B 5 LYS B 22 GLU B 27 1 N ILE B 26 O PHE B 126 SHEET 4 B 5 GLY B 174 GLN B 179 1 O ILE B 176 N SER B 25 SHEET 5 B 5 ILE B 233 ASP B 237 1 O LEU B 234 N ILE B 175 SITE 1 AC1 12 ALA A 31 ALA A 32 GLY A 33 LYS A 34 SITE 2 AC1 12 SER A 35 THR A 36 ARG A 188 ARG A 192 SITE 3 AC1 12 ASP A 241 PHE A 242 HOH A 429 HOH A 432 SITE 1 AC2 16 ILE A 30 GLU A 53 VAL A 55 LEU A 82 SITE 2 AC2 16 TYR A 86 PRO A 89 GLN A 97 ARG A 128 SITE 3 AC2 16 ASP A 133 PHE A 137 ASN A 140 LEU A 141 SITE 4 AC2 16 SER A 144 TYR A 204 LYS A 207 HOH A 428 SITE 1 AC3 13 ALA B 31 ALA B 32 GLY B 33 LYS B 34 SITE 2 AC3 13 SER B 35 THR B 36 ARG B 188 ARG B 192 SITE 3 AC3 13 ASP B 241 PHE B 242 LYS B 243 HOH B 436 SITE 4 AC3 13 HOH B 440 SITE 1 AC4 12 GLU B 53 LEU B 82 TYR B 86 PRO B 89 SITE 2 AC4 12 PHE B 96 GLN B 97 ARG B 128 ASP B 133 SITE 3 AC4 12 PHE B 137 SER B 144 TYR B 204 HOH B 453 CRYST1 68.782 68.782 121.278 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014539 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014539 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008246 0.00000 MASTER 444 0 4 24 10 0 14 6 0 0 0 44 END