HEADER HYDROLASE 17-MAR-14 4PVI TITLE CRYSTAL STRUCTURE OF GH62 HYDROLASE IN COMPLEX WITH XYLOTRIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GH62 HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCYTALIDIUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 85995; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ARABINOFURANOSIDASE, ARABINOFURANOHYDROLASE, GH62 HYDROLASE, FUNGAL KEYWDS 2 GENOMICS, ARABINOXYLAN, LIGNOCELLULOSE DEGRADATION, XYLOTRIOSE, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,A.P.KAUR,X.XU,H.CUI,A.SAVCHENKO REVDAT 2 29-JUL-20 4PVI 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 FORMUL LINK SITE ATOM REVDAT 1 24-SEP-14 4PVI 0 JRNL AUTH A.P.KAUR,B.NOCEK,X.XU,M.J.LOWDEN,J.F.LEYVA,P.J.STOGIOS, JRNL AUTH 2 H.CUI,R.D.LEO,J.POWLOWSKI,A.TSANG,A.SAVCHENKO JRNL TITL CRYSTAL STRUCTURE OF GH62 HYDROLASE IN COMPLEX WITH JRNL TITL 2 XYLOTRIOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.610 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.1 REMARK 3 NUMBER OF REFLECTIONS : 68294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.7162 - 4.3180 0.73 3350 213 0.1204 0.1238 REMARK 3 2 4.3180 - 3.4307 0.70 3297 123 0.1109 0.1397 REMARK 3 3 3.4307 - 2.9980 0.72 3330 191 0.1165 0.1674 REMARK 3 4 2.9980 - 2.7243 0.74 3376 208 0.1245 0.1584 REMARK 3 5 2.7243 - 2.5293 0.74 3485 187 0.1244 0.1643 REMARK 3 6 2.5293 - 2.3803 0.73 3370 185 0.1229 0.1493 REMARK 3 7 2.3803 - 2.2612 0.71 3285 157 0.1202 0.1630 REMARK 3 8 2.2612 - 2.1628 0.65 3042 147 0.1256 0.1616 REMARK 3 9 2.1628 - 2.0796 0.59 2724 145 0.1266 0.1590 REMARK 3 10 2.0796 - 2.0079 0.57 2683 126 0.1335 0.1587 REMARK 3 11 2.0079 - 1.9451 0.53 2412 132 0.1330 0.1557 REMARK 3 12 1.9451 - 1.8896 0.51 2367 146 0.1399 0.1761 REMARK 3 13 1.8896 - 1.8398 0.49 2244 122 0.1369 0.1497 REMARK 3 14 1.8398 - 1.7950 0.49 2282 119 0.1389 0.1847 REMARK 3 15 1.7950 - 1.7542 0.49 2277 126 0.1434 0.2132 REMARK 3 16 1.7542 - 1.7169 0.49 2324 101 0.1481 0.1732 REMARK 3 17 1.7169 - 1.6825 0.49 2299 114 0.1520 0.1863 REMARK 3 18 1.6825 - 1.6508 0.49 2265 116 0.1538 0.1743 REMARK 3 19 1.6508 - 1.6213 0.49 2342 104 0.1552 0.1615 REMARK 3 20 1.6213 - 1.5938 0.49 2235 126 0.1599 0.1961 REMARK 3 21 1.5938 - 1.5681 0.49 2323 120 0.1705 0.2032 REMARK 3 22 1.5681 - 1.5440 0.49 2230 141 0.1844 0.2053 REMARK 3 23 1.5440 - 1.5213 0.47 2199 96 0.1913 0.2489 REMARK 3 24 1.5213 - 1.4999 0.39 1820 111 0.1954 0.2330 REMARK 3 25 1.4999 - 1.4796 0.28 1289 88 0.1994 0.2066 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2819 REMARK 3 ANGLE : 1.507 3876 REMARK 3 CHIRALITY : 0.134 409 REMARK 3 PLANARITY : 0.008 503 REMARK 3 DIHEDRAL : 21.501 1055 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -7 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4337 -24.0659 -5.7023 REMARK 3 T TENSOR REMARK 3 T11: 0.1007 T22: 0.0774 REMARK 3 T33: 0.1088 T12: 0.0091 REMARK 3 T13: 0.0313 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.1837 L22: 0.3515 REMARK 3 L33: 0.2600 L12: -0.1518 REMARK 3 L13: -0.0208 L23: 0.0027 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: 0.0208 S13: -0.0033 REMARK 3 S21: -0.1349 S22: -0.0040 S23: -0.1820 REMARK 3 S31: 0.0206 S32: 0.0578 S33: 0.0825 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0476 -9.5938 -0.6090 REMARK 3 T TENSOR REMARK 3 T11: 0.1168 T22: 0.0782 REMARK 3 T33: 0.1013 T12: -0.0062 REMARK 3 T13: 0.0077 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.2128 L22: 0.3306 REMARK 3 L33: 0.1302 L12: -0.0944 REMARK 3 L13: 0.0111 L23: 0.0755 REMARK 3 S TENSOR REMARK 3 S11: 0.0392 S12: -0.0271 S13: 0.0765 REMARK 3 S21: -0.0611 S22: 0.0010 S23: -0.0713 REMARK 3 S31: -0.0538 S32: 0.0074 S33: 0.0153 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5869 -16.4890 5.0341 REMARK 3 T TENSOR REMARK 3 T11: 0.0871 T22: 0.0817 REMARK 3 T33: 0.0679 T12: 0.0005 REMARK 3 T13: -0.0089 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.0971 L22: 0.3515 REMARK 3 L33: 0.0715 L12: 0.0170 REMARK 3 L13: -0.0583 L23: 0.1474 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: -0.0137 S13: 0.0157 REMARK 3 S21: -0.0314 S22: 0.0085 S23: 0.0767 REMARK 3 S31: 0.0190 S32: -0.0294 S33: 0.0168 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1168 -30.2715 5.3913 REMARK 3 T TENSOR REMARK 3 T11: 0.1059 T22: 0.0857 REMARK 3 T33: 0.0922 T12: 0.0003 REMARK 3 T13: -0.0145 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.0820 L22: 0.1696 REMARK 3 L33: 0.1030 L12: 0.0410 REMARK 3 L13: -0.1164 L23: -0.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.0501 S12: -0.0105 S13: -0.0922 REMARK 3 S21: 0.0103 S22: 0.0542 S23: 0.0172 REMARK 3 S31: 0.0457 S32: -0.0012 S33: -0.0050 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0917 -31.0118 6.9807 REMARK 3 T TENSOR REMARK 3 T11: 0.1116 T22: 0.0937 REMARK 3 T33: 0.1094 T12: -0.0005 REMARK 3 T13: 0.0027 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.0344 L22: 0.0470 REMARK 3 L33: 0.0138 L12: 0.0663 REMARK 3 L13: 0.0169 L23: -0.0006 REMARK 3 S TENSOR REMARK 3 S11: -0.0447 S12: -0.0826 S13: 0.0022 REMARK 3 S21: 0.0244 S22: 0.0894 S23: 0.0797 REMARK 3 S31: 0.0233 S32: -0.0313 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 258 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9203 -38.3432 3.1858 REMARK 3 T TENSOR REMARK 3 T11: 0.1249 T22: 0.1175 REMARK 3 T33: 0.1460 T12: 0.0249 REMARK 3 T13: 0.0077 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.0150 L22: 0.0169 REMARK 3 L33: 0.0170 L12: 0.0121 REMARK 3 L13: 0.0065 L23: -0.0064 REMARK 3 S TENSOR REMARK 3 S11: -0.0206 S12: 0.0742 S13: -0.0115 REMARK 3 S21: -0.0669 S22: 0.1250 S23: -0.1798 REMARK 3 S31: 0.1100 S32: 0.0941 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 274 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4817 -26.3637 -8.4198 REMARK 3 T TENSOR REMARK 3 T11: 0.1580 T22: 0.0890 REMARK 3 T33: 0.0801 T12: 0.0068 REMARK 3 T13: -0.0035 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.0186 L22: 0.0031 REMARK 3 L33: 0.0320 L12: 0.0134 REMARK 3 L13: -0.0381 L23: -0.0298 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: 0.0450 S13: 0.0349 REMARK 3 S21: -0.1278 S22: 0.0049 S23: -0.0131 REMARK 3 S31: 0.0268 S32: 0.0315 S33: 0.0031 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1914 -28.9511 3.8750 REMARK 3 T TENSOR REMARK 3 T11: 0.1113 T22: 0.1144 REMARK 3 T33: 0.1429 T12: 0.0089 REMARK 3 T13: -0.0131 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.0507 L22: 0.0863 REMARK 3 L33: 0.0726 L12: 0.0413 REMARK 3 L13: -0.0805 L23: -0.0685 REMARK 3 S TENSOR REMARK 3 S11: 0.0677 S12: -0.0561 S13: -0.1238 REMARK 3 S21: 0.0294 S22: -0.0550 S23: -0.1954 REMARK 3 S31: 0.0537 S32: 0.0237 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000085270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 23.713 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.02500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 4PVA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M KH2PO4, 20% PEG3350, 2 MM CACL2, REMARK 280 20 MM XYLOTRIOSE , PH 8.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.69967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.39933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -7 CG CD OE1 OE2 REMARK 470 LYS A 184 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1171 O HOH A 1186 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A -6 48.88 -89.47 REMARK 500 ASN A 78 -159.01 -148.35 REMARK 500 ALA A 110 68.72 66.05 REMARK 500 ASP A 171 75.09 68.57 REMARK 500 ASN A 195 25.35 -144.13 REMARK 500 GLU A 230 -169.76 -172.78 REMARK 500 LEU A 276 -77.48 -110.60 REMARK 500 HIS A 303 87.21 9.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PVA RELATED DB: PDB DBREF 4PVI A -21 350 PDB 4PVI 4PVI -21 350 SEQRES 1 A 342 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 342 ARG GLU ASN LEU TYR PHE GLN GLY SER SER TRP LYS TRP SEQRES 3 A 342 VAL SER THR GLY PRO LEU VAL PHE PRO LYS ASN ASP GLU SEQRES 4 A 342 ARG ASN ILE ALA GLY ILE LYS ASP PRO THR ALA VAL LEU SEQRES 5 A 342 ILE ASN GLY THR TYR HIS VAL PHE ALA SER THR ALA LYS SEQRES 6 A 342 SER GLU GLY TYR ASN MET VAL TYR PHE ASN PHE THR ASP SEQRES 7 A 342 PHE ALA GLU ALA ASN ASN ALA PRO PHE TYR TYR LEU ASP SEQRES 8 A 342 GLN ALA PRO LEU GLY TYR GLY TYR ARG ALA ALA PRO GLN SEQRES 9 A 342 VAL PHE TYR PHE GLU PRO HIS LYS LEU TRP TYR LEU VAL SEQRES 10 A 342 TYR GLN ASN GLY ASN ALA ALA TYR SER THR ASN PRO ASP SEQRES 11 A 342 ILE ASN ASP PRO SER LYS TRP THR ALA PRO GLU VAL PHE SEQRES 12 A 342 TYR PRO ASN GLY MET PRO LYS ILE ILE ALA ASP ASN ILE SEQRES 13 A 342 GLY ASN GLY TYR TRP VAL ASP MET TRP VAL VAL CYS ASP SEQRES 14 A 342 ASP GLU GLU ASP PRO ASN LYS ALA LEU CYS HIS LEU PHE SEQRES 15 A 342 SER SER ASP ASP ASN GLY HIS LEU TYR ARG SER GLN THR SEQRES 16 A 342 THR LEU ALA GLN PHE PRO ARG GLY MET SER GLU PRO GLU SEQRES 17 A 342 ILE VAL LEU GLN ASP THR GLN ASN ILE TYR ALA LEU TRP SEQRES 18 A 342 GLU ALA ALA CYS ILE TYR ARG ILE LYS GLY ALA GLU GLY SEQRES 19 A 342 THR GLN LYS TYR LEU LEU LEU VAL GLU ALA ILE GLY GLN SEQRES 20 A 342 GLU GLY HIS ARG TYR PHE ARG SER TRP THR SER ASP ARG SEQRES 21 A 342 ILE ASP GLY GLN TRP ILE PRO LEU ALA ASP THR GLU ALA SEQRES 22 A 342 ASN PRO TRP ALA GLY GLU ALA ASN VAL VAL PHE GLU GLY SEQRES 23 A 342 GLN LYS TRP THR LYS SER ILE SER HIS GLY GLU VAL ILE SEQRES 24 A 342 ARG THR LEU THR ASP GLN THR LEU THR LEU ASP LEU SER SEQRES 25 A 342 GLU PRO ILE GLN PHE LEU TYR GLN GLY VAL ASP PRO ASN SEQRES 26 A 342 ALA GLN THR GLU TYR ASN ALA LEU PRO TRP ARG LEU GLY SEQRES 27 A 342 LEU ILE THR GLN HET XYP B 1 10 HET XYP B 2 9 HET XYP B 3 9 HET PO4 A 602 5 HET PO4 A 603 5 HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM PO4 PHOSPHATE ION FORMUL 2 XYP 3(C5 H10 O5) FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *515(H2 O) HELIX 1 1 ASP A 86 ALA A 93 5 8 HELIX 2 2 ASP A 99 ALA A 101 5 3 HELIX 3 3 GLU A 117 LYS A 120 5 4 HELIX 4 4 ASP A 141 TRP A 145 5 5 HELIX 5 5 PRO A 157 ILE A 164 1 8 HELIX 6 6 ASN A 224 TRP A 229 5 6 HELIX 7 7 GLY A 286 ALA A 288 5 3 HELIX 8 8 GLU A 337 LEU A 341 5 5 SHEET 1 A 5 VAL A 290 PHE A 292 0 SHEET 2 A 5 TRP A 34 SER A 36 1 N SER A 36 O VAL A 291 SHEET 3 A 5 ARG A 344 THR A 349 -1 O THR A 349 N VAL A 35 SHEET 4 A 5 GLN A 324 GLY A 329 -1 N PHE A 325 O ILE A 348 SHEET 5 A 5 SER A 302 VAL A 306 -1 N GLU A 305 O LEU A 326 SHEET 1 B 4 GLY A 52 ILE A 61 0 SHEET 2 B 4 THR A 64 LYS A 73 -1 O HIS A 66 N VAL A 59 SHEET 3 B 4 GLY A 76 PHE A 84 -1 O PHE A 82 N VAL A 67 SHEET 4 B 4 TYR A 96 TYR A 97 -1 O TYR A 96 N TYR A 81 SHEET 1 C 4 ALA A 109 PHE A 116 0 SHEET 2 C 4 LEU A 121 GLN A 127 -1 O TYR A 123 N PHE A 114 SHEET 3 C 4 ALA A 131 ASN A 136 -1 O ALA A 132 N TYR A 126 SHEET 4 C 4 GLU A 149 VAL A 150 -1 O GLU A 149 N TYR A 133 SHEET 1 D 4 VAL A 170 CYS A 176 0 SHEET 2 D 4 LEU A 186 SER A 192 -1 O PHE A 190 N TRP A 173 SHEET 3 D 4 HIS A 197 THR A 204 -1 O THR A 203 N CYS A 187 SHEET 4 D 4 GLU A 216 GLN A 220 -1 O VAL A 218 N LEU A 198 SHEET 1 E 5 ILE A 274 PRO A 275 0 SHEET 2 E 5 ARG A 259 SER A 266 -1 N THR A 265 O ILE A 274 SHEET 3 E 5 TYR A 246 ILE A 253 -1 N ALA A 252 O TYR A 260 SHEET 4 E 5 GLU A 230 ILE A 237 -1 N CYS A 233 O LEU A 249 SHEET 5 E 5 THR A 316 LEU A 317 1 O LEU A 317 N ARG A 236 LINK O4 XYP B 1 C1 XYP B 2 1555 1555 1.44 LINK O4 XYP B 2 C1 XYP B 3 1555 1555 1.44 CISPEP 1 PHE A 208 PRO A 209 0 6.81 CRYST1 72.445 72.445 62.099 90.00 90.00 120.00 P 31 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013804 0.007969 0.000000 0.00000 SCALE2 0.000000 0.015939 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016103 0.00000 MASTER 398 0 5 8 22 0 0 6 0 0 0 27 END