HEADER OXIDOREDUCTASE 02-MAY-14 4PGK TITLE INSIGHTS INTO SUBSTRATE AND METAL BINDING FROM THE CRYSTAL STRUCTURE TITLE 2 OF CYANOBACTERIAL ALDEHYDE DEFORMYLATING OXYGENASE WITH SUBSTRATE TITLE 3 BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDEHYDE DECARBONYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-243; COMPND 5 SYNONYM: AD,FATTY ALDEHYDE DECARBONYLASE; COMPND 6 EC: 4.1.99.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROCHLOROCOCCUS MARINUS; SOURCE 3 ORGANISM_TAXID: 74547; SOURCE 4 STRAIN: MIT 9313; SOURCE 5 GENE: PMT_1231; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NON-HEME DI-IRON PROTEIN, HYDROCARBON PRODUCTION, ALPHA-HELIX, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.C.BUER,B.PAUL,D.DAS,J.A.STUCKEY,E.N.G.MARSH REVDAT 2 22-NOV-17 4PGK 1 SOURCE REMARK REVDAT 1 24-DEC-14 4PGK 0 JRNL AUTH B.C.BUER,B.PAUL,D.DAS,J.A.STUCKEY,E.N.MARSH JRNL TITL INSIGHTS INTO SUBSTRATE AND METAL BINDING FROM THE CRYSTAL JRNL TITL 2 STRUCTURE OF CYANOBACTERIAL ALDEHYDE DEFORMYLATING OXYGENASE JRNL TITL 3 WITH SUBSTRATE BOUND. JRNL REF ACS CHEM.BIOL. V. 9 2584 2014 JRNL REFN ESSN 1554-8937 JRNL PMID 25222710 JRNL DOI 10.1021/CB500343J REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 995 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2784 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2307 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2628 REMARK 3 BIN R VALUE (WORKING SET) : 0.2282 REMARK 3 BIN FREE R VALUE : 0.2727 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 156 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1732 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.89210 REMARK 3 B22 (A**2) : 2.89210 REMARK 3 B33 (A**2) : -5.78410 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.334 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.211 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.159 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.200 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.156 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1949 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2636 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 687 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 56 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 286 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1949 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 256 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2374 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.02 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.47 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -20.2646 2.4129 -9.6570 REMARK 3 T TENSOR REMARK 3 T11: -0.0250 T22: -0.1175 REMARK 3 T33: -0.0545 T12: -0.0162 REMARK 3 T13: -0.0437 T23: 0.0604 REMARK 3 L TENSOR REMARK 3 L11: 1.1716 L22: 1.6156 REMARK 3 L33: 1.0505 L12: -0.2117 REMARK 3 L13: -0.3839 L23: -0.2333 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: -0.0330 S13: -0.0201 REMARK 3 S21: 0.0525 S22: 0.0114 S23: 0.0372 REMARK 3 S31: -0.0348 S32: 0.0037 S33: -0.0019 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PGK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : SI[111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19412 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 22.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4TW3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.3 M NACL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.48000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.67000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.67000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.72000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.67000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.67000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.24000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.67000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.67000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.72000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.67000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.67000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.24000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.48000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 MET A 6 REMARK 465 PRO A 7 REMARK 465 VAL A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 VAL A 11 REMARK 465 LEU A 12 REMARK 465 ASP A 13 REMARK 465 SER A 14 REMARK 465 THR A 15 REMARK 465 VAL A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 GLU A 20 REMARK 465 VAL A 242 REMARK 465 SER A 243 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 71 NZ REMARK 470 LYS A 148 CD CE NZ REMARK 470 LYS A 155 CD CE NZ REMARK 470 TYR A 158 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 192 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 157 CB GLU A 157 CG 0.498 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 157 CA - CB - CG ANGL. DEV. = 20.9 DEGREES REMARK 500 GLU A 157 CB - CG - CD ANGL. DEV. = 31.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 125 -67.02 -106.57 REMARK 500 LYS A 155 -70.80 -47.30 REMARK 500 LYS A 155 32.79 -74.90 REMARK 500 ASP A 156 20.96 -75.03 REMARK 500 ASP A 156 -32.07 -162.26 REMARK 500 GLU A 157 -45.82 -27.47 REMARK 500 GLN A 205 30.09 71.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 45 OE1 REMARK 620 2 GLU A 45 OE2 54.4 REMARK 620 3 GLU A 73 OE1 89.0 142.5 REMARK 620 4 GLU A 157 OE2 157.7 105.1 109.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 52 OH REMARK 620 2 GLU A 73 OE2 66.2 REMARK 620 3 GLU A 128 OE1 108.2 160.8 REMARK 620 4 GLU A 128 OE2 58.7 107.9 56.7 REMARK 620 5 HIS A 160 ND1 53.8 90.1 101.1 91.8 REMARK 620 6 Y69 A 303 OAB 137.1 123.2 47.6 80.0 146.6 REMARK 620 7 Y69 A 303 OAB 103.0 77.5 86.4 73.7 156.7 50.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Y69 A 303 DBREF 4PGK A 1 243 UNP Q7V6D4 ALDEC_PROMM 1 243 SEQADV 4PGK GLY A 0 UNP Q7V6D4 EXPRESSION TAG SEQADV 4PGK LYS A 90 UNP Q7V6D4 GLU 90 ENGINEERED MUTATION SEQADV 4PGK LEU A 191 UNP Q7V6D4 ARG 191 ENGINEERED MUTATION SEQRES 1 A 244 GLY MET PRO THR LEU GLU MET PRO VAL ALA ALA VAL LEU SEQRES 2 A 244 ASP SER THR VAL GLY SER SER GLU ALA LEU PRO ASP PHE SEQRES 3 A 244 THR SER ASP ARG TYR LYS ASP ALA TYR SER ARG ILE ASN SEQRES 4 A 244 ALA ILE VAL ILE GLU GLY GLU GLN GLU ALA HIS ASP ASN SEQRES 5 A 244 TYR ILE ALA ILE GLY THR LEU LEU PRO ASP HIS VAL GLU SEQRES 6 A 244 GLU LEU LYS ARG LEU ALA LYS MET GLU MET ARG HIS LYS SEQRES 7 A 244 LYS GLY PHE THR ALA CYS GLY LYS ASN LEU GLY VAL LYS SEQRES 8 A 244 ALA ASP MET ASP PHE ALA ARG GLU PHE PHE ALA PRO LEU SEQRES 9 A 244 ARG ASP ASN PHE GLN THR ALA LEU GLY GLN GLY LYS THR SEQRES 10 A 244 PRO THR CYS LEU LEU ILE GLN ALA LEU LEU ILE GLU ALA SEQRES 11 A 244 PHE ALA ILE SER ALA TYR HIS THR TYR ILE PRO VAL SER SEQRES 12 A 244 ASP PRO PHE ALA ARG LYS ILE THR GLU GLY VAL VAL LYS SEQRES 13 A 244 ASP GLU TYR THR HIS LEU ASN TYR GLY GLU ALA TRP LEU SEQRES 14 A 244 LYS ALA ASN LEU GLU SER CYS ARG GLU GLU LEU LEU GLU SEQRES 15 A 244 ALA ASN ARG GLU ASN LEU PRO LEU ILE LEU ARG MET LEU SEQRES 16 A 244 ASP GLN VAL ALA GLY ASP ALA ALA VAL LEU GLN MET ASP SEQRES 17 A 244 LYS GLU ASP LEU ILE GLU ASP PHE LEU ILE ALA TYR GLN SEQRES 18 A 244 GLU SER LEU THR GLU ILE GLY PHE ASN THR ARG GLU ILE SEQRES 19 A 244 THR ARG MET ALA ALA ALA ALA LEU VAL SER HET FE A 301 1 HET FE A 302 1 HET Y69 A 303 42 HETNAM FE FE (III) ION HETNAM Y69 11-[2-(2-ETHOXYETHOXY)ETHOXY]UNDECANAL FORMUL 2 FE 2(FE 3+) FORMUL 4 Y69 C17 H34 O4 FORMUL 5 HOH *86(H2 O) HELIX 1 AA1 SER A 27 LEU A 59 1 33 HELIX 2 AA2 HIS A 62 LEU A 87 1 26 HELIX 3 AA3 ASP A 92 GLN A 113 1 22 HELIX 4 AA4 LYS A 115 LEU A 125 1 11 HELIX 5 AA5 LEU A 125 ILE A 139 1 15 HELIX 6 AA6 PRO A 140 SER A 142 5 3 HELIX 7 AA7 ASP A 143 LEU A 204 1 62 HELIX 8 AA8 ASP A 207 GLY A 227 1 21 HELIX 9 AA9 ASN A 229 ALA A 238 1 10 HELIX 10 AB1 ALA A 239 LEU A 241 5 3 LINK OE1 GLU A 45 FE FE A 301 1555 1555 2.10 LINK OE2 GLU A 45 FE FE A 301 1555 1555 2.61 LINK OH BTYR A 52 FE FE A 302 1555 1555 2.78 LINK OE1 GLU A 73 FE FE A 301 1555 1555 2.15 LINK OE2 GLU A 73 FE FE A 302 1555 1555 2.06 LINK OE1AGLU A 128 FE FE A 302 1555 1555 2.38 LINK OE2AGLU A 128 FE FE A 302 1555 1555 2.26 LINK OE2 GLU A 157 FE FE A 301 1555 1555 2.06 LINK ND1AHIS A 160 FE FE A 302 1555 1555 2.39 LINK FE FE A 302 OABBY69 A 303 1555 1555 1.99 LINK FE FE A 302 OABAY69 A 303 1555 1555 2.50 SITE 1 AC1 6 GLU A 45 GLU A 73 HIS A 76 GLU A 157 SITE 2 AC1 6 FE A 302 Y69 A 303 SITE 1 AC2 7 TYR A 52 GLU A 73 GLU A 128 GLU A 157 SITE 2 AC2 7 HIS A 160 FE A 301 Y69 A 303 SITE 1 AC3 24 TYR A 34 ILE A 37 ASN A 38 ILE A 40 SITE 2 AC3 24 VAL A 41 GLY A 44 GLU A 45 ALA A 48 SITE 3 AC3 24 GLU A 73 PHE A 80 GLN A 123 ILE A 127 SITE 4 AC3 24 GLU A 128 PHE A 130 ALA A 134 TYR A 135 SITE 5 AC3 24 TYR A 138 GLU A 157 ILE A 190 LEU A 194 SITE 6 AC3 24 LEU A 211 PHE A 215 FE A 301 FE A 302 CRYST1 77.340 77.340 116.960 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012930 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008550 0.00000 MASTER 388 0 3 10 0 0 10 6 0 0 0 19 END