HEADER IMMUNE SYSTEM/PEPTIDE 01-MAY-14 4PG9 TITLE MHC CLASS I IN COMPLEX WITH SENDAI VIRUS NUCLEOPROTEIN PEPTIDE TITLE 2 FAPGNYPAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEAVY CHAIN, UNP RESIDUES 22-299; COMPND 5 SYNONYM: H-2K(B); COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 21-119; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: SENDAI VIRUS NUCLEOPROTEIN; COMPND 14 CHAIN: C; COMPND 15 FRAGMENT: PEPTIDE 324-332; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-K1, H2-K; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: B2M; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET3A; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 ORGANISM_SCIENTIFIC: SENDAI VIRUS; SOURCE 24 ORGANISM_TAXID: 11191; SOURCE 25 OTHER_DETAILS: SOLID PHASE PEPTIDE SYNTHESIS KEYWDS IMMUNE SYSTEM, IMMUNOGLOBULIN DOMAIN, IMMUNE RESPONSE, IMMUNE SYSTEM- KEYWDS 2 PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.CELIE,R.P.JOOSTEN,A.PERRAKIS,J.NEEFJES REVDAT 6 08-JAN-20 4PG9 1 REMARK REVDAT 5 22-NOV-17 4PG9 1 SOURCE JRNL REMARK REVDAT 4 11-FEB-15 4PG9 1 JRNL REVDAT 3 04-FEB-15 4PG9 1 JRNL REVDAT 2 21-JAN-15 4PG9 1 JRNL REVDAT 1 07-JAN-15 4PG9 0 JRNL AUTH M.A.GARSTKA,A.FISH,P.H.CELIE,R.P.JOOSTEN,G.M.JANSSEN, JRNL AUTH 2 I.BERLIN,R.HOPPES,M.STADNIK,L.JANSSEN,H.OVAA,P.A.VAN VEELEN, JRNL AUTH 3 A.PERRAKIS,J.NEEFJES JRNL TITL THE FIRST STEP OF PEPTIDE SELECTION IN ANTIGEN PRESENTATION JRNL TITL 2 BY MHC CLASS I MOLECULES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 1505 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 25605945 JRNL DOI 10.1073/PNAS.1416543112 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0030 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 21436 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1101 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1477 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3136 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.16000 REMARK 3 B22 (A**2) : 0.56000 REMARK 3 B33 (A**2) : 0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.347 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.246 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.356 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3295 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3022 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4464 ; 1.010 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6964 ; 0.682 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 385 ; 5.747 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;30.404 ;23.533 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 532 ;12.453 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;14.439 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 461 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3684 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 783 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1537 ; 0.747 ; 0.932 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1536 ; 0.747 ; 0.932 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1917 ; 1.303 ; 1.392 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 276 REMARK 3 ORIGIN FOR THE GROUP (A): 41.8297 18.4740 -0.4157 REMARK 3 T TENSOR REMARK 3 T11: 0.1552 T22: 0.0231 REMARK 3 T33: 0.1303 T12: 0.0127 REMARK 3 T13: -0.0159 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 1.3549 L22: 1.0858 REMARK 3 L33: 0.8743 L12: 0.2846 REMARK 3 L13: -0.5963 L23: -0.3594 REMARK 3 S TENSOR REMARK 3 S11: -0.0579 S12: 0.1204 S13: -0.0808 REMARK 3 S21: -0.0204 S22: 0.0267 S23: 0.1255 REMARK 3 S31: 0.0609 S32: -0.0531 S33: 0.0313 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): 29.4279 29.4429 7.0186 REMARK 3 T TENSOR REMARK 3 T11: 0.1275 T22: 0.0117 REMARK 3 T33: 0.1386 T12: 0.0128 REMARK 3 T13: -0.0440 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 4.1723 L22: 1.5952 REMARK 3 L33: 5.1430 L12: -0.8475 REMARK 3 L13: -2.9188 L23: -0.1769 REMARK 3 S TENSOR REMARK 3 S11: -0.0519 S12: -0.0221 S13: 0.1711 REMARK 3 S21: 0.0428 S22: 0.0969 S23: 0.0220 REMARK 3 S31: -0.2732 S32: -0.1508 S33: -0.0451 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 9 REMARK 3 ORIGIN FOR THE GROUP (A): 58.6005 25.2295 -5.1380 REMARK 3 T TENSOR REMARK 3 T11: 0.2026 T22: 0.1186 REMARK 3 T33: 0.1835 T12: 0.0208 REMARK 3 T13: 0.0560 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 3.2804 L22: 10.0488 REMARK 3 L33: 21.7127 L12: 2.4998 REMARK 3 L13: -0.9566 L23: -13.9405 REMARK 3 S TENSOR REMARK 3 S11: -0.0412 S12: 0.1489 S13: -0.3446 REMARK 3 S21: -0.1301 S22: -0.8361 S23: -0.7501 REMARK 3 S31: 0.1691 S32: 1.4947 S33: 0.8773 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4PG9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201343. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21454 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : 0.12700 REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48800 REMARK 200 R SYM FOR SHELL (I) : 0.48800 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3P9L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM/POTASSIUM PHOSPHATE BUFFER REMARK 280 1.9M, MPD 1%, GLYCEROL (CRYOPROTECTION), PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.86050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.26650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.86050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.26650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS THE SAME AS ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -25 REMARK 465 GLY A -24 REMARK 465 SER A -23 REMARK 465 SER A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 GLY A -13 REMARK 465 LEU A -12 REMARK 465 VAL A -11 REMARK 465 PRO A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 MET A -5 REMARK 465 LEU A -4 REMARK 465 GLU A -3 REMARK 465 ASP A -2 REMARK 465 PRO A -1 REMARK 465 MET A 0 REMARK 465 PRO A 277 REMARK 465 PRO A 278 REMARK 465 MET B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -124.85 48.51 REMARK 500 ASP A 197 41.18 36.89 REMARK 500 ILE A 225 40.22 -107.80 REMARK 500 GLN A 226 -60.89 -107.88 REMARK 500 ASP A 227 31.36 -97.84 REMARK 500 TRP B 60 -7.32 81.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PGB RELATED DB: PDB REMARK 900 RELATED ID: 4PGC RELATED DB: PDB REMARK 900 RELATED ID: 4PGD RELATED DB: PDB REMARK 900 RELATED ID: 4PGE RELATED DB: PDB DBREF 4PG9 A 1 278 UNP P01901 HA1B_MOUSE 22 299 DBREF 4PG9 B 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 4PG9 C 1 9 PDB 4PG9 4PG9 1 9 SEQADV 4PG9 MET A -25 UNP P01901 INITIATING METHIONINE SEQADV 4PG9 GLY A -24 UNP P01901 EXPRESSION TAG SEQADV 4PG9 SER A -23 UNP P01901 EXPRESSION TAG SEQADV 4PG9 SER A -22 UNP P01901 EXPRESSION TAG SEQADV 4PG9 HIS A -21 UNP P01901 EXPRESSION TAG SEQADV 4PG9 HIS A -20 UNP P01901 EXPRESSION TAG SEQADV 4PG9 HIS A -19 UNP P01901 EXPRESSION TAG SEQADV 4PG9 HIS A -18 UNP P01901 EXPRESSION TAG SEQADV 4PG9 HIS A -17 UNP P01901 EXPRESSION TAG SEQADV 4PG9 HIS A -16 UNP P01901 EXPRESSION TAG SEQADV 4PG9 SER A -15 UNP P01901 EXPRESSION TAG SEQADV 4PG9 SER A -14 UNP P01901 EXPRESSION TAG SEQADV 4PG9 GLY A -13 UNP P01901 EXPRESSION TAG SEQADV 4PG9 LEU A -12 UNP P01901 EXPRESSION TAG SEQADV 4PG9 VAL A -11 UNP P01901 EXPRESSION TAG SEQADV 4PG9 PRO A -10 UNP P01901 EXPRESSION TAG SEQADV 4PG9 ARG A -9 UNP P01901 EXPRESSION TAG SEQADV 4PG9 GLY A -8 UNP P01901 EXPRESSION TAG SEQADV 4PG9 SER A -7 UNP P01901 EXPRESSION TAG SEQADV 4PG9 HIS A -6 UNP P01901 EXPRESSION TAG SEQADV 4PG9 MET A -5 UNP P01901 EXPRESSION TAG SEQADV 4PG9 LEU A -4 UNP P01901 EXPRESSION TAG SEQADV 4PG9 GLU A -3 UNP P01901 EXPRESSION TAG SEQADV 4PG9 ASP A -2 UNP P01901 EXPRESSION TAG SEQADV 4PG9 PRO A -1 UNP P01901 EXPRESSION TAG SEQADV 4PG9 MET A 0 UNP P01901 EXPRESSION TAG SEQADV 4PG9 MET B 0 UNP P01887 INITIATING METHIONINE SEQADV 4PG9 ASP B 85 UNP P01887 ALA 105 VARIANT SEQRES 1 A 304 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 304 LEU VAL PRO ARG GLY SER HIS MET LEU GLU ASP PRO MET SEQRES 3 A 304 GLY PRO HIS SER LEU ARG TYR PHE VAL THR ALA VAL SER SEQRES 4 A 304 ARG PRO GLY LEU GLY GLU PRO ARG TYR MET GLU VAL GLY SEQRES 5 A 304 TYR VAL ASP ASP THR GLU PHE VAL ARG PHE ASP SER ASP SEQRES 6 A 304 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA ARG TRP MET SEQRES 7 A 304 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 8 A 304 LYS ALA LYS GLY ASN GLU GLN SER PHE ARG VAL ASP LEU SEQRES 9 A 304 ARG THR LEU LEU GLY TYR TYR ASN GLN SER LYS GLY GLY SEQRES 10 A 304 SER HIS THR ILE GLN VAL ILE SER GLY CYS GLU VAL GLY SEQRES 11 A 304 SER ASP GLY ARG LEU LEU ARG GLY TYR GLN GLN TYR ALA SEQRES 12 A 304 TYR ASP GLY CYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 13 A 304 LYS THR TRP THR ALA ALA ASP MET ALA ALA LEU ILE THR SEQRES 14 A 304 LYS HIS LYS TRP GLU GLN ALA GLY GLU ALA GLU ARG LEU SEQRES 15 A 304 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 16 A 304 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 17 A 304 ASP SER PRO LYS ALA HIS VAL THR HIS HIS SER ARG PRO SEQRES 18 A 304 GLU ASP LYS VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 19 A 304 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 20 A 304 GLU GLU LEU ILE GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 21 A 304 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 22 A 304 VAL VAL PRO LEU GLY LYS GLU GLN TYR TYR THR CYS HIS SEQRES 23 A 304 VAL TYR HIS GLN GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 24 A 304 TRP GLU PRO PRO PRO SEQRES 1 B 100 MET ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS SEQRES 3 B 100 TYR VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN SEQRES 4 B 100 MET LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SEQRES 5 B 100 SER ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE SEQRES 6 B 100 LEU ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR SEQRES 7 B 100 TYR ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO SEQRES 8 B 100 LYS THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 C 9 PHE ALA PRO GLY ASN TYR PRO ALA LEU HET GOL A 301 6 HET GOL A 302 6 HET GOL A 303 6 HET GOL A 304 6 HET GOL A 305 6 HET GOL B 101 6 HET GOL B 102 6 HET GOL B 103 6 HET GOL B 104 6 HET GOL C 101 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 10(C3 H8 O3) FORMUL 14 HOH *52(H2 O) HELIX 1 AA1 ALA A 49 GLU A 55 5 7 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 GLY A 151 1 15 HELIX 4 AA4 GLY A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 LEU A 180 1 6 HELIX 7 AA7 LYS A 253 GLN A 255 5 3 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N GLU A 24 O PHE A 36 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N PHE A 8 O VAL A 25 SHEET 5 AA1 8 THR A 94 VAL A 103 -1 O SER A 99 N TYR A 7 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O LEU A 110 N GLU A 102 SHEET 7 AA1 8 CYS A 121 LEU A 126 -1 O ILE A 124 N TYR A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 SER A 193 0 SHEET 2 AA2 4 LYS A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O VAL A 249 N VAL A 199 SHEET 4 AA2 4 MET A 228 LEU A 230 -1 N GLU A 229 O SER A 246 SHEET 1 AA3 4 LYS A 186 SER A 193 0 SHEET 2 AA3 4 LYS A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O VAL A 249 N VAL A 199 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 GLU A 223 0 SHEET 2 AA4 4 THR A 214 LEU A 219 -1 N LEU A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 TYR A 262 -1 O HIS A 260 N THR A 216 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 GLN B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O PHE B 62 N PHE B 30 SHEET 4 AA5 4 GLU B 50 PHE B 56 -1 N SER B 52 O LEU B 65 SHEET 1 AA6 4 LYS B 44 LYS B 45 0 SHEET 2 AA6 4 GLU B 36 LYS B 41 -1 N LYS B 41 O LYS B 44 SHEET 3 AA6 4 TYR B 78 LYS B 83 -1 O ARG B 81 N GLN B 38 SHEET 4 AA6 4 LYS B 91 TYR B 94 -1 O VAL B 93 N CYS B 80 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.07 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03 CISPEP 1 TYR A 209 PRO A 210 0 -1.50 CISPEP 2 HIS B 31 PRO B 32 0 4.10 SITE 1 AC1 2 GLU A 166 ARG A 170 SITE 1 AC2 3 ARG A 21 ILE B 37 MET B 51 SITE 1 AC3 4 GLY A 16 HIS A 191 HIS A 192 SER A 193 SITE 1 AC4 5 ARG A 48 ALA A 49 ARG A 50 ALA A 135 SITE 2 AC4 5 ALA A 136 SITE 1 AC5 11 ASP A 30 THR A 31 PRO A 235 ALA A 236 SITE 2 AC5 11 GLY A 237 ASP A 238 GLY A 239 THR A 240 SITE 3 AC5 11 PHE A 241 HOH A 438 ASP B 53 SITE 1 AC6 3 ARG A 21 PRO B 33 ILE B 35 SITE 1 AC7 7 TRP A 204 VAL B 9 TYR B 10 SER B 11 SITE 2 AC7 7 PRO B 15 TRP B 95 ASP B 96 SITE 1 AC8 2 GLU A 232 SER B 55 SITE 1 AC9 4 LYS A 186 ARG B 12 HIS B 13 PRO B 14 SITE 1 AD1 4 LEU A 156 PRO C 3 GLY C 4 ASN C 5 CRYST1 87.721 136.533 45.203 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011400 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022122 0.00000 MASTER 401 0 10 7 28 0 14 6 0 0 0 33 END