HEADER SUGAR BINDING PROTEIN 28-APR-14 4PF5 TITLE CRYSTAL STRUCTURE OF CONCANAVALIN A COMPLEXED WITH A SYNTHETIC TITLE 2 DERIVATIVE OF HIGH-MANNOSE CHAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONCANAVALIN-A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 164-281, 30-148; COMPND 5 SYNONYM: CON A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANAVALIA ENSIFORMIS; SOURCE 3 ORGANISM_COMMON: JACK BEAN; SOURCE 4 ORGANISM_TAXID: 3823 KEYWDS SUGAR BINDING PROTEIN, LECTIN, HIGH MANNOSE EXPDTA X-RAY DIFFRACTION AUTHOR P.LAFITE,R.DANIELLOU REVDAT 3 29-JUL-20 4PF5 1 REMARK LINK SITE REVDAT 2 28-JAN-15 4PF5 1 JRNL REVDAT 1 17-DEC-14 4PF5 0 JRNL AUTH M.FRANCOIS-HEUDE,A.MENDEZ-ARDOY,V.CENDRET,P.LAFITE, JRNL AUTH 2 R.DANIELLOU,C.ORTIZ MELLET,J.M.GARCIA FERNANDEZ,V.MOREAU, JRNL AUTH 3 F.DJEDAINI-PILARD JRNL TITL SYNTHESIS OF HIGH-MANNOSE OLIGOSACCHARIDE ANALOGUES THROUGH JRNL TITL 2 CLICK CHEMISTRY: TRUE FUNCTIONAL MIMICS OF THEIR NATURAL JRNL TITL 3 COUNTERPARTS AGAINST LECTINS? JRNL REF CHEMISTRY V. 21 1978 2015 JRNL REFN ISSN 0947-6539 JRNL PMID 25483029 JRNL DOI 10.1002/CHEM.201405481 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.630 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9939 - 4.9143 1.00 2512 149 0.1669 0.2025 REMARK 3 2 4.9143 - 3.9015 1.00 2439 145 0.1424 0.1673 REMARK 3 3 3.9015 - 3.4086 1.00 2398 144 0.1630 0.2270 REMARK 3 4 3.4086 - 3.0971 1.00 2404 144 0.1810 0.2549 REMARK 3 5 3.0971 - 2.8751 1.00 2367 140 0.1815 0.2240 REMARK 3 6 2.8751 - 2.7056 1.00 2394 144 0.1952 0.2339 REMARK 3 7 2.7056 - 2.5702 1.00 2384 142 0.1917 0.2430 REMARK 3 8 2.5702 - 2.4583 1.00 2378 142 0.1969 0.2667 REMARK 3 9 2.4583 - 2.3637 1.00 2360 141 0.2001 0.2670 REMARK 3 10 2.3637 - 2.2821 1.00 2384 142 0.1958 0.2323 REMARK 3 11 2.2821 - 2.2108 1.00 2361 142 0.2060 0.2519 REMARK 3 12 2.2108 - 2.1476 1.00 2370 141 0.2238 0.2878 REMARK 3 13 2.1476 - 2.0910 1.00 2381 142 0.2211 0.2705 REMARK 3 14 2.0910 - 2.0400 1.00 2360 140 0.2103 0.2891 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3755 REMARK 3 ANGLE : 1.212 5123 REMARK 3 CHIRALITY : 0.055 592 REMARK 3 PLANARITY : 0.005 658 REMARK 3 DIHEDRAL : 13.337 1307 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PF5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000200403. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 93.529 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16600 REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 0.59400 REMARK 200 R SYM FOR SHELL (I) : 0.59400 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, 1,4-DIOXANE, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 62.95050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.34449 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 60.65733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 62.95050 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 36.34449 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 60.65733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 62.95050 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 36.34449 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 60.65733 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 62.95050 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 36.34449 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 60.65733 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 62.95050 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 36.34449 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 60.65733 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 62.95050 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 36.34449 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 60.65733 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.68898 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 121.31467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 72.68898 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 121.31467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 72.68898 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 121.31467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 72.68898 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 121.31467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 72.68898 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 121.31467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 72.68898 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 121.31467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HOMO-4-MER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -72.68898 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -121.31467 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 203 CG OD1 OD2 REMARK 470 LYS B 36 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 67 O HOH A 488 2.13 REMARK 500 O HOH A 484 O HOH A 499 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 14 78.03 -106.34 REMARK 500 SER B 21 40.61 -85.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 ASP A 10 OD2 90.9 REMARK 620 3 ASP A 19 OD1 172.0 96.9 REMARK 620 4 HIS A 24 NE2 89.5 86.1 92.8 REMARK 620 5 HOH A 435 O 90.3 93.0 87.5 179.2 REMARK 620 6 HOH A 436 O 88.1 173.7 84.3 87.6 93.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 10 OD2 51.7 REMARK 620 3 TYR A 12 O 80.6 117.0 REMARK 620 4 ASN A 14 OD1 144.2 164.1 73.0 REMARK 620 5 ASP A 19 OD2 114.6 81.4 85.5 87.3 REMARK 620 6 HOH A 433 O 116.9 80.9 161.3 88.3 92.4 REMARK 620 7 HOH A 434 O 72.1 107.6 89.8 83.9 170.9 89.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 8 OE2 REMARK 620 2 ASP B 10 OD2 91.1 REMARK 620 3 ASP B 19 OD1 172.2 95.7 REMARK 620 4 HIS B 24 NE2 88.7 89.9 95.1 REMARK 620 5 HOH B 423 O 89.4 176.6 84.0 86.8 REMARK 620 6 HOH B 424 O 92.9 94.6 82.8 175.2 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD1 REMARK 620 2 ASP B 10 OD2 52.0 REMARK 620 3 TYR B 12 O 74.6 111.8 REMARK 620 4 ASN B 14 OD1 142.6 164.7 75.8 REMARK 620 5 ASP B 19 OD2 109.7 79.9 82.2 88.3 REMARK 620 6 HOH B 421 O 119.1 79.4 166.3 91.5 92.4 REMARK 620 7 HOH B 422 O 73.8 109.3 89.2 83.5 169.4 94.5 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D4K RELATED DB: PDB REMARK 900 CONA COMPLEXED WITH A TRIMANNOSIDE ANALOGUE (CRYSTALLIZED UNDER THE REMARK 900 SAME CONDITIONS). DBREF 4PF5 A 1 118 UNP P02866 CONA_CANEN 164 281 DBREF 4PF5 A 119 237 UNP P02866 CONA_CANEN 30 148 DBREF 4PF5 B 1 118 UNP P02866 CONA_CANEN 164 281 DBREF 4PF5 B 119 237 UNP P02866 CONA_CANEN 30 148 SEQRES 1 A 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 A 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 A 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 A 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 A 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 A 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 A 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 A 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 A 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 A 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 A 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 A 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 A 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 A 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 A 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 A 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 A 237 ASP ALA ASN SEQRES 1 B 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 B 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 B 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 B 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 B 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 B 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 B 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 B 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 B 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 B 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 B 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 B 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 B 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 B 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 B 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 B 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 B 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 B 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 B 237 ASP ALA ASN HET MN A 301 1 HET MN A 302 1 HET M3N A 303 18 HET EDO A 304 4 HET M3N B 301 18 HET MN B 302 1 HET MN B 303 1 HET EDO B 304 4 HETNAM MN MANGANESE (II) ION HETNAM M3N 4-(HYDROXYMETHYL)-1-(ALPHA-D-MANNOPYRANOSYL)-1H-1,2,3- HETNAM 2 M3N TRIAZOLE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MN 4(MN 2+) FORMUL 5 M3N 2(C9 H15 N3 O6) FORMUL 6 EDO 2(C2 H6 O2) FORMUL 11 HOH *229(H2 O) HELIX 1 AA1 ASN A 14 GLY A 18 5 5 HELIX 2 AA2 ASP A 80 VAL A 84 5 5 HELIX 3 AA3 THR A 226 LEU A 230 5 5 HELIX 4 AA4 ASN B 14 GLY B 18 5 5 HELIX 5 AA5 ASP B 80 VAL B 84 5 5 HELIX 6 AA6 THR B 150 GLY B 152 5 3 HELIX 7 AA7 THR B 226 LEU B 230 5 5 SHEET 1 AA1 7 LYS A 36 LYS A 39 0 SHEET 2 AA1 7 HIS A 24 ILE A 29 -1 N ILE A 25 O ALA A 38 SHEET 3 AA1 7 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 AA1 7 GLY A 209 SER A 215 -1 O ILE A 210 N LEU A 9 SHEET 5 AA1 7 TRP A 88 SER A 96 -1 N GLY A 92 O PHE A 213 SHEET 6 AA1 7 VAL A 170 PHE A 175 -1 O PHE A 175 N VAL A 91 SHEET 7 AA1 7 LEU A 140 GLY A 144 -1 N ILE A 141 O LEU A 174 SHEET 1 AA2 6 LYS A 36 LYS A 39 0 SHEET 2 AA2 6 HIS A 24 ILE A 29 -1 N ILE A 25 O ALA A 38 SHEET 3 AA2 6 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 AA2 6 GLY A 209 SER A 215 -1 O ILE A 210 N LEU A 9 SHEET 5 AA2 6 TRP A 88 SER A 96 -1 N GLY A 92 O PHE A 213 SHEET 6 AA2 6 VAL A 179 HIS A 180 -1 O VAL A 179 N VAL A 89 SHEET 1 AA312 ALA A 73 ASP A 78 0 SHEET 2 AA312 ARG A 60 SER A 66 -1 N LEU A 61 O TYR A 77 SHEET 3 AA312 VAL A 47 ASN A 55 -1 N ILE A 53 O SER A 62 SHEET 4 AA312 SER A 190 LEU A 198 -1 O ALA A 193 N ILE A 52 SHEET 5 AA312 THR A 105 LYS A 116 -1 N THR A 112 O GLU A 192 SHEET 6 AA312 THR A 123 PHE A 130 -1 O PHE A 130 N TRP A 109 SHEET 7 AA312 THR B 123 PHE B 130 -1 O HIS B 127 N HIS A 127 SHEET 8 AA312 THR B 105 SER B 117 -1 N TRP B 109 O PHE B 130 SHEET 9 AA312 ALA B 186 LEU B 198 -1 O VAL B 188 N LYS B 116 SHEET 10 AA312 VAL B 47 ASN B 55 -1 N GLY B 48 O PHE B 197 SHEET 11 AA312 ARG B 60 SER B 66 -1 O VAL B 64 N HIS B 51 SHEET 12 AA312 ALA B 73 ASP B 78 -1 O TYR B 77 N LEU B 61 SHEET 1 AA4 8 THR A 147 THR A 148 0 SHEET 2 AA4 8 LEU A 154 GLU A 155 -1 O GLU A 155 N THR A 147 SHEET 3 AA4 8 THR A 105 LYS A 116 -1 N ILE A 106 O LEU A 154 SHEET 4 AA4 8 THR A 123 PHE A 130 -1 O PHE A 130 N TRP A 109 SHEET 5 AA4 8 THR B 123 PHE B 130 -1 O HIS B 127 N HIS A 127 SHEET 6 AA4 8 THR B 105 SER B 117 -1 N TRP B 109 O PHE B 130 SHEET 7 AA4 8 LEU B 154 GLU B 155 -1 O LEU B 154 N ILE B 106 SHEET 8 AA4 8 THR B 147 THR B 148 -1 N THR B 147 O GLU B 155 SHEET 1 AA5 7 LYS B 36 LYS B 39 0 SHEET 2 AA5 7 HIS B 24 ILE B 29 -1 N ILE B 27 O LYS B 36 SHEET 3 AA5 7 ILE B 4 ASP B 10 -1 N ALA B 6 O ASP B 28 SHEET 4 AA5 7 GLY B 209 SER B 215 -1 O ILE B 210 N LEU B 9 SHEET 5 AA5 7 TRP B 88 SER B 96 -1 N SER B 94 O ALA B 211 SHEET 6 AA5 7 VAL B 170 PHE B 175 -1 O ALA B 173 N LEU B 93 SHEET 7 AA5 7 LEU B 140 GLY B 144 -1 N ILE B 141 O LEU B 174 SHEET 1 AA6 6 LYS B 36 LYS B 39 0 SHEET 2 AA6 6 HIS B 24 ILE B 29 -1 N ILE B 27 O LYS B 36 SHEET 3 AA6 6 ILE B 4 ASP B 10 -1 N ALA B 6 O ASP B 28 SHEET 4 AA6 6 GLY B 209 SER B 215 -1 O ILE B 210 N LEU B 9 SHEET 5 AA6 6 TRP B 88 SER B 96 -1 N SER B 94 O ALA B 211 SHEET 6 AA6 6 VAL B 179 HIS B 180 -1 O VAL B 179 N VAL B 89 LINK OE2 GLU A 8 MN MN A 301 1555 1555 2.34 LINK OD2 ASP A 10 MN MN A 301 1555 1555 2.17 LINK OD1 ASP A 10 MN MN A 302 1555 1555 2.47 LINK OD2 ASP A 10 MN MN A 302 1555 1555 2.51 LINK O TYR A 12 MN MN A 302 1555 1555 2.42 LINK OD1 ASN A 14 MN MN A 302 1555 1555 2.52 LINK OD1 ASP A 19 MN MN A 301 1555 1555 2.35 LINK OD2 ASP A 19 MN MN A 302 1555 1555 2.42 LINK NE2 HIS A 24 MN MN A 301 1555 1555 2.39 LINK MN MN A 301 O HOH A 435 1555 1555 2.45 LINK MN MN A 301 O HOH A 436 1555 1555 2.29 LINK MN MN A 302 O HOH A 433 1555 1555 2.47 LINK MN MN A 302 O HOH A 434 1555 1555 2.43 LINK OE2 GLU B 8 MN MN B 302 1555 1555 2.40 LINK OD2 ASP B 10 MN MN B 302 1555 1555 2.24 LINK OD1 ASP B 10 MN MN B 303 1555 1555 2.52 LINK OD2 ASP B 10 MN MN B 303 1555 1555 2.44 LINK O TYR B 12 MN MN B 303 1555 1555 2.39 LINK OD1 ASN B 14 MN MN B 303 1555 1555 2.48 LINK OD1 ASP B 19 MN MN B 302 1555 1555 2.44 LINK OD2 ASP B 19 MN MN B 303 1555 1555 2.42 LINK NE2 HIS B 24 MN MN B 302 1555 1555 2.43 LINK MN MN B 302 O HOH B 423 1555 1555 2.30 LINK MN MN B 302 O HOH B 424 1555 1555 2.40 LINK MN MN B 303 O HOH B 421 1555 1555 2.52 LINK MN MN B 303 O HOH B 422 1555 1555 2.44 CISPEP 1 ALA A 207 ASP A 208 0 4.47 CISPEP 2 ALA B 207 ASP B 208 0 2.87 CRYST1 125.901 125.901 181.972 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007943 0.004586 0.000000 0.00000 SCALE2 0.000000 0.009171 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005495 0.00000 MASTER 358 0 8 7 46 0 0 6 0 0 0 38 END