HEADER SUGAR BINDING PROTEIN 06-APR-14 4P9Y TITLE STRUCTURE OF CONA/RH4MAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONCANAVALIN-A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 164-281, 30-148; COMPND 5 SYNONYM: CON A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS LECTIN, MANNOSE, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.SAKAI,M.S.WEISS,G.CHEN REVDAT 2 22-NOV-17 4P9Y 1 SOURCE JRNL REMARK REVDAT 1 27-AUG-14 4P9Y 0 JRNL AUTH F.SAKAI,M.S.WEISS,G.CHEN JRNL TITL STRUCTURE OF CONA/RH4MAN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33322 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1086 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2387 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3618 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 128 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.81000 REMARK 3 B22 (A**2) : 3.83000 REMARK 3 B33 (A**2) : -2.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.259 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3848 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5250 ; 1.955 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 476 ; 8.015 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;38.616 ;24.937 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 580 ;17.022 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;18.912 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 592 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2910 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 237 REMARK 3 RESIDUE RANGE : A 301 A 303 REMARK 3 RESIDUE RANGE : A 422 A 425 REMARK 3 ORIGIN FOR THE GROUP (A): 9.480 15.553 29.321 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.0095 REMARK 3 T33: 0.1871 T12: 0.0096 REMARK 3 T13: -0.0032 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 2.1379 L22: 1.8356 REMARK 3 L33: 2.3819 L12: 0.2595 REMARK 3 L13: 0.9054 L23: 0.0332 REMARK 3 S TENSOR REMARK 3 S11: 0.0341 S12: -0.0679 S13: -0.1604 REMARK 3 S21: 0.0735 S22: 0.0480 S23: -0.0067 REMARK 3 S31: 0.1304 S32: -0.0244 S33: -0.0821 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 237 REMARK 3 RESIDUE RANGE : B 301 B 303 REMARK 3 RESIDUE RANGE : B 409 B 412 REMARK 3 ORIGIN FOR THE GROUP (A): -12.357 13.452 -0.202 REMARK 3 T TENSOR REMARK 3 T11: 0.1843 T22: 0.0315 REMARK 3 T33: 0.2119 T12: -0.0334 REMARK 3 T13: -0.0306 T23: 0.0417 REMARK 3 L TENSOR REMARK 3 L11: 1.6799 L22: 1.8693 REMARK 3 L33: 2.9528 L12: -0.0269 REMARK 3 L13: 0.9129 L23: 0.1508 REMARK 3 S TENSOR REMARK 3 S11: 0.0744 S12: 0.1039 S13: -0.0371 REMARK 3 S21: -0.2121 S22: 0.0422 S23: 0.0599 REMARK 3 S31: 0.0525 S32: -0.1191 S33: -0.1166 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4P9Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000200908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34408 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 39.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.680 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 46.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.0.05 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUFFER: 20 MM HEPES, 5 MM OF CACL2, REMARK 280 AND 5 MM OF MNCL2; PH = 7.2. THE CRYSTAL WAS OBTAINED BY REMARK 280 DIFFUSION METHOD IN GLASS TUBE SEQUENTIALLY PUT WITH CONA REMARK 280 SOLUTION, PURE BUFFER, AND THE LIGAND SOLUTION., PH 7.2, LIQUID REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.80000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.05500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.80000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.05500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 402 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 176 O HOH A 401 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 60 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 VAL A 64 CB - CA - C ANGL. DEV. = -15.4 DEGREES REMARK 500 VAL A 64 CG1 - CB - CG2 ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 228 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 90 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 90 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 69 18.99 57.36 REMARK 500 ASN A 118 -50.96 3.81 REMARK 500 HIS A 121 18.66 -141.25 REMARK 500 ASP A 203 154.55 -37.83 REMARK 500 ASN A 216 150.92 -49.31 REMARK 500 SER A 225 32.47 -86.24 REMARK 500 ASN B 14 77.57 -104.19 REMARK 500 LYS B 30 18.54 57.08 REMARK 500 ASN B 104 60.27 -117.16 REMARK 500 ASN B 118 -51.23 3.79 REMARK 500 HIS B 121 17.77 -148.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 ASP A 10 OD2 93.3 REMARK 620 3 ASP A 19 OD1 173.7 91.3 REMARK 620 4 HIS A 24 NE2 91.7 82.4 93.2 REMARK 620 5 HOH A 423 O 86.9 89.0 88.8 171.3 REMARK 620 6 HOH A 422 O 88.9 177.0 86.7 95.6 93.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 10 OD2 52.8 REMARK 620 3 TYR A 12 O 73.6 110.3 REMARK 620 4 ASN A 14 OD1 148.6 158.5 83.4 REMARK 620 5 ASP A 19 OD2 110.7 77.9 84.4 87.5 REMARK 620 6 HOH A 424 O 114.5 75.5 171.9 89.4 91.5 REMARK 620 7 HOH A 425 O 71.4 107.0 91.5 88.4 174.5 92.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 8 OE2 REMARK 620 2 ASP B 10 OD2 96.4 REMARK 620 3 ASP B 19 OD1 165.6 97.9 REMARK 620 4 HIS B 24 NE2 91.6 84.4 91.4 REMARK 620 5 HOH B 409 O 86.2 175.7 79.6 92.1 REMARK 620 6 HOH B 410 O 91.3 97.1 85.4 176.6 86.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD1 REMARK 620 2 ASP B 10 OD2 51.0 REMARK 620 3 TYR B 12 O 75.4 108.7 REMARK 620 4 ASN B 14 OD1 147.3 161.6 82.2 REMARK 620 5 ASP B 19 OD2 110.9 76.4 85.0 90.2 REMARK 620 6 HOH B 412 O 72.0 108.2 92.1 85.6 175.2 REMARK 620 7 HOH B 411 O 115.0 79.3 169.5 88.4 90.5 91.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2KO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2KO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P9W RELATED DB: PDB REMARK 900 RELATED ID: 4P9X RELATED DB: PDB DBREF 4P9Y A 1 118 UNP P02866 CONA_CANEN 164 281 DBREF 4P9Y A 119 237 UNP P02866 CONA_CANEN 30 148 DBREF 4P9Y B 1 118 UNP P02866 CONA_CANEN 164 281 DBREF 4P9Y B 119 237 UNP P02866 CONA_CANEN 30 148 SEQRES 1 A 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 A 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 A 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 A 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 A 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 A 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 A 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 A 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 A 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 A 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 A 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 A 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 A 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 A 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 A 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 A 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 A 237 ASP ALA ASN SEQRES 1 B 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 B 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 B 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 B 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 B 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 B 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 B 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 B 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 B 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 B 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 B 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 B 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 B 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 B 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 B 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 B 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 B 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 B 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 B 237 ASP ALA ASN HET 2KO A 301 62 HET MN A 302 1 HET CA A 303 1 HET 2KO B 301 62 HET MN B 302 1 HET CA B 303 1 HETNAM 2KO 2-{2-[2-(2-{4-[(ALPHA-D-MANNOPYRANOSYLOXY)METHYL]-1H-1, HETNAM 2 2KO 2,3-TRIAZOL-1-YL}ETHOXY)ETHOXY]ETHOXY}ETHYL 2-[3,6- HETNAM 3 2KO BIS(DIETHYLAMINO)-9H-XANTHEN-9-YL]BENZOATE HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION FORMUL 3 2KO 2(C45 H61 N5 O12) FORMUL 4 MN 2(MN 2+) FORMUL 5 CA 2(CA 2+) FORMUL 9 HOH *88(H2 O) HELIX 1 AA1 ASN A 14 GLY A 18 5 5 HELIX 2 AA2 ASP A 80 LEU A 85 1 6 HELIX 3 AA3 THR A 226 LEU A 230 5 5 HELIX 4 AA4 ASN B 14 GLY B 18 5 5 HELIX 5 AA5 ASP B 80 LEU B 85 1 6 HELIX 6 AA6 THR B 226 LEU B 230 5 5 SHEET 1 AA1 7 LYS A 36 LYS A 39 0 SHEET 2 AA1 7 HIS A 24 ILE A 29 -1 N ILE A 25 O ALA A 38 SHEET 3 AA1 7 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 AA1 7 GLY A 209 SER A 215 -1 O PHE A 212 N VAL A 7 SHEET 5 AA1 7 TRP A 88 SER A 96 -1 N SER A 94 O ALA A 211 SHEET 6 AA1 7 VAL A 170 PHE A 175 -1 O ALA A 173 N LEU A 93 SHEET 7 AA1 7 LEU A 140 GLY A 144 -1 N ILE A 141 O LEU A 174 SHEET 1 AA2 6 LYS A 36 LYS A 39 0 SHEET 2 AA2 6 HIS A 24 ILE A 29 -1 N ILE A 25 O ALA A 38 SHEET 3 AA2 6 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 AA2 6 GLY A 209 SER A 215 -1 O PHE A 212 N VAL A 7 SHEET 5 AA2 6 TRP A 88 SER A 96 -1 N SER A 94 O ALA A 211 SHEET 6 AA2 6 VAL A 179 HIS A 180 -1 O VAL A 179 N VAL A 89 SHEET 1 AA312 ALA A 73 ASP A 78 0 SHEET 2 AA312 ARG A 60 SER A 66 -1 N VAL A 65 O ALA A 73 SHEET 3 AA312 VAL A 47 ASN A 55 -1 N ILE A 53 O SER A 62 SHEET 4 AA312 ALA A 186 LEU A 198 -1 O ALA A 193 N ILE A 52 SHEET 5 AA312 THR A 105 SER A 117 -1 N LYS A 116 O VAL A 188 SHEET 6 AA312 THR A 123 PHE A 130 -1 O ASN A 124 N LEU A 115 SHEET 7 AA312 THR B 123 PHE B 130 -1 O HIS B 127 N HIS A 127 SHEET 8 AA312 THR B 105 SER B 117 -1 N LEU B 115 O ASN B 124 SHEET 9 AA312 ALA B 186 LEU B 198 -1 O VAL B 188 N LYS B 116 SHEET 10 AA312 VAL B 47 ASN B 55 -1 N ILE B 52 O ALA B 193 SHEET 11 AA312 ARG B 60 SER B 66 -1 O SER B 66 N THR B 49 SHEET 12 AA312 ALA B 73 ASP B 78 -1 O ALA B 73 N VAL B 65 SHEET 1 AA4 8 THR A 147 THR A 148 0 SHEET 2 AA4 8 LEU A 154 GLU A 155 -1 O GLU A 155 N THR A 147 SHEET 3 AA4 8 THR A 105 SER A 117 -1 N ILE A 106 O LEU A 154 SHEET 4 AA4 8 THR A 123 PHE A 130 -1 O ASN A 124 N LEU A 115 SHEET 5 AA4 8 THR B 123 PHE B 130 -1 O HIS B 127 N HIS A 127 SHEET 6 AA4 8 THR B 105 SER B 117 -1 N LEU B 115 O ASN B 124 SHEET 7 AA4 8 LEU B 154 GLU B 155 -1 O LEU B 154 N ILE B 106 SHEET 8 AA4 8 THR B 147 THR B 148 -1 N THR B 147 O GLU B 155 SHEET 1 AA5 7 LYS B 36 LYS B 39 0 SHEET 2 AA5 7 HIS B 24 ILE B 29 -1 N ILE B 25 O ALA B 38 SHEET 3 AA5 7 ILE B 4 ASP B 10 -1 N ALA B 6 O ASP B 28 SHEET 4 AA5 7 GLY B 209 ASN B 216 -1 O ILE B 210 N LEU B 9 SHEET 5 AA5 7 TRP B 88 SER B 96 -1 N SER B 94 O ALA B 211 SHEET 6 AA5 7 VAL B 170 PHE B 175 -1 O ALA B 173 N LEU B 93 SHEET 7 AA5 7 LEU B 140 GLY B 144 -1 N ILE B 141 O LEU B 174 SHEET 1 AA6 6 LYS B 36 LYS B 39 0 SHEET 2 AA6 6 HIS B 24 ILE B 29 -1 N ILE B 25 O ALA B 38 SHEET 3 AA6 6 ILE B 4 ASP B 10 -1 N ALA B 6 O ASP B 28 SHEET 4 AA6 6 GLY B 209 ASN B 216 -1 O ILE B 210 N LEU B 9 SHEET 5 AA6 6 TRP B 88 SER B 96 -1 N SER B 94 O ALA B 211 SHEET 6 AA6 6 VAL B 179 HIS B 180 -1 O VAL B 179 N VAL B 89 LINK OE2 GLU A 8 MN MN A 302 1555 1555 2.27 LINK OD1 ASP A 10 CA CA A 303 1555 1555 2.42 LINK OD2 ASP A 10 MN MN A 302 1555 1555 2.17 LINK OD2 ASP A 10 CA CA A 303 1555 1555 2.50 LINK O TYR A 12 CA CA A 303 1555 1555 2.39 LINK OD1 ASN A 14 CA CA A 303 1555 1555 2.37 LINK OD1 ASP A 19 MN MN A 302 1555 1555 2.21 LINK OD2 ASP A 19 CA CA A 303 1555 1555 2.34 LINK NE2 HIS A 24 MN MN A 302 1555 1555 2.23 LINK OE2 GLU B 8 MN MN B 302 1555 1555 2.20 LINK OD1 ASP B 10 CA CA B 303 1555 1555 2.51 LINK OD2 ASP B 10 MN MN B 302 1555 1555 2.16 LINK OD2 ASP B 10 CA CA B 303 1555 1555 2.56 LINK O TYR B 12 CA CA B 303 1555 1555 2.35 LINK OD1 ASN B 14 CA CA B 303 1555 1555 2.35 LINK OD1 ASP B 19 MN MN B 302 1555 1555 2.27 LINK OD2 ASP B 19 CA CA B 303 1555 1555 2.43 LINK NE2 HIS B 24 MN MN B 302 1555 1555 2.26 LINK MN MN A 302 O HOH A 423 1555 1555 2.42 LINK MN MN A 302 O HOH A 422 1555 1555 2.15 LINK CA CA A 303 O HOH A 424 1555 1555 2.48 LINK CA CA A 303 O HOH A 425 1555 1555 2.34 LINK MN MN B 302 O HOH B 409 1555 1555 2.24 LINK MN MN B 302 O HOH B 410 1555 1555 2.19 LINK CA CA B 303 O HOH B 412 1555 1555 2.28 LINK CA CA B 303 O HOH B 411 1555 1555 2.46 CISPEP 1 ALA A 207 ASP A 208 0 2.64 CISPEP 2 ALA B 207 ASP B 208 0 4.43 SITE 1 AC1 18 TYR A 12 ASN A 14 ASP A 16 ARG A 90 SITE 2 AC1 18 GLY A 98 LEU A 99 TYR A 100 ALA A 207 SITE 3 AC1 18 ASP A 208 ILE A 217 ASP A 218 GLY A 227 SITE 4 AC1 18 ARG A 228 HOH A 437 HOH A 441 HOH A 443 SITE 5 AC1 18 TYR B 176 2KO B 301 SITE 1 AC2 6 GLU A 8 ASP A 10 ASP A 19 HIS A 24 SITE 2 AC2 6 HOH A 422 HOH A 423 SITE 1 AC3 6 ASP A 10 TYR A 12 ASN A 14 ASP A 19 SITE 2 AC3 6 HOH A 424 HOH A 425 SITE 1 AC4 16 ARG A 90 TYR A 100 ILE A 141 TYR A 176 SITE 2 AC4 16 HIS A 205 2KO A 301 TYR B 12 ASN B 14 SITE 3 AC4 16 GLY B 98 LEU B 99 TYR B 100 TYR B 176 SITE 4 AC4 16 ALA B 207 ASP B 208 GLY B 227 ARG B 228 SITE 1 AC5 6 GLU B 8 ASP B 10 ASP B 19 HIS B 24 SITE 2 AC5 6 HOH B 409 HOH B 410 SITE 1 AC6 6 ASP B 10 TYR B 12 ASN B 14 ASP B 19 SITE 2 AC6 6 HOH B 411 HOH B 412 CRYST1 61.600 116.110 58.690 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016234 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017039 0.00000 MASTER 432 0 6 6 46 0 17 6 0 0 0 38 END