HEADER HYDROLASE 27-MAR-14 4P7R TITLE STRUCTURE OF ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN IN COMPLEX WITH A TITLE 2 POLY-BETA-1,6-N-ACETYL-D-GLUCOSAMINE (PNAG) HEXAMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY-BETA-1,6-N-ACETYL-D-GLUCOSAMINE N-DEACETYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 310-672; COMPND 5 SYNONYM: PGAB, POLY-BETA-1,6-GLCNAC N-DEACETYLASE; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: PGAB, YCDR, B1023, JW5142; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BETA ALPHA BARREL, CARBOHYDRATE BINDING, GLYCOSYL HYDROLASE FOLD, KEYWDS 2 COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.J.LITTLE,G.LI,C.ING,B.DIFRANCESCO,N.C.BAMFORD,H.ROBINSON,M.NITZ, AUTHOR 2 R.POMES,P.L.HOWELL REVDAT 6 29-JUL-20 4P7R 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 08-JAN-20 4P7R 1 REMARK REVDAT 4 22-NOV-17 4P7R 1 COMPND SOURCE JRNL REMARK REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 01-OCT-14 4P7R 1 JRNL REVDAT 2 23-JUL-14 4P7R 1 JRNL REVDAT 1 02-JUL-14 4P7R 0 JRNL AUTH D.J.LITTLE,G.LI,C.ING,B.R.DIFRANCESCO,N.C.BAMFORD, JRNL AUTH 2 H.ROBINSON,M.NITZ,R.POMES,P.L.HOWELL JRNL TITL MODIFICATION AND PERIPLASMIC TRANSLOCATION OF THE BIOFILM JRNL TITL 2 EXOPOLYSACCHARIDE POLY-BETA-1,6-N-ACETYL-D-GLUCOSAMINE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 11013 2014 JRNL REFN ESSN 1091-6490 JRNL PMID 24994902 JRNL DOI 10.1073/PNAS.1406388111 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1615) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 35603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.620 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6465 - 4.3447 1.00 2588 154 0.1560 0.1804 REMARK 3 2 4.3447 - 3.4492 1.00 2466 147 0.1410 0.1726 REMARK 3 3 3.4492 - 3.0134 1.00 2419 144 0.1571 0.1982 REMARK 3 4 3.0134 - 2.7379 1.00 2430 145 0.1660 0.1796 REMARK 3 5 2.7379 - 2.5417 1.00 2394 142 0.1648 0.2205 REMARK 3 6 2.5417 - 2.3919 1.00 2400 143 0.1624 0.1982 REMARK 3 7 2.3919 - 2.2721 1.00 2402 142 0.1579 0.1854 REMARK 3 8 2.2721 - 2.1732 1.00 2385 143 0.1574 0.1797 REMARK 3 9 2.1732 - 2.0896 1.00 2358 140 0.1632 0.2196 REMARK 3 10 2.0896 - 2.0175 1.00 2368 141 0.1575 0.1909 REMARK 3 11 2.0175 - 1.9544 1.00 2382 142 0.1610 0.2063 REMARK 3 12 1.9544 - 1.8985 1.00 2363 141 0.1716 0.2282 REMARK 3 13 1.8985 - 1.8485 1.00 2361 140 0.1806 0.2453 REMARK 3 14 1.8485 - 1.8034 0.96 2287 136 0.1925 0.2389 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3062 REMARK 3 ANGLE : 1.146 4167 REMARK 3 CHIRALITY : 0.055 451 REMARK 3 PLANARITY : 0.005 538 REMARK 3 DIHEDRAL : 18.241 1130 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 346 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6184 63.5260 117.4762 REMARK 3 T TENSOR REMARK 3 T11: 0.2000 T22: 0.1739 REMARK 3 T33: 0.2142 T12: 0.0025 REMARK 3 T13: -0.0085 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.3844 L22: 2.8704 REMARK 3 L33: 2.9507 L12: -1.4085 REMARK 3 L13: -0.6297 L23: 1.7565 REMARK 3 S TENSOR REMARK 3 S11: 0.1483 S12: 0.1620 S13: 0.0172 REMARK 3 S21: -0.1531 S22: -0.1046 S23: -0.1448 REMARK 3 S31: -0.0054 S32: -0.0630 S33: -0.0373 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 347 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9632 71.5036 113.5722 REMARK 3 T TENSOR REMARK 3 T11: 0.1708 T22: 0.1891 REMARK 3 T33: 0.1649 T12: 0.0206 REMARK 3 T13: 0.0144 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.0437 L22: 5.1570 REMARK 3 L33: 3.0805 L12: -1.1957 REMARK 3 L13: 0.7383 L23: -1.7621 REMARK 3 S TENSOR REMARK 3 S11: 0.1343 S12: 0.1902 S13: -0.0808 REMARK 3 S21: -0.3786 S22: -0.1157 S23: -0.0373 REMARK 3 S31: 0.1086 S32: -0.0252 S33: -0.0194 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 392 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3648 86.0129 119.1252 REMARK 3 T TENSOR REMARK 3 T11: 0.1378 T22: 0.1831 REMARK 3 T33: 0.1396 T12: -0.0047 REMARK 3 T13: 0.0058 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.2889 L22: 3.6195 REMARK 3 L33: 1.4363 L12: -0.6316 REMARK 3 L13: -0.0167 L23: -0.4983 REMARK 3 S TENSOR REMARK 3 S11: 0.0902 S12: 0.0546 S13: 0.0395 REMARK 3 S21: -0.1212 S22: -0.1353 S23: -0.0599 REMARK 3 S31: -0.0780 S32: 0.0008 S33: 0.0403 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 478 THROUGH 502 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1254 103.1376 130.7081 REMARK 3 T TENSOR REMARK 3 T11: 0.2737 T22: 0.2326 REMARK 3 T33: 0.2221 T12: 0.0213 REMARK 3 T13: 0.0038 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 2.6319 L22: 3.6192 REMARK 3 L33: 8.1585 L12: 0.0431 REMARK 3 L13: 1.1344 L23: 1.3963 REMARK 3 S TENSOR REMARK 3 S11: -0.0921 S12: -0.1629 S13: 0.4364 REMARK 3 S21: 0.1751 S22: -0.0329 S23: 0.1203 REMARK 3 S31: -0.8509 S32: -0.1278 S33: 0.1421 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 503 THROUGH 529 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6371 85.2597 127.1296 REMARK 3 T TENSOR REMARK 3 T11: 0.2193 T22: 0.2444 REMARK 3 T33: 0.2584 T12: -0.0093 REMARK 3 T13: -0.0018 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 1.3338 L22: 4.5475 REMARK 3 L33: 6.2416 L12: 2.1852 REMARK 3 L13: 2.4573 L23: 6.6904 REMARK 3 S TENSOR REMARK 3 S11: 0.0680 S12: -0.0802 S13: -0.0619 REMARK 3 S21: 0.1390 S22: -0.4091 S23: 0.4633 REMARK 3 S31: 0.1104 S32: -0.4042 S33: 0.4273 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 530 THROUGH 595 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0857 79.6193 136.7340 REMARK 3 T TENSOR REMARK 3 T11: 0.2071 T22: 0.1716 REMARK 3 T33: 0.1400 T12: -0.0184 REMARK 3 T13: 0.0135 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 3.0151 L22: 2.5546 REMARK 3 L33: 1.6693 L12: -1.3350 REMARK 3 L13: 0.6170 L23: -0.5292 REMARK 3 S TENSOR REMARK 3 S11: -0.1328 S12: -0.2453 S13: 0.0883 REMARK 3 S21: 0.3925 S22: 0.0733 S23: -0.0438 REMARK 3 S31: -0.0478 S32: -0.0730 S33: 0.0671 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 596 THROUGH 668 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5225 68.5498 132.8873 REMARK 3 T TENSOR REMARK 3 T11: 0.1703 T22: 0.1236 REMARK 3 T33: 0.1428 T12: -0.0113 REMARK 3 T13: -0.0156 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 4.4684 L22: 2.8472 REMARK 3 L33: 3.9598 L12: -0.8074 REMARK 3 L13: -0.1001 L23: 0.7761 REMARK 3 S TENSOR REMARK 3 S11: 0.0508 S12: -0.0077 S13: -0.0323 REMARK 3 S21: 0.0317 S22: -0.0064 S23: -0.0955 REMARK 3 S31: 0.0884 S32: 0.1714 S33: -0.0175 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P7R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000200874. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35680 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 48.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 0.55700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4P7L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 0.1 M BIS-TRIS, 25 MM REMARK 280 PNAG HEXAMER, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.11600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.42200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.89300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.42200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.11600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.89300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 306 REMARK 465 SER A 307 REMARK 465 HIS A 308 REMARK 465 MET A 309 REMARK 465 PRO A 669 REMARK 465 LYS A 670 REMARK 465 ASN A 671 REMARK 465 ASP A 672 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 LYS A 423 CG CD CE NZ REMARK 470 LYS A 615 CG CD CE NZ REMARK 470 LYS A 640 CG CD CE NZ REMARK 470 TYR A 668 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 841 O HOH A 869 4477 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 348 -167.42 -124.00 REMARK 500 ASP A 409 128.23 -32.23 REMARK 500 ASN A 616 -71.77 -61.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P7L RELATED DB: PDB REMARK 900 ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN APO FORM REMARK 900 RELATED ID: 4P7N RELATED DB: PDB REMARK 900 ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN IN COMPLEX WITH GLUCOSAMINE REMARK 900 RELATED ID: 4P7O RELATED DB: PDB REMARK 900 ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN APO FORM, P1 CRYSTAL FORM REMARK 900 RELATED ID: 4P7Q RELATED DB: PDB REMARK 900 ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN IN COMPLEX WITH N- REMARK 900 ACETYLGLUCOSAMINE DBREF 4P7R A 310 672 UNP P75906 PGAB_ECOLI 310 672 SEQADV 4P7R GLY A 306 UNP P75906 EXPRESSION TAG SEQADV 4P7R SER A 307 UNP P75906 EXPRESSION TAG SEQADV 4P7R HIS A 308 UNP P75906 EXPRESSION TAG SEQADV 4P7R MET A 309 UNP P75906 EXPRESSION TAG SEQRES 1 A 367 GLY SER HIS MET GLU LYS SER PRO GLN ARG ILE MET HIS SEQRES 2 A 367 ILE ASP LEU ASP TYR VAL TYR ASP GLU ASN LEU GLN GLN SEQRES 3 A 367 MET ASP ARG ASN ILE ASP VAL LEU ILE GLN ARG VAL LYS SEQRES 4 A 367 ASP MET GLN ILE SER THR VAL TYR LEU GLN ALA PHE ALA SEQRES 5 A 367 ASP PRO ASP GLY ASP GLY LEU VAL LYS GLU VAL TRP PHE SEQRES 6 A 367 PRO ASN ARG LEU LEU PRO MET LYS ALA ASP ILE PHE SER SEQRES 7 A 367 ARG VAL ALA TRP GLN LEU ARG THR ARG SER GLY VAL ASN SEQRES 8 A 367 ILE TYR ALA TRP MET PRO VAL LEU SER TRP ASP LEU ASP SEQRES 9 A 367 PRO THR LEU THR ARG VAL LYS TYR LEU PRO THR GLY GLU SEQRES 10 A 367 LYS LYS ALA GLN ILE HIS PRO GLU GLN TYR HIS ARG LEU SEQRES 11 A 367 SER PRO PHE ASP ASP ARG VAL ARG ALA GLN VAL GLY MET SEQRES 12 A 367 LEU TYR GLU ASP LEU ALA GLY HIS ALA ALA PHE ASP GLY SEQRES 13 A 367 ILE LEU PHE HIS ASP ASP ALA LEU LEU SER ASP TYR GLU SEQRES 14 A 367 ASP ALA SER ALA PRO ALA ILE THR ALA TYR GLN GLN ALA SEQRES 15 A 367 GLY PHE SER GLY SER LEU SER GLU ILE ARG GLN ASN PRO SEQRES 16 A 367 GLU GLN PHE LYS GLN TRP ALA ARG PHE LYS SER ARG ALA SEQRES 17 A 367 LEU THR ASP PHE THR LEU GLU LEU SER ALA ARG VAL LYS SEQRES 18 A 367 ALA ILE ARG GLY PRO HIS ILE LYS THR ALA ARG ASN ILE SEQRES 19 A 367 PHE ALA LEU PRO VAL ILE GLN PRO GLU SER GLU ALA TRP SEQRES 20 A 367 PHE ALA GLN ASN TYR ALA ASP PHE LEU LYS SER TYR ASP SEQRES 21 A 367 TRP THR ALA ILE MET ALA MET PRO TYR LEU GLU GLY VAL SEQRES 22 A 367 ALA GLU LYS SER ALA ASP GLN TRP LEU ILE GLN LEU THR SEQRES 23 A 367 ASN GLN ILE LYS ASN ILE PRO GLN ALA LYS ASP LYS SER SEQRES 24 A 367 ILE LEU GLU LEU GLN ALA GLN ASN TRP GLN LYS ASN GLY SEQRES 25 A 367 GLN HIS GLN ALA ILE SER SER GLN GLN LEU ALA HIS TRP SEQRES 26 A 367 MET SER LEU LEU GLN LEU ASN GLY VAL LYS ASN TYR GLY SEQRES 27 A 367 TYR TYR PRO ASP ASN PHE LEU HIS ASN GLN PRO GLU ILE SEQRES 28 A 367 ASP LEU ILE ARG PRO GLU PHE SER THR ALA TRP TYR PRO SEQRES 29 A 367 LYS ASN ASP HET NAG B 1 15 HET NAG B 2 14 HET NAG B 3 14 HET NAG B 4 14 HET EDO A 701 4 HET EDO A 702 4 HET EDO A 703 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 HOH *221(H2 O) HELIX 1 AA1 ASN A 328 GLN A 347 1 20 HELIX 2 AA2 ILE A 381 ARG A 392 1 12 HELIX 3 AA3 ASP A 439 ALA A 457 1 19 HELIX 4 AA4 SER A 477 ALA A 487 1 11 HELIX 5 AA5 SER A 492 GLN A 498 1 7 HELIX 6 AA6 GLN A 502 GLY A 530 1 29 HELIX 7 AA7 PHE A 540 GLN A 546 1 7 HELIX 8 AA8 SER A 549 ALA A 554 1 6 HELIX 9 AA9 ASN A 556 TYR A 564 1 9 HELIX 10 AB1 ALA A 579 LYS A 581 5 3 HELIX 11 AB2 SER A 582 ASN A 596 1 15 HELIX 12 AB3 GLN A 599 ASP A 602 5 4 HELIX 13 AB4 SER A 623 ASN A 637 1 15 HELIX 14 AB5 GLU A 655 SER A 664 1 10 SHEET 1 AA1 9 ARG A 315 ILE A 319 0 SHEET 2 AA1 9 THR A 350 GLN A 354 1 O TYR A 352 N ILE A 319 SHEET 3 AA1 9 ASN A 396 MET A 401 1 O TYR A 398 N LEU A 353 SHEET 4 AA1 9 GLY A 461 PHE A 464 1 O GLY A 461 N ALA A 399 SHEET 5 AA1 9 LYS A 534 ILE A 539 1 O ALA A 536 N PHE A 464 SHEET 6 AA1 9 TRP A 566 MET A 570 1 O MET A 570 N ILE A 539 SHEET 7 AA1 9 SER A 604 GLN A 609 1 O GLU A 607 N ILE A 569 SHEET 8 AA1 9 TYR A 642 TYR A 645 1 O GLY A 643 N LEU A 608 SHEET 9 AA1 9 ARG A 315 ILE A 319 1 N HIS A 318 O TYR A 644 SHEET 1 AA2 2 GLN A 611 ASN A 612 0 SHEET 2 AA2 2 GLN A 620 ALA A 621 -1 O GLN A 620 N ASN A 612 LINK O6 NAG B 1 C1 NAG B 2 1555 1555 1.41 LINK O6 NAG B 2 C1 NAG B 3 1555 1555 1.41 LINK O6 NAG B 3 C1 NAG B 4 1555 1555 1.43 CISPEP 1 SER A 312 PRO A 313 0 -4.04 CISPEP 2 GLU A 474 ASP A 475 0 -12.98 CISPEP 3 TYR A 645 PRO A 646 0 -5.83 CISPEP 4 GLN A 653 PRO A 654 0 1.17 CRYST1 42.232 77.786 114.844 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023679 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012856 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008707 0.00000 MASTER 388 0 7 14 11 0 0 6 0 0 0 29 END