HEADER DNA BINDING PROTEIN 26-MAR-14 4P7A TITLE CRYSTAL STRUCTURE OF HUMAN MLH1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA MISMATCH REPAIR PROTEIN MLH1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MUTL PROTEIN HOMOLOG 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MLH1, COCA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS STRUCTURAL GENOMICS CONSORTIUM, DNA MISMATCH REPAIR, DNA DAMAGE, SGC, KEYWDS 2 DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.TEMPEL,R.LAM,H.ZENG,J.R.WALKER,P.LOPPNAU,C.BOUNTRA,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,J.MIN,H.WU,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 17-JUL-19 4P7A 1 HEADER REMARK ATOM REVDAT 3 16-DEC-15 4P7A 1 JRNL REVDAT 2 12-NOV-14 4P7A 1 SPRSDE REVDAT 1 09-APR-14 4P7A 0 SPRSDE 12-NOV-14 4P7A 3NA3 JRNL AUTH H.WU,H.ZENG,R.LAM,W.TEMPEL,I.D.KERR,J.MIN JRNL TITL STRUCTURE OF THE HUMAN MLH1 N-TERMINUS: IMPLICATIONS FOR JRNL TITL 2 PREDISPOSITION TO LYNCH SYNDROME. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 71 981 2015 JRNL REFN ESSN 2053-230X JRNL PMID 26249686 JRNL DOI 10.1107/S2053230X15010183 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 981 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1367 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2195 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 35 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : -2.40000 REMARK 3 B12 (A**2) : 0.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.236 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.410 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2284 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2127 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3114 ; 1.414 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4852 ; 0.800 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 6.534 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;36.591 ;23.810 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 348 ;13.307 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;24.898 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 377 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2621 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 500 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1223 ; 2.991 ; 3.602 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1222 ; 2.983 ; 3.600 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1527 ; 4.141 ; 5.384 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 11 REMARK 3 ORIGIN FOR THE GROUP (A): 35.1370 -56.6788 18.5016 REMARK 3 T TENSOR REMARK 3 T11: 0.1838 T22: 0.1722 REMARK 3 T33: 0.1994 T12: -0.0310 REMARK 3 T13: -0.0393 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 2.0232 L22: 6.3497 REMARK 3 L33: 1.0213 L12: -0.3370 REMARK 3 L13: 1.2098 L23: -1.5515 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: -0.0804 S13: -0.0357 REMARK 3 S21: -0.1388 S22: -0.0573 S23: -0.3475 REMARK 3 S31: 0.0244 S32: -0.0034 S33: 0.0353 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 209 REMARK 3 ORIGIN FOR THE GROUP (A): 26.7544 -20.4770 8.9830 REMARK 3 T TENSOR REMARK 3 T11: 0.0519 T22: 0.0262 REMARK 3 T33: 0.1298 T12: -0.0003 REMARK 3 T13: 0.0213 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 3.9262 L22: 4.3785 REMARK 3 L33: 3.2874 L12: -0.0340 REMARK 3 L13: 0.3404 L23: -1.1865 REMARK 3 S TENSOR REMARK 3 S11: 0.1170 S12: 0.0189 S13: -0.1967 REMARK 3 S21: 0.0611 S22: -0.2644 S23: -0.2492 REMARK 3 S31: 0.0996 S32: 0.2347 S33: 0.1474 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 210 A 336 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8412 -22.4485 -17.1678 REMARK 3 T TENSOR REMARK 3 T11: 0.3324 T22: 0.4644 REMARK 3 T33: 0.3947 T12: -0.0211 REMARK 3 T13: -0.1369 T23: -0.0924 REMARK 3 L TENSOR REMARK 3 L11: 3.3020 L22: 5.7493 REMARK 3 L33: 6.9218 L12: 0.2110 REMARK 3 L13: 0.8613 L23: 1.7503 REMARK 3 S TENSOR REMARK 3 S11: -0.1583 S12: 0.6624 S13: -0.4640 REMARK 3 S21: -0.2720 S22: 0.0946 S23: 0.0154 REMARK 3 S31: 0.7350 S32: -0.1302 S33: 0.0637 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THIS ENTRY IS A RE-INTERPRETATION OF REMARK 3 THE DATA UNDERLYING ENTRY 3NA3. AUTOBUSTER WAS USED DURING REMARK 3 INTERMEDIATE REFINEMENT STEPS. COOT WAS USED FOR INTERACTIVE REMARK 3 MODEL BUILDING. MODEL GEOMETRY WAS EVALUATED WITH MOLPROBITY. REMARK 4 REMARK 4 4P7A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19468 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 1.11300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000, 10% ISOPROPANOL, 0.1 M REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.60833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.21667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.60833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.21667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HAS NOT BEEN DETERMINED AS PART OF THIS STUDY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 47.28400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -81.89829 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 86 REMARK 465 SER A 87 REMARK 465 PHE A 88 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 LEU A 91 REMARK 465 ALA A 92 REMARK 465 SER A 93 REMARK 465 ILE A 94 REMARK 465 SER A 95 REMARK 465 THR A 96 REMARK 465 TYR A 97 REMARK 465 GLN A 301 REMARK 465 ASN A 302 REMARK 465 VAL A 303 REMARK 465 ASP A 304 REMARK 465 VAL A 305 REMARK 465 ASN A 306 REMARK 465 VAL A 307 REMARK 465 HIS A 308 REMARK 465 PRO A 309 REMARK 465 THR A 310 REMARK 465 LYS A 311 REMARK 465 HIS A 312 REMARK 465 GLU A 313 REMARK 465 VAL A 314 REMARK 465 HIS A 315 REMARK 465 PHE A 316 REMARK 465 LEU A 317 REMARK 465 HIS A 318 REMARK 465 GLU A 319 REMARK 465 SER A 337 REMARK 465 ASN A 338 REMARK 465 SER A 339 REMARK 465 SER A 340 REMARK 465 ARG A 341 REMARK 465 MET A 342 REMARK 465 TYR A 343 REMARK 465 PHE A 344 REMARK 465 THR A 345 REMARK 465 GLN A 346 REMARK 465 THR A 347 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 3 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 26 CG CD OE1 NE2 REMARK 470 LYS A 43 CE NZ REMARK 470 LYS A 52 CE NZ REMARK 470 ASP A 121 CG OD1 OD2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS A 140 CE NZ REMARK 470 ARG A 163 NE CZ NH1 NH2 REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 LYS A 167 CD CE NZ REMARK 470 LYS A 175 CD CE NZ REMARK 470 LYS A 195 NZ REMARK 470 ASN A 209 CG OD1 ND2 REMARK 470 ARG A 217 NE CZ NH1 NH2 REMARK 470 ARG A 226 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 234 CG CD OE1 OE2 REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 THR A 237 OG1 CG2 REMARK 470 LEU A 238 CG CD1 CD2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 ASN A 250 OD1 ND2 REMARK 470 TYR A 251 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 252 OG REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 THR A 270 OG1 CG2 REMARK 470 LEU A 272 CG CD1 CD2 REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 GLU A 277 CG CD OE1 OE2 REMARK 470 LEU A 284 CG CD1 CD2 REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 ASN A 287 CG OD1 ND2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 SER A 299 OG REMARK 470 GLU A 320 CG CD OE1 OE2 REMARK 470 SER A 321 OG REMARK 470 ILE A 322 CG1 CG2 CD1 REMARK 470 LEU A 323 CG CD1 CD2 REMARK 470 GLU A 324 CG CD OE1 OE2 REMARK 470 ARG A 325 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 326 CG1 CG2 REMARK 470 GLN A 327 CG CD OE1 NE2 REMARK 470 GLN A 328 CG CD OE1 NE2 REMARK 470 LYS A 333 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 26 -46.53 77.09 REMARK 500 ASN A 209 52.27 -113.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 38 OD1 REMARK 620 2 ADP A 402 O1B 93.9 REMARK 620 3 ADP A 402 O1A 97.5 83.2 REMARK 620 4 HOH A 512 O 173.1 88.6 89.2 REMARK 620 5 HOH A 510 O 87.8 177.3 98.5 89.4 REMARK 620 6 HOH A 511 O 86.2 87.5 170.2 87.5 90.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NA3 RELATED DB: PDB REMARK 900 THIS ENTRY IS A RE-INTERPRETATION OF THE DATA UNDERLYING ENTRY 3NA3. DBREF 4P7A A 1 347 UNP P40692 MLH1_HUMAN 1 347 SEQADV 4P7A GLY A 0 UNP P40692 EXPRESSION TAG SEQRES 1 A 348 GLY MET SER PHE VAL ALA GLY VAL ILE ARG ARG LEU ASP SEQRES 2 A 348 GLU THR VAL VAL ASN ARG ILE ALA ALA GLY GLU VAL ILE SEQRES 3 A 348 GLN ARG PRO ALA ASN ALA ILE LYS GLU MET ILE GLU ASN SEQRES 4 A 348 CYS LEU ASP ALA LYS SER THR SER ILE GLN VAL ILE VAL SEQRES 5 A 348 LYS GLU GLY GLY LEU LYS LEU ILE GLN ILE GLN ASP ASN SEQRES 6 A 348 GLY THR GLY ILE ARG LYS GLU ASP LEU ASP ILE VAL CYS SEQRES 7 A 348 GLU ARG PHE THR THR SER LYS LEU GLN SER PHE GLU ASP SEQRES 8 A 348 LEU ALA SER ILE SER THR TYR GLY PHE ARG GLY GLU ALA SEQRES 9 A 348 LEU ALA SER ILE SER HIS VAL ALA HIS VAL THR ILE THR SEQRES 10 A 348 THR LYS THR ALA ASP GLY LYS CYS ALA TYR ARG ALA SER SEQRES 11 A 348 TYR SER ASP GLY LYS LEU LYS ALA PRO PRO LYS PRO CYS SEQRES 12 A 348 ALA GLY ASN GLN GLY THR GLN ILE THR VAL GLU ASP LEU SEQRES 13 A 348 PHE TYR ASN ILE ALA THR ARG ARG LYS ALA LEU LYS ASN SEQRES 14 A 348 PRO SER GLU GLU TYR GLY LYS ILE LEU GLU VAL VAL GLY SEQRES 15 A 348 ARG TYR SER VAL HIS ASN ALA GLY ILE SER PHE SER VAL SEQRES 16 A 348 LYS LYS GLN GLY GLU THR VAL ALA ASP VAL ARG THR LEU SEQRES 17 A 348 PRO ASN ALA SER THR VAL ASP ASN ILE ARG SER ILE PHE SEQRES 18 A 348 GLY ASN ALA VAL SER ARG GLU LEU ILE GLU ILE GLY CYS SEQRES 19 A 348 GLU ASP LYS THR LEU ALA PHE LYS MET ASN GLY TYR ILE SEQRES 20 A 348 SER ASN ALA ASN TYR SER VAL LYS LYS CYS ILE PHE LEU SEQRES 21 A 348 LEU PHE ILE ASN HIS ARG LEU VAL GLU SER THR SER LEU SEQRES 22 A 348 ARG LYS ALA ILE GLU THR VAL TYR ALA ALA TYR LEU PRO SEQRES 23 A 348 LYS ASN THR HIS PRO PHE LEU TYR LEU SER LEU GLU ILE SEQRES 24 A 348 SER PRO GLN ASN VAL ASP VAL ASN VAL HIS PRO THR LYS SEQRES 25 A 348 HIS GLU VAL HIS PHE LEU HIS GLU GLU SER ILE LEU GLU SEQRES 26 A 348 ARG VAL GLN GLN HIS ILE GLU SER LYS LEU LEU GLY SER SEQRES 27 A 348 ASN SER SER ARG MET TYR PHE THR GLN THR HET MG A 401 1 HET ADP A 402 27 HET UNX A 403 1 HET UNX A 404 1 HET UNX A 405 1 HET UNX A 406 1 HET UNX A 407 1 HET UNX A 408 1 HET UNX A 409 1 HET UNX A 410 1 HET UNX A 411 1 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 UNX 9(X) FORMUL 13 HOH *35(H2 O) HELIX 1 AA1 ASP A 12 GLN A 26 1 15 HELIX 2 AA2 ARG A 27 ALA A 42 1 16 HELIX 3 AA3 ARG A 69 LEU A 73 5 5 HELIX 4 AA4 GLU A 102 VAL A 110 1 9 HELIX 5 AA5 ILE A 159 LEU A 166 1 8 HELIX 6 AA6 ASN A 168 ASN A 187 1 20 HELIX 7 AA7 SER A 211 GLY A 221 1 11 HELIX 8 AA8 GLY A 221 ARG A 226 1 6 HELIX 9 AA9 SER A 269 ALA A 282 1 14 HELIX 10 AB1 SER A 321 GLY A 336 1 16 SHEET 1 AA1 3 LYS A 134 LEU A 135 0 SHEET 2 AA1 3 ALA A 125 SER A 131 -1 N SER A 131 O LYS A 134 SHEET 3 AA1 3 LYS A 140 CYS A 142 -1 O LYS A 140 N ARG A 127 SHEET 1 AA2 8 LYS A 134 LEU A 135 0 SHEET 2 AA2 8 ALA A 125 SER A 131 -1 N SER A 131 O LYS A 134 SHEET 3 AA2 8 HIS A 112 LYS A 118 -1 N ILE A 115 O ALA A 128 SHEET 4 AA2 8 GLY A 147 GLU A 153 -1 O GLN A 149 N THR A 116 SHEET 5 AA2 8 LEU A 58 ASP A 63 -1 N ILE A 59 O VAL A 152 SHEET 6 AA2 8 SER A 46 LYS A 52 -1 N GLN A 48 O GLN A 62 SHEET 7 AA2 8 SER A 191 LYS A 196 1 O SER A 191 N ILE A 47 SHEET 8 AA2 8 VAL A 204 ARG A 205 -1 O VAL A 204 N VAL A 194 SHEET 1 AA3 5 LEU A 228 ASP A 235 0 SHEET 2 AA3 5 PHE A 240 SER A 247 -1 O ILE A 246 N ILE A 229 SHEET 3 AA3 5 PHE A 291 ILE A 298 -1 O SER A 295 N ASN A 243 SHEET 4 AA3 5 ILE A 257 ILE A 262 1 N PHE A 261 O LEU A 296 SHEET 5 AA3 5 ARG A 265 LEU A 266 -1 O ARG A 265 N ILE A 262 LINK OD1 ASN A 38 MG MG A 401 1555 1555 2.10 LINK MG MG A 401 O1B ADP A 402 1555 1555 2.12 LINK MG MG A 401 O1A ADP A 402 1555 1555 1.98 LINK MG MG A 401 O HOH A 512 1555 1555 2.02 LINK MG MG A 401 O HOH A 510 1555 1555 2.05 LINK MG MG A 401 O HOH A 511 1555 1555 1.91 SITE 1 AC1 5 ASN A 38 ADP A 402 HOH A 510 HOH A 511 SITE 2 AC1 5 HOH A 512 SITE 1 AC2 23 ASN A 38 ALA A 42 ASP A 63 GLY A 67 SITE 2 AC2 23 ILE A 68 VAL A 76 THR A 81 THR A 82 SITE 3 AC2 23 SER A 83 LYS A 84 ARG A 100 GLY A 101 SITE 4 AC2 23 ALA A 103 LEU A 104 THR A 148 MG A 401 SITE 5 AC2 23 HOH A 503 HOH A 510 HOH A 511 HOH A 512 SITE 6 AC2 23 HOH A 513 HOH A 517 HOH A 520 CRYST1 94.568 94.568 85.825 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010574 0.006105 0.000000 0.00000 SCALE2 0.000000 0.012210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011652 0.00000 MASTER 457 0 11 10 16 0 8 6 0 0 0 27 END