HEADER VIRAL PROTEIN/INHIBITOR 11-FEB-14 4OYD TITLE CRYSTAL STRUCTURE OF A COMPUTATIONALLY DESIGNED INHIBITOR OF AN TITLE 2 EPSTEIN-BARR VIRAL BCL-2 PROTEIN CAVEAT 4OYD RESIDUE B LYS 22 AND RESIDUE B GLN 23 ARE CONNECTED BY C-N CAVEAT 2 4OYD BOND OF 1.61 ANGSTROMS THAT IS LONGER THAN NORMAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOPTOSIS REGULATOR BHRF1; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: EARLY ANTIGEN PROTEIN R,EA-R,NUCLEAR ANTIGEN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: COMPUTATIONALLY DESIGNED INHIBITOR; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EPSTEIN-BARR VIRUS; SOURCE 3 ORGANISM_COMMON: HHV-4; SOURCE 4 ORGANISM_TAXID: 82830; SOURCE 5 STRAIN: AG876; SOURCE 6 GENE: BHRF1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS INHIBITOR, COMPLEX, APOPTOSIS, VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.SHEN,E.PROCKO,D.BAKER,B.STODDARD REVDAT 3 01-NOV-17 4OYD 1 SOURCE REMARK REVDAT 2 14-JAN-15 4OYD 1 CAVEAT DBREF REVDAT 1 09-JUL-14 4OYD 0 JRNL AUTH E.PROCKO,G.Y.BERGUIG,B.W.SHEN,Y.SONG,S.FRAYO,A.J.CONVERTINE, JRNL AUTH 2 D.MARGINEANTU,G.BOOTH,B.E.CORREIA,Y.CHENG,W.R.SCHIEF, JRNL AUTH 3 D.M.HOCKENBERY,O.W.PRESS,B.L.STODDARD,P.S.STAYTON,D.BAKER JRNL TITL A COMPUTATIONALLY DESIGNED INHIBITOR OF AN EPSTEIN-BARR JRNL TITL 2 VIRAL BCL-2 PROTEIN INDUCES APOPTOSIS IN INFECTED CELLS. JRNL REF CELL V. 157 1644 2014 JRNL REFN ISSN 1097-4172 JRNL PMID 24949974 JRNL DOI 10.1016/J.CELL.2014.04.034 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 82.5 REMARK 3 NUMBER OF REFLECTIONS : 46840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2487 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 876 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 20.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4473 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.77000 REMARK 3 B22 (A**2) : 8.02000 REMARK 3 B33 (A**2) : 0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.76000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.025 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.321 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4815 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4670 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6518 ; 1.857 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10752 ; 1.340 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 599 ; 5.426 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 248 ;33.264 ;23.548 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 931 ;16.924 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;17.335 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 710 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5508 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1128 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2318 ; 1.636 ; 1.578 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2317 ; 1.635 ; 1.578 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2928 ; 2.502 ; 2.345 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2929 ; 2.502 ; 2.346 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2497 ; 2.441 ; 1.963 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2497 ; 2.438 ; 1.963 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3586 ; 3.913 ; 2.817 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5753 ; 5.604 ;12.963 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5754 ; 5.604 ;12.964 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 156 C 1 156 8276 0.16 0.05 REMARK 3 2 B 1 117 D 1 117 7354 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3283 23.7130 -35.5962 REMARK 3 T TENSOR REMARK 3 T11: 0.0090 T22: 0.0621 REMARK 3 T33: 0.0148 T12: 0.0046 REMARK 3 T13: 0.0041 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 2.3642 L22: 1.3162 REMARK 3 L33: 1.9850 L12: -0.0065 REMARK 3 L13: -0.1916 L23: 0.0751 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: -0.0440 S13: -0.1114 REMARK 3 S21: -0.0255 S22: 0.0118 S23: -0.1009 REMARK 3 S31: 0.1253 S32: 0.1363 S33: 0.0098 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 117 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1705 37.6208 -28.5331 REMARK 3 T TENSOR REMARK 3 T11: 0.0676 T22: 0.0897 REMARK 3 T33: 0.0669 T12: 0.0225 REMARK 3 T13: 0.0231 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 2.8787 L22: 3.0109 REMARK 3 L33: 1.8481 L12: 1.2396 REMARK 3 L13: 0.2098 L23: 0.2957 REMARK 3 S TENSOR REMARK 3 S11: 0.0496 S12: -0.0722 S13: 0.3852 REMARK 3 S21: 0.1084 S22: -0.0245 S23: 0.0730 REMARK 3 S31: -0.2790 S32: 0.0799 S33: -0.0250 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 158 REMARK 3 ORIGIN FOR THE GROUP (A): -23.0508 28.8432 -7.7564 REMARK 3 T TENSOR REMARK 3 T11: 0.0066 T22: 0.0289 REMARK 3 T33: 0.0097 T12: 0.0088 REMARK 3 T13: -0.0050 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 2.5088 L22: 1.6504 REMARK 3 L33: 1.7705 L12: 0.1246 REMARK 3 L13: -0.0182 L23: -0.0158 REMARK 3 S TENSOR REMARK 3 S11: -0.0334 S12: -0.0004 S13: 0.0616 REMARK 3 S21: -0.0635 S22: 0.0203 S23: 0.1151 REMARK 3 S31: -0.0692 S32: -0.1299 S33: 0.0131 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 117 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7138 15.2771 -0.5725 REMARK 3 T TENSOR REMARK 3 T11: 0.0283 T22: 0.0399 REMARK 3 T33: 0.0102 T12: 0.0250 REMARK 3 T13: -0.0060 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 2.4136 L22: 3.4200 REMARK 3 L33: 0.9425 L12: 2.1685 REMARK 3 L13: -0.7040 L23: -0.6975 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: -0.0192 S13: -0.1172 REMARK 3 S21: 0.1028 S22: -0.0199 S23: -0.0786 REMARK 3 S31: 0.0912 S32: 0.0539 S33: -0.0112 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 236 REMARK 3 RESIDUE RANGE : B 201 B 223 REMARK 3 RESIDUE RANGE : C 201 C 250 REMARK 3 RESIDUE RANGE : D 301 D 344 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1454 23.7188 -13.6685 REMARK 3 T TENSOR REMARK 3 T11: 0.0841 T22: 0.1171 REMARK 3 T33: 0.0991 T12: -0.0012 REMARK 3 T13: 0.0083 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.1566 L22: 0.0587 REMARK 3 L33: 0.3740 L12: 0.0096 REMARK 3 L13: -0.1493 L23: -0.0461 REMARK 3 S TENSOR REMARK 3 S11: 0.0198 S12: -0.0187 S13: -0.0136 REMARK 3 S21: 0.0033 S22: -0.0078 S23: 0.0153 REMARK 3 S31: 0.0041 S32: -0.0097 S33: -0.0119 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 201 D 201 REMARK 3 ORIGIN FOR THE GROUP (A): -31.3864 -5.8970 8.4614 REMARK 3 T TENSOR REMARK 3 T11: 0.0421 T22: 0.0870 REMARK 3 T33: 0.0775 T12: -0.0020 REMARK 3 T13: -0.0310 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 12.6096 L22: 120.5920 REMARK 3 L33: 42.2039 L12: 23.6357 REMARK 3 L13: -3.3933 L23: -62.4854 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: -0.1344 S13: -0.0137 REMARK 3 S21: 0.9805 S22: -0.6132 S23: -0.8066 REMARK 3 S31: -0.6865 S32: 0.3023 S33: 0.5803 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000200246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46840 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 39.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.24900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PHYSICALLY TWINNED. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, MAGNESIUM CHLORIDE, TRISHCL, REMARK 280 PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.93450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: GELFILTRATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 157 REMARK 465 ILE A 158 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 60 O HOH A 221 1.90 REMARK 500 OE1 GLU A 67 O HOH A 226 1.91 REMARK 500 OD1 ASN C 157 NH2 ARG D 65 2.17 REMARK 500 O GLY A 23 O HOH A 201 2.19 REMARK 500 OE1 GLU A 43 O HOH A 202 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA B 14 C GLU B 15 N 0.141 REMARK 500 LYS B 22 C GLN B 23 N 0.273 REMARK 500 LYS B 22 C GLN B 23 N 0.273 REMARK 500 GLU C 63 CD GLU C 63 OE1 0.092 REMARK 500 TYR D 61 CE1 TYR D 61 CZ -0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN B 23 C - N - CA ANGL. DEV. = -15.9 DEGREES REMARK 500 GLN B 23 C - N - CA ANGL. DEV. = -15.9 DEGREES REMARK 500 LEU C 81 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG D 101 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN C 119 27.80 48.06 REMARK 500 ASP C 156 32.29 -77.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA B 14 -12.45 REMARK 500 ALA B 14 -12.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 201 DBREF 4OYD A 2 158 UNP P0C6Z1 EAR_EBVA8 2 158 DBREF 4OYD B 1 117 PDB 4OYD 4OYD 1 117 DBREF 4OYD C 2 158 UNP P0C6Z1 EAR_EBVA8 2 158 DBREF 4OYD D 1 117 PDB 4OYD 4OYD 1 117 SEQADV 4OYD SER A 1 UNP P0C6Z1 EXPRESSION TAG SEQADV 4OYD SER C 1 UNP P0C6Z1 EXPRESSION TAG SEQRES 1 A 158 SER ALA TYR SER THR ARG GLU ILE LEU LEU ALA LEU CYS SEQRES 2 A 158 ILE ARG ASP SER ARG VAL HIS GLY ASN GLY THR LEU HIS SEQRES 3 A 158 PRO VAL LEU GLU LEU ALA ALA ARG GLU THR PRO LEU ARG SEQRES 4 A 158 LEU SER PRO GLU ASP THR VAL VAL LEU ARG TYR HIS VAL SEQRES 5 A 158 LEU LEU GLU GLU ILE ILE GLU ARG ASN SER GLU THR PHE SEQRES 6 A 158 THR GLU THR TRP ASN ARG PHE ILE THR HIS THR GLU HIS SEQRES 7 A 158 VAL ASP LEU ASP PHE ASN SER VAL PHE LEU GLU ILE PHE SEQRES 8 A 158 HIS ARG GLY ASP PRO SER LEU GLY ARG ALA LEU ALA TRP SEQRES 9 A 158 MET ALA TRP CYS MET HIS ALA CYS ARG THR LEU CYS CYS SEQRES 10 A 158 ASN GLN SER THR PRO TYR TYR VAL VAL ASP LEU SER VAL SEQRES 11 A 158 ARG GLY MET LEU GLU ALA SER GLU GLY LEU ASP GLY TRP SEQRES 12 A 158 ILE HIS GLN GLN GLY GLY TRP SER THR LEU ILE GLU ASP SEQRES 13 A 158 ASN ILE SEQRES 1 B 117 ALA ASP PRO LYS LYS VAL LEU ASP LYS ALA LYS ASP GLN SEQRES 2 B 117 ALA GLU ASN ARG VAL ARG GLU LEU LYS GLN LYS LEU GLU SEQRES 3 B 117 GLU LEU TYR LYS GLU ALA ARG LYS LEU ASP LEU THR GLN SEQRES 4 B 117 GLU MET ARG ARG LYS LEU GLU LEU ARG TYR ILE ALA ALA SEQRES 5 B 117 MET LEU MET ALA ILE GLY ASP ILE TYR ASN ALA ILE ARG SEQRES 6 B 117 GLN ALA LYS GLN GLU ALA ASP LYS LEU LYS LYS ALA GLY SEQRES 7 B 117 LEU VAL ASN SER GLN GLN LEU ASP GLU LEU LYS ARG ARG SEQRES 8 B 117 LEU GLU GLU LEU LYS GLU GLU ALA SER ARG LYS ALA ARG SEQRES 9 B 117 ASP TYR GLY ARG GLU PHE GLN LEU LYS LEU GLU TYR GLY SEQRES 1 C 158 SER ALA TYR SER THR ARG GLU ILE LEU LEU ALA LEU CYS SEQRES 2 C 158 ILE ARG ASP SER ARG VAL HIS GLY ASN GLY THR LEU HIS SEQRES 3 C 158 PRO VAL LEU GLU LEU ALA ALA ARG GLU THR PRO LEU ARG SEQRES 4 C 158 LEU SER PRO GLU ASP THR VAL VAL LEU ARG TYR HIS VAL SEQRES 5 C 158 LEU LEU GLU GLU ILE ILE GLU ARG ASN SER GLU THR PHE SEQRES 6 C 158 THR GLU THR TRP ASN ARG PHE ILE THR HIS THR GLU HIS SEQRES 7 C 158 VAL ASP LEU ASP PHE ASN SER VAL PHE LEU GLU ILE PHE SEQRES 8 C 158 HIS ARG GLY ASP PRO SER LEU GLY ARG ALA LEU ALA TRP SEQRES 9 C 158 MET ALA TRP CYS MET HIS ALA CYS ARG THR LEU CYS CYS SEQRES 10 C 158 ASN GLN SER THR PRO TYR TYR VAL VAL ASP LEU SER VAL SEQRES 11 C 158 ARG GLY MET LEU GLU ALA SER GLU GLY LEU ASP GLY TRP SEQRES 12 C 158 ILE HIS GLN GLN GLY GLY TRP SER THR LEU ILE GLU ASP SEQRES 13 C 158 ASN ILE SEQRES 1 D 117 ALA ASP PRO LYS LYS VAL LEU ASP LYS ALA LYS ASP GLN SEQRES 2 D 117 ALA GLU ASN ARG VAL ARG GLU LEU LYS GLN LYS LEU GLU SEQRES 3 D 117 GLU LEU TYR LYS GLU ALA ARG LYS LEU ASP LEU THR GLN SEQRES 4 D 117 GLU MET ARG ARG LYS LEU GLU LEU ARG TYR ILE ALA ALA SEQRES 5 D 117 MET LEU MET ALA ILE GLY ASP ILE TYR ASN ALA ILE ARG SEQRES 6 D 117 GLN ALA LYS GLN GLU ALA ASP LYS LEU LYS LYS ALA GLY SEQRES 7 D 117 LEU VAL ASN SER GLN GLN LEU ASP GLU LEU LYS ARG ARG SEQRES 8 D 117 LEU GLU GLU LEU LYS GLU GLU ALA SER ARG LYS ALA ARG SEQRES 9 D 117 ASP TYR GLY ARG GLU PHE GLN LEU LYS LEU GLU TYR GLY HET EDO D 201 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *165(H2 O) HELIX 1 AA1 SER A 4 ARG A 18 1 15 HELIX 2 AA2 HIS A 26 THR A 36 1 11 HELIX 3 AA3 ASP A 44 ASN A 61 1 18 HELIX 4 AA4 ASN A 61 THR A 74 1 14 HELIX 5 AA5 HIS A 78 HIS A 92 1 15 HELIX 6 AA6 SER A 97 ASN A 118 1 22 HELIX 7 AA7 PRO A 122 GLU A 138 1 17 HELIX 8 AA8 LEU A 140 GLN A 147 1 8 HELIX 9 AA9 GLY A 148 ILE A 154 1 7 HELIX 10 AB1 ASP B 2 ARG B 33 1 32 HELIX 11 AB2 THR B 38 ALA B 77 1 40 HELIX 12 AB3 ASN B 81 GLY B 117 1 37 HELIX 13 AB4 SER C 4 VAL C 19 1 16 HELIX 14 AB5 HIS C 26 THR C 36 1 11 HELIX 15 AB6 ASP C 44 ASN C 61 1 18 HELIX 16 AB7 ASN C 61 THR C 74 1 14 HELIX 17 AB8 HIS C 78 HIS C 92 1 15 HELIX 18 AB9 SER C 97 ASN C 118 1 22 HELIX 19 AC1 PRO C 122 GLU C 138 1 17 HELIX 20 AC2 LEU C 140 GLN C 147 1 8 HELIX 21 AC3 GLY C 148 ILE C 154 1 7 HELIX 22 AC4 GLU C 155 ILE C 158 5 4 HELIX 23 AC5 ASP D 2 ARG D 33 1 32 HELIX 24 AC6 THR D 38 ALA D 77 1 40 HELIX 25 AC7 ASN D 81 GLY D 117 1 37 CISPEP 1 THR A 36 PRO A 37 0 -10.47 CISPEP 2 THR C 36 PRO C 37 0 -8.34 SITE 1 AC1 2 ASN D 81 SER D 82 CRYST1 52.103 113.869 55.670 90.00 90.03 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019193 0.000000 0.000010 0.00000 SCALE2 0.000000 0.008782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017963 0.00000 MASTER 465 0 1 25 0 0 1 6 0 0 0 44 END