HEADER HYDROLASE/PROTEIN BINDING 20-FEB-14 4OV6 TITLE CRYSTAL STRUCTURE OF PCSK9(53-451) WITH ADNECTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: PRODOMAIN (UNP RESIDUES 60-152); COMPND 5 SYNONYM: PCSK9, NEURAL APOPTOSIS-REGULATED CONVERTASE 1, NARC-1, COMPND 6 PROPROTEIN CONVERTASE 9, PC9, SUBTILISIN/KEXIN-LIKE PROTEASE PC9; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9; COMPND 10 CHAIN: B, E; COMPND 11 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 153-446); COMPND 12 SYNONYM: PCSK9, NEURAL APOPTOSIS-REGULATED CONVERTASE 1, NARC-1, COMPND 13 PROPROTEIN CONVERTASE 9, PC9, SUBTILISIN/KEXIN-LIKE PROTEASE PC9; COMPND 14 EC: 3.4.21.-; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: ADNECTIN; COMPND 18 CHAIN: F, G; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PCSK9, NARC1, PSEC0052; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE CELLS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PACHLT; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: PCSK9, NARC1, PSEC0052; SOURCE 17 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 18 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE CELLS; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PACHLT; SOURCE 23 MOL_ID: 3; SOURCE 24 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 25 ORGANISM_COMMON: HUMAN; SOURCE 26 ORGANISM_TAXID: 9606; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 29 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 30 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 31 EXPRESSION_SYSTEM_PLASMID: PET-9D KEYWDS PCSK9, ADNECTIN, LDL-CHOLESTEROL, HYDROLASE-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.A.KHAN REVDAT 3 22-NOV-17 4OV6 1 REMARK REVDAT 2 16-JUL-14 4OV6 1 JRNL REVDAT 1 02-JUL-14 4OV6 0 JRNL AUTH T.MITCHELL,G.CHAO,D.SITKOFF,F.LO,H.MONSHIZADEGAN,D.MEYERS, JRNL AUTH 2 S.LOW,K.RUSSO,R.DIBELLA,F.DENHEZ,M.GAO,J.MYERS,G.DUKE, JRNL AUTH 3 M.WITMER,B.MIAO,S.P.HO,J.KHAN,R.A.PARKER JRNL TITL PHARMACOLOGIC PROFILE OF THE ADNECTIN BMS-962476, A SMALL JRNL TITL 2 PROTEIN BIOLOGIC ALTERNATIVE TO PCSK9 ANTIBODIES FOR JRNL TITL 3 LOW-DENSITY LIPOPROTEIN LOWERING. JRNL REF J.PHARMACOL.EXP.THER. V. 350 412 2014 JRNL REFN ISSN 0022-3565 JRNL PMID 24917546 JRNL DOI 10.1124/JPET.114.214221 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 41854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2110 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.28 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2670 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2509 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2548 REMARK 3 BIN R VALUE (WORKING SET) : 0.2481 REMARK 3 BIN FREE R VALUE : 0.3144 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.57 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 122 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7005 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.73170 REMARK 3 B22 (A**2) : -9.13100 REMARK 3 B33 (A**2) : 0.39930 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.349 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.391 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.254 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.398 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.258 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OV6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084988. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42093 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 45.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.30700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% V/V PEG200, 1% V/V ETHYLENE REMARK 280 GLYCOL, 0.1 M MES PH 6.5, CRYSTALS HARVESTED NEXT DAY, CRYO- REMARK 280 PROTECTANT: 30% V/V PEG200, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.60000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.60000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 60 REMARK 465 ARG B 165 REMARK 465 TYR B 166 REMARK 465 ARG B 167 REMARK 465 ALA B 168 REMARK 465 ASP B 169 REMARK 465 GLU B 170 REMARK 465 TYR B 171 REMARK 465 GLN B 172 REMARK 465 PRO B 173 REMARK 465 PRO B 174 REMARK 465 ASP B 175 REMARK 465 GLY B 176 REMARK 465 GLY B 177 REMARK 465 PRO E 164 REMARK 465 ARG E 165 REMARK 465 TYR E 166 REMARK 465 ARG E 167 REMARK 465 ALA E 168 REMARK 465 ASP E 169 REMARK 465 GLU E 170 REMARK 465 TYR E 171 REMARK 465 GLN E 172 REMARK 465 PRO E 173 REMARK 465 PRO E 174 REMARK 465 ASP E 175 REMARK 465 GLY E 176 REMARK 465 GLY E 177 REMARK 465 SER E 178 REMARK 465 GLY E 213 REMARK 465 THR E 214 REMARK 465 ARG E 215 REMARK 465 PHE E 216 REMARK 465 HIS E 217 REMARK 465 ARG E 218 REMARK 465 GLN E 219 REMARK 465 ALA E 220 REMARK 465 PRO E 446 REMARK 465 GLU G 95 REMARK 465 ILE G 96 REMARK 465 ASP G 97 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 83 NZ REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 LEU A 88 CG CD1 CD2 REMARK 470 LYS A 125 CE NZ REMARK 470 LEU B 179 CG CD1 CD2 REMARK 470 GLN B 219 CG CD OE1 NE2 REMARK 470 GLN B 278 CG CD OE1 NE2 REMARK 470 ARG B 303 NE CZ NH1 NH2 REMARK 470 GLU B 403 CD OE1 OE2 REMARK 470 THR D 60 OG1 CG2 REMARK 470 LYS D 83 CE NZ REMARK 470 GLU D 85 CG CD OE1 OE2 REMARK 470 GLU E 159 CD OE1 OE2 REMARK 470 LEU E 179 CG CD1 CD2 REMARK 470 LYS E 222 CE NZ REMARK 470 GLU E 405 CD OE1 OE2 REMARK 470 ARG F 6 CD NE CZ NH1 NH2 REMARK 470 ASN F 42 CG OD1 ND2 REMARK 470 ASP F 97 CG OD1 OD2 REMARK 470 LEU G 8 CG CD1 CD2 REMARK 470 GLU G 9 CG CD OE1 OE2 REMARK 470 ASN G 42 CG OD1 ND2 REMARK 470 SER G 43 OG REMARK 470 LYS G 54 CE NZ REMARK 470 LYS G 63 CE NZ REMARK 470 ASP G 67 CG OD1 OD2 REMARK 470 TYR G 92 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 118 -71.77 -83.03 REMARK 500 HIS A 139 -5.98 81.50 REMARK 500 ASP B 186 -165.64 170.40 REMARK 500 LEU B 351 -158.67 -117.46 REMARK 500 GLU B 426 1.01 -69.95 REMARK 500 GLU D 84 -49.39 -29.99 REMARK 500 HIS D 139 -13.82 81.06 REMARK 500 ASP E 186 -161.96 172.10 REMARK 500 GLU E 211 -179.95 -69.03 REMARK 500 LEU E 351 -158.70 -116.82 REMARK 500 TYR F 29 124.27 -175.78 REMARK 500 HIS F 85 -148.65 63.61 REMARK 500 ASN G 42 2.46 82.96 REMARK 500 HIS G 85 -145.37 63.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 244 ALA B 245 -128.64 REMARK 500 GLY E 244 ALA E 245 -120.12 REMARK 500 SER G 26 HIS G 27 -126.91 REMARK 500 GLY G 41 ASN G 42 -36.27 REMARK 500 ASN G 42 SER G 43 139.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 D 201 DBREF 4OV6 A 60 152 UNP Q8NBP7 PCSK9_HUMAN 60 152 DBREF 4OV6 B 153 446 UNP Q8NBP7 PCSK9_HUMAN 153 446 DBREF 4OV6 D 60 152 UNP Q8NBP7 PCSK9_HUMAN 60 152 DBREF 4OV6 E 153 446 UNP Q8NBP7 PCSK9_HUMAN 153 446 DBREF 4OV6 F -1 97 PDB 4OV6 4OV6 -1 97 DBREF 4OV6 G -1 97 PDB 4OV6 4OV6 -1 97 SEQRES 1 A 93 THR THR ALA THR PHE HIS ARG CYS ALA LYS ASP PRO TRP SEQRES 2 A 93 ARG LEU PRO GLY THR TYR VAL VAL VAL LEU LYS GLU GLU SEQRES 3 A 93 THR HIS LEU SER GLN SER GLU ARG THR ALA ARG ARG LEU SEQRES 4 A 93 GLN ALA GLN ALA ALA ARG ARG GLY TYR LEU THR LYS ILE SEQRES 5 A 93 LEU HIS VAL PHE HIS GLY LEU LEU PRO GLY PHE LEU VAL SEQRES 6 A 93 LYS MET SER GLY ASP LEU LEU GLU LEU ALA LEU LYS LEU SEQRES 7 A 93 PRO HIS VAL ASP TYR ILE GLU GLU ASP SER SER VAL PHE SEQRES 8 A 93 ALA GLN SEQRES 1 B 294 SER ILE PRO TRP ASN LEU GLU ARG ILE THR PRO PRO ARG SEQRES 2 B 294 TYR ARG ALA ASP GLU TYR GLN PRO PRO ASP GLY GLY SER SEQRES 3 B 294 LEU VAL GLU VAL TYR LEU LEU ASP THR SER ILE GLN SER SEQRES 4 B 294 ASP HIS ARG GLU ILE GLU GLY ARG VAL MET VAL THR ASP SEQRES 5 B 294 PHE GLU ASN VAL PRO GLU GLU ASP GLY THR ARG PHE HIS SEQRES 6 B 294 ARG GLN ALA SER LYS CYS ASP SER HIS GLY THR HIS LEU SEQRES 7 B 294 ALA GLY VAL VAL SER GLY ARG ASP ALA GLY VAL ALA LYS SEQRES 8 B 294 GLY ALA SER MET ARG SER LEU ARG VAL LEU ASN CYS GLN SEQRES 9 B 294 GLY LYS GLY THR VAL SER GLY THR LEU ILE GLY LEU GLU SEQRES 10 B 294 PHE ILE ARG LYS SER GLN LEU VAL GLN PRO VAL GLY PRO SEQRES 11 B 294 LEU VAL VAL LEU LEU PRO LEU ALA GLY GLY TYR SER ARG SEQRES 12 B 294 VAL LEU ASN ALA ALA CYS GLN ARG LEU ALA ARG ALA GLY SEQRES 13 B 294 VAL VAL LEU VAL THR ALA ALA GLY ASN PHE ARG ASP ASP SEQRES 14 B 294 ALA CYS LEU TYR SER PRO ALA SER ALA PRO GLU VAL ILE SEQRES 15 B 294 THR VAL GLY ALA THR ASN ALA GLN ASP GLN PRO VAL THR SEQRES 16 B 294 LEU GLY THR LEU GLY THR ASN PHE GLY ARG CYS VAL ASP SEQRES 17 B 294 LEU PHE ALA PRO GLY GLU ASP ILE ILE GLY ALA SER SER SEQRES 18 B 294 ASP CYS SER THR CYS PHE VAL SER GLN SER GLY THR SER SEQRES 19 B 294 GLN ALA ALA ALA HIS VAL ALA GLY ILE ALA ALA MET MET SEQRES 20 B 294 LEU SER ALA GLU PRO GLU LEU THR LEU ALA GLU LEU ARG SEQRES 21 B 294 GLN ARG LEU ILE HIS PHE SER ALA LYS ASP VAL ILE ASN SEQRES 22 B 294 GLU ALA TRP PHE PRO GLU ASP GLN ARG VAL LEU THR PRO SEQRES 23 B 294 ASN LEU VAL ALA ALA LEU PRO PRO SEQRES 1 D 93 THR THR ALA THR PHE HIS ARG CYS ALA LYS ASP PRO TRP SEQRES 2 D 93 ARG LEU PRO GLY THR TYR VAL VAL VAL LEU LYS GLU GLU SEQRES 3 D 93 THR HIS LEU SER GLN SER GLU ARG THR ALA ARG ARG LEU SEQRES 4 D 93 GLN ALA GLN ALA ALA ARG ARG GLY TYR LEU THR LYS ILE SEQRES 5 D 93 LEU HIS VAL PHE HIS GLY LEU LEU PRO GLY PHE LEU VAL SEQRES 6 D 93 LYS MET SER GLY ASP LEU LEU GLU LEU ALA LEU LYS LEU SEQRES 7 D 93 PRO HIS VAL ASP TYR ILE GLU GLU ASP SER SER VAL PHE SEQRES 8 D 93 ALA GLN SEQRES 1 E 294 SER ILE PRO TRP ASN LEU GLU ARG ILE THR PRO PRO ARG SEQRES 2 E 294 TYR ARG ALA ASP GLU TYR GLN PRO PRO ASP GLY GLY SER SEQRES 3 E 294 LEU VAL GLU VAL TYR LEU LEU ASP THR SER ILE GLN SER SEQRES 4 E 294 ASP HIS ARG GLU ILE GLU GLY ARG VAL MET VAL THR ASP SEQRES 5 E 294 PHE GLU ASN VAL PRO GLU GLU ASP GLY THR ARG PHE HIS SEQRES 6 E 294 ARG GLN ALA SER LYS CYS ASP SER HIS GLY THR HIS LEU SEQRES 7 E 294 ALA GLY VAL VAL SER GLY ARG ASP ALA GLY VAL ALA LYS SEQRES 8 E 294 GLY ALA SER MET ARG SER LEU ARG VAL LEU ASN CYS GLN SEQRES 9 E 294 GLY LYS GLY THR VAL SER GLY THR LEU ILE GLY LEU GLU SEQRES 10 E 294 PHE ILE ARG LYS SER GLN LEU VAL GLN PRO VAL GLY PRO SEQRES 11 E 294 LEU VAL VAL LEU LEU PRO LEU ALA GLY GLY TYR SER ARG SEQRES 12 E 294 VAL LEU ASN ALA ALA CYS GLN ARG LEU ALA ARG ALA GLY SEQRES 13 E 294 VAL VAL LEU VAL THR ALA ALA GLY ASN PHE ARG ASP ASP SEQRES 14 E 294 ALA CYS LEU TYR SER PRO ALA SER ALA PRO GLU VAL ILE SEQRES 15 E 294 THR VAL GLY ALA THR ASN ALA GLN ASP GLN PRO VAL THR SEQRES 16 E 294 LEU GLY THR LEU GLY THR ASN PHE GLY ARG CYS VAL ASP SEQRES 17 E 294 LEU PHE ALA PRO GLY GLU ASP ILE ILE GLY ALA SER SER SEQRES 18 E 294 ASP CYS SER THR CYS PHE VAL SER GLN SER GLY THR SER SEQRES 19 E 294 GLN ALA ALA ALA HIS VAL ALA GLY ILE ALA ALA MET MET SEQRES 20 E 294 LEU SER ALA GLU PRO GLU LEU THR LEU ALA GLU LEU ARG SEQRES 21 E 294 GLN ARG LEU ILE HIS PHE SER ALA LYS ASP VAL ILE ASN SEQRES 22 E 294 GLU ALA TRP PHE PRO GLU ASP GLN ARG VAL LEU THR PRO SEQRES 23 E 294 ASN LEU VAL ALA ALA LEU PRO PRO SEQRES 1 F 99 GLY VAL SER ASP VAL PRO ARG ASP LEU GLU VAL VAL ALA SEQRES 2 F 99 ALA THR PRO THR SER LEU LEU ILE SER TRP PRO PRO PRO SEQRES 3 F 99 SER HIS GLY TYR GLY TYR TYR ARG ILE THR TYR GLY GLU SEQRES 4 F 99 THR GLY GLY ASN SER PRO VAL GLN GLU PHE THR VAL PRO SEQRES 5 F 99 PRO GLY LYS GLY THR ALA THR ILE SER GLY LEU LYS PRO SEQRES 6 F 99 GLY VAL ASP TYR THR ILE THR VAL TYR ALA VAL GLU TYR SEQRES 7 F 99 PRO TYR LYS HIS SER GLY TYR TYR HIS ARG PRO ILE SER SEQRES 8 F 99 ILE ASN TYR ARG THR GLU ILE ASP SEQRES 1 G 99 GLY VAL SER ASP VAL PRO ARG ASP LEU GLU VAL VAL ALA SEQRES 2 G 99 ALA THR PRO THR SER LEU LEU ILE SER TRP PRO PRO PRO SEQRES 3 G 99 SER HIS GLY TYR GLY TYR TYR ARG ILE THR TYR GLY GLU SEQRES 4 G 99 THR GLY GLY ASN SER PRO VAL GLN GLU PHE THR VAL PRO SEQRES 5 G 99 PRO GLY LYS GLY THR ALA THR ILE SER GLY LEU LYS PRO SEQRES 6 G 99 GLY VAL ASP TYR THR ILE THR VAL TYR ALA VAL GLU TYR SEQRES 7 G 99 PRO TYR LYS HIS SER GLY TYR TYR HIS ARG PRO ILE SER SEQRES 8 G 99 ILE ASN TYR ARG THR GLU ILE ASP HET EDO A 201 4 HET EDO B 501 4 HET EDO B 502 4 HET PG4 B 503 13 HET PG4 D 201 13 HET EDO E 501 4 HET EDO E 502 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 7 EDO 5(C2 H6 O2) FORMUL 10 PG4 2(C8 H18 O5) FORMUL 14 HOH *130(H2 O) HELIX 1 1 LYS A 69 PRO A 71 5 3 HELIX 2 2 SER A 89 ARG A 105 1 17 HELIX 3 3 SER A 127 ASP A 129 5 3 HELIX 4 4 LEU A 130 LYS A 136 1 7 HELIX 5 5 PRO B 155 ILE B 161 1 7 HELIX 6 6 GLY B 213 HIS B 217 5 5 HELIX 7 7 ASP B 224 GLY B 236 1 13 HELIX 8 8 VAL B 261 GLN B 278 1 18 HELIX 9 9 SER B 294 ALA B 307 1 14 HELIX 10 10 ASP B 321 CYS B 323 5 3 HELIX 11 11 GLY B 384 GLU B 403 1 20 HELIX 12 12 THR B 407 SER B 419 1 13 HELIX 13 13 ASN B 425 PHE B 429 5 5 HELIX 14 14 PRO B 430 ARG B 434 5 5 HELIX 15 15 LYS D 69 PRO D 71 5 3 HELIX 16 16 HIS D 87 ARG D 105 1 19 HELIX 17 17 SER D 127 ASP D 129 5 3 HELIX 18 18 LEU D 130 LYS D 136 1 7 HELIX 19 19 PRO E 155 ILE E 161 1 7 HELIX 20 20 ASP E 224 GLY E 236 1 13 HELIX 21 21 VAL E 261 GLN E 278 1 18 HELIX 22 22 SER E 294 ALA E 307 1 14 HELIX 23 23 ASP E 321 CYS E 323 5 3 HELIX 24 24 GLY E 384 GLU E 403 1 20 HELIX 25 25 THR E 407 SER E 419 1 13 HELIX 26 26 ASN E 425 PHE E 429 5 5 HELIX 27 27 PRO E 430 ARG E 434 5 5 HELIX 28 28 PRO F 51 LYS F 54 5 4 HELIX 29 29 PRO G 51 LYS G 54 5 4 SHEET 1 A 3 THR A 63 HIS A 65 0 SHEET 2 A 3 VAL A 140 ALA A 151 1 O ILE A 143 N HIS A 65 SHEET 3 A 3 LYS B 258 THR B 260 -1 O GLY B 259 N VAL A 149 SHEET 1 B 6 LYS A 110 PHE A 115 0 SHEET 2 B 6 GLY A 121 LYS A 125 -1 O LEU A 123 N HIS A 113 SHEET 3 B 6 ARG A 73 LEU A 82 -1 N VAL A 80 O PHE A 122 SHEET 4 B 6 VAL A 140 ALA A 151 -1 O TYR A 142 N VAL A 81 SHEET 5 B 6 LEU B 289 GLY B 292 -1 O ALA B 290 N PHE A 150 SHEET 6 B 6 TYR B 325 SER B 326 -1 O SER B 326 N GLY B 291 SHEET 1 C 7 VAL B 200 GLU B 206 0 SHEET 2 C 7 SER B 246 ARG B 251 1 O SER B 249 N MET B 201 SHEET 3 C 7 GLU B 181 ASP B 186 1 N LEU B 184 O ARG B 248 SHEET 4 C 7 LEU B 283 LEU B 287 1 O VAL B 284 N TYR B 183 SHEET 5 C 7 VAL B 310 ALA B 314 1 O VAL B 312 N VAL B 285 SHEET 6 C 7 ILE B 334 THR B 339 1 O ILE B 334 N LEU B 311 SHEET 7 C 7 LEU B 361 PRO B 364 1 O LEU B 361 N GLY B 337 SHEET 1 D 6 ILE B 368 ALA B 371 0 SHEET 2 D 6 PHE B 379 SER B 383 -1 O VAL B 380 N GLY B 370 SHEET 3 D 6 TYR F 83 ARG F 93 -1 O HIS F 85 N SER B 381 SHEET 4 D 6 ASP F 67 VAL F 75 -1 N ALA F 74 O TYR F 84 SHEET 5 D 6 TYR F 31 GLU F 38 -1 N THR F 35 O THR F 71 SHEET 6 D 6 GLN F 46 VAL F 50 -1 O GLN F 46 N TYR F 36 SHEET 1 E 2 ALA B 420 LYS B 421 0 SHEET 2 E 2 LEU B 440 VAL B 441 -1 O VAL B 441 N ALA B 420 SHEET 1 F 3 THR D 63 HIS D 65 0 SHEET 2 F 3 VAL D 140 ALA D 151 1 O ILE D 143 N HIS D 65 SHEET 3 F 3 LYS E 258 THR E 260 -1 O GLY E 259 N VAL D 149 SHEET 1 G 6 LYS D 110 PHE D 115 0 SHEET 2 G 6 GLY D 121 LYS D 125 -1 O LEU D 123 N HIS D 113 SHEET 3 G 6 ARG D 73 LEU D 82 -1 N VAL D 80 O PHE D 122 SHEET 4 G 6 VAL D 140 ALA D 151 -1 O ASP D 141 N VAL D 81 SHEET 5 G 6 LEU E 289 GLY E 292 -1 O ALA E 290 N PHE D 150 SHEET 6 G 6 TYR E 325 SER E 326 -1 O SER E 326 N GLY E 291 SHEET 1 H 7 VAL E 200 GLU E 206 0 SHEET 2 H 7 SER E 246 ARG E 251 1 O SER E 249 N MET E 201 SHEET 3 H 7 GLU E 181 ASP E 186 1 N LEU E 184 O ARG E 248 SHEET 4 H 7 LEU E 283 LEU E 287 1 O VAL E 284 N TYR E 183 SHEET 5 H 7 VAL E 310 ALA E 314 1 O VAL E 312 N VAL E 285 SHEET 6 H 7 ILE E 334 THR E 339 1 O ILE E 334 N LEU E 311 SHEET 7 H 7 LEU E 361 PRO E 364 1 O LEU E 361 N GLY E 337 SHEET 1 I 6 ILE E 368 ALA E 371 0 SHEET 2 I 6 PHE E 379 SER E 383 -1 O VAL E 380 N GLY E 370 SHEET 3 I 6 TYR G 83 ARG G 93 -1 O HIS G 85 N SER E 381 SHEET 4 I 6 ASP G 67 VAL G 75 -1 N ALA G 74 O TYR G 84 SHEET 5 I 6 TYR G 31 GLU G 38 -1 N THR G 35 O THR G 71 SHEET 6 I 6 GLN G 46 VAL G 50 -1 O GLN G 46 N TYR G 36 SHEET 1 J 2 ALA E 420 LYS E 421 0 SHEET 2 J 2 LEU E 440 VAL E 441 -1 O VAL E 441 N ALA E 420 SHEET 1 K 3 GLU F 9 ALA F 13 0 SHEET 2 K 3 LEU F 18 SER F 21 -1 O LEU F 19 N ALA F 12 SHEET 3 K 3 THR F 56 ILE F 59 -1 O ILE F 59 N LEU F 18 SHEET 1 L 3 GLU G 9 ALA G 13 0 SHEET 2 L 3 LEU G 18 SER G 21 -1 O LEU G 19 N ALA G 12 SHEET 3 L 3 THR G 56 ILE G 59 -1 O ILE G 59 N LEU G 18 SSBOND 1 CYS B 223 CYS B 255 1555 1555 2.58 SSBOND 2 CYS B 323 CYS B 358 1555 1555 2.77 SSBOND 3 CYS B 375 CYS B 378 1555 1555 2.80 SSBOND 4 CYS E 223 CYS E 255 1555 1555 2.58 SSBOND 5 CYS E 323 CYS E 358 1555 1555 2.81 SSBOND 6 CYS E 375 CYS E 378 1555 1555 2.88 CISPEP 1 SER B 326 PRO B 327 0 2.97 CISPEP 2 SER E 326 PRO E 327 0 2.13 CISPEP 3 TYR F 29 GLY F 30 0 -8.38 SITE 1 AC1 4 TRP A 72 PHE A 150 LYS B 258 HIS F 80 SITE 1 AC2 2 PHE B 318 ARG B 319 SITE 1 AC3 1 PHE B 379 SITE 1 AC4 3 GLN B 413 ILE B 416 GLN E 413 SITE 1 AC5 4 LEU D 108 LYS D 125 MET D 126 HOH D 308 CRYST1 75.200 118.600 168.700 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013298 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005928 0.00000 MASTER 379 0 7 29 54 0 5 6 0 0 0 78 END