HEADER OXIDOREDUCTASE 13-FEB-14 4OT7 TITLE X-STRUCTURE OF A VARIANT OF NCR FROM ZYMOMONAS MOBILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADH:FLAVIN OXIDOREDUCTASE/NADH OXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-227, 241-358; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS; SOURCE 3 ORGANISM_TAXID: 264203; SOURCE 4 STRAIN: ATCC 31821 / ZM4 / CP4; SOURCE 5 GENE: ZMO1885; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A(+) KEYWDS ALPHA-/BETA-HYDROLASE FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GENZ,N.STRATER REVDAT 2 23-AUG-17 4OT7 1 SOURCE REMARK REVDAT 1 18-FEB-15 4OT7 0 JRNL AUTH S.REICH,M.WIDMANN,M.GENZ,B.M.NESTL,B.HAUER JRNL TITL SURFACE LOOPS REPRESENTING ENZYME MODIFYING ELEMENT IN THE JRNL TITL 2 FIELD OF TUNING ENZYME PROPERTIES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 45627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.000 REMARK 3 FREE R VALUE TEST SET COUNT : 461 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3331 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.3850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2419 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.41000 REMARK 3 B22 (A**2) : -1.41000 REMARK 3 B33 (A**2) : 4.56000 REMARK 3 B12 (A**2) : -1.41000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.388 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2581 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2465 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3524 ; 2.051 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5671 ; 0.954 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 323 ; 7.223 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;37.613 ;23.220 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 418 ;14.365 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.212 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2911 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 595 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OT7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46089 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 39.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: ARP/WARP REMARK 200 STARTING MODEL: PDB ENTRY 4A3U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, 1.0 M LITHIUM REMARK 280 CHLORIDE, 21% PEG 6000, PH 5.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.55000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.10000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.10000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 632 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 713 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 PRO A 107 REMARK 465 SER A 108 REMARK 465 ASN A 109 REMARK 465 VAL A 110 REMARK 465 SER A 111 REMARK 465 GLY A 112 REMARK 465 MET A 113 REMARK 465 GLN A 114 REMARK 465 PRO A 115 REMARK 465 VAL A 116 REMARK 465 ALA A 117 REMARK 465 PRO A 118 REMARK 465 SER A 119 REMARK 465 ALA A 120 REMARK 465 SER A 121 REMARK 465 GLN A 122 REMARK 465 ALA A 123 REMARK 465 PRO A 124 REMARK 465 GLY A 125 REMARK 465 LEU A 126 REMARK 465 GLY A 127 REMARK 465 HIS A 128 REMARK 465 THR A 129 REMARK 465 TYR A 130 REMARK 465 ASP A 131 REMARK 465 GLY A 132 REMARK 465 LYS A 133 REMARK 465 LYS A 134 REMARK 465 PRO A 135 REMARK 465 TYR A 136 REMARK 465 ASP A 137 REMARK 465 VAL A 138 REMARK 465 ALA A 139 REMARK 465 ARG A 140 REMARK 465 ARG A 184 REMARK 465 ASP A 185 REMARK 465 SER A 186 REMARK 465 THR A 187 REMARK 465 ASN A 188 REMARK 465 HIS A 189 REMARK 465 ARG A 190 REMARK 465 HIS A 191 REMARK 465 ASP A 192 REMARK 465 SER A 233 REMARK 465 MET A 234 REMARK 465 SER A 235 REMARK 465 GLY A 236 REMARK 465 GLY A 237 REMARK 465 ALA A 238 REMARK 465 GLU A 239 REMARK 465 THR A 240 REMARK 465 GLY A 360 REMARK 465 ASP A 361 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 176 N GLY A 176 CA 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 67 C - N - CA ANGL. DEV. = -18.6 DEGREES REMARK 500 PRO A 67 C - N - CD ANGL. DEV. = 18.2 DEGREES REMARK 500 ASP A 90 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 90 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 159 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 159 NE - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 GLY A 176 C - N - CA ANGL. DEV. = -14.1 DEGREES REMARK 500 ASP A 255 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 MET A 263 CA - CB - CG ANGL. DEV. = -10.6 DEGREES REMARK 500 ASP A 313 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 326 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 32.84 -96.64 REMARK 500 TYR A 68 -3.46 67.44 REMARK 500 ILE A 72 19.25 -142.67 REMARK 500 LEU A 144 -37.71 -37.58 REMARK 500 LEU A 178 -26.72 75.85 REMARK 500 GLN A 244 -34.61 -38.17 REMARK 500 PRO A 290 -177.69 -64.46 REMARK 500 GLN A 296 111.56 121.89 REMARK 500 ASP A 326 44.06 -103.24 REMARK 500 TYR A 353 -71.80 -130.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 64 GLY A 65 -43.50 REMARK 500 GLY A 176 TYR A 177 -142.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A3U RELATED DB: PDB REMARK 900 WILD TYPE DBREF 4OT7 A 1 227 UNP Q5NLA1 Q5NLA1_ZYMMO 1 227 DBREF 4OT7 A 244 361 UNP Q5NLA1 Q5NLA1_ZYMMO 241 358 SEQADV 4OT7 MET A -19 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 GLY A -18 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 SER A -17 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 SER A -16 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 HIS A -15 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 HIS A -14 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 HIS A -13 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 HIS A -12 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 HIS A -11 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 HIS A -10 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 SER A -9 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 SER A -8 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 GLY A -7 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 LEU A -6 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 VAL A -5 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 PRO A -4 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 ARG A -3 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 GLY A -2 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 SER A -1 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 HIS A 0 UNP Q5NLA1 EXPRESSION TAG SEQADV 4OT7 TYR A 228 UNP Q5NLA1 LINKER SEQADV 4OT7 GLY A 229 UNP Q5NLA1 LINKER SEQADV 4OT7 VAL A 230 UNP Q5NLA1 LINKER SEQADV 4OT7 PHE A 231 UNP Q5NLA1 LINKER SEQADV 4OT7 ASN A 232 UNP Q5NLA1 LINKER SEQADV 4OT7 SER A 233 UNP Q5NLA1 LINKER SEQADV 4OT7 MET A 234 UNP Q5NLA1 LINKER SEQADV 4OT7 SER A 235 UNP Q5NLA1 LINKER SEQADV 4OT7 GLY A 236 UNP Q5NLA1 LINKER SEQADV 4OT7 GLY A 237 UNP Q5NLA1 LINKER SEQADV 4OT7 ALA A 238 UNP Q5NLA1 LINKER SEQADV 4OT7 GLU A 239 UNP Q5NLA1 LINKER SEQADV 4OT7 THR A 240 UNP Q5NLA1 LINKER SEQADV 4OT7 GLY A 241 UNP Q5NLA1 LINKER SEQADV 4OT7 ILE A 242 UNP Q5NLA1 LINKER SEQADV 4OT7 VAL A 243 UNP Q5NLA1 LINKER SEQRES 1 A 381 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 381 LEU VAL PRO ARG GLY SER HIS MET PRO SER LEU PHE ASP SEQRES 3 A 381 PRO ILE ARG PHE GLY ALA PHE THR ALA LYS ASN ARG ILE SEQRES 4 A 381 TRP MET ALA PRO LEU THR ARG GLY ARG ALA THR ARG ASP SEQRES 5 A 381 HIS VAL PRO THR GLU ILE MET ALA GLU TYR TYR ALA GLN SEQRES 6 A 381 ARG ALA SER ALA GLY LEU ILE ILE SER GLU ALA THR GLY SEQRES 7 A 381 ILE SER GLN GLU GLY LEU GLY TRP PRO TYR ALA PRO GLY SEQRES 8 A 381 ILE TRP SER ASP ALA GLN VAL GLU ALA TRP LEU PRO ILE SEQRES 9 A 381 THR GLN ALA VAL HIS ASP ALA GLY GLY LEU ILE PHE ALA SEQRES 10 A 381 GLN LEU TRP HIS MET GLY ARG MET VAL PRO SER ASN VAL SEQRES 11 A 381 SER GLY MET GLN PRO VAL ALA PRO SER ALA SER GLN ALA SEQRES 12 A 381 PRO GLY LEU GLY HIS THR TYR ASP GLY LYS LYS PRO TYR SEQRES 13 A 381 ASP VAL ALA ARG ALA LEU ARG LEU ASP GLU ILE PRO ARG SEQRES 14 A 381 LEU LEU ASP ASP TYR GLU LYS ALA ALA ARG HIS ALA LEU SEQRES 15 A 381 LYS ALA GLY PHE ASP GLY VAL GLN ILE HIS ALA ALA ASN SEQRES 16 A 381 GLY TYR LEU ILE ASP GLU PHE ILE ARG ASP SER THR ASN SEQRES 17 A 381 HIS ARG HIS ASP GLU TYR GLY GLY ALA VAL GLU ASN ARG SEQRES 18 A 381 ILE ARG LEU LEU LYS ASP VAL THR GLU ARG VAL ILE ALA SEQRES 19 A 381 THR ILE GLY LYS GLU ARG THR ALA VAL ARG LEU SER PRO SEQRES 20 A 381 TYR GLY VAL PHE ASN SER MET SER GLY GLY ALA GLU THR SEQRES 21 A 381 GLY ILE VAL GLN VAL PHE ILE PRO ALA ALA LYS MET LEU SEQRES 22 A 381 SER ASP LEU ASP ILE ALA PHE LEU GLY MET ARG GLU GLY SEQRES 23 A 381 ALA VAL ASP GLY THR PHE GLY LYS THR ASP GLN PRO LYS SEQRES 24 A 381 LEU SER PRO GLU ILE ARG LYS VAL PHE LYS PRO PRO LEU SEQRES 25 A 381 VAL LEU ASN GLN ASP TYR THR PHE GLU THR ALA GLN ALA SEQRES 26 A 381 ALA LEU ASP SER GLY VAL ALA ASP ALA ILE SER PHE GLY SEQRES 27 A 381 ARG PRO PHE ILE GLY ASN PRO ASP LEU PRO ARG ARG PHE SEQRES 28 A 381 PHE GLU LYS ALA PRO LEU THR LYS ASP VAL ILE GLU THR SEQRES 29 A 381 TRP TYR THR GLN THR PRO LYS GLY TYR THR ASP TYR PRO SEQRES 30 A 381 LEU LEU GLY ASP HET FMN A 401 31 HET CL A 402 1 HET CL A 403 1 HET CL A 404 1 HET CL A 405 1 HET CL A 406 1 HET CL A 407 1 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM CL CHLORIDE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 CL 6(CL 1-) FORMUL 9 HOH *249(H2 O) HELIX 1 1 THR A 36 ARG A 46 1 11 HELIX 2 2 SER A 74 ALA A 91 1 18 HELIX 3 3 ARG A 143 ASP A 145 5 3 HELIX 4 4 GLU A 146 ALA A 164 1 19 HELIX 5 5 ALA A 197 ILE A 202 1 6 HELIX 6 6 ILE A 202 GLY A 217 1 16 HELIX 7 7 ILE A 242 ASP A 257 1 16 HELIX 8 8 LEU A 280 PHE A 288 1 9 HELIX 9 9 THR A 299 SER A 309 1 11 HELIX 10 10 GLY A 318 ASN A 324 1 7 HELIX 11 11 ASP A 326 LYS A 334 1 9 HELIX 12 12 VAL A 341 TRP A 345 5 5 SHEET 1 A 2 ILE A 8 PHE A 10 0 SHEET 2 A 2 PHE A 13 ALA A 15 -1 O PHE A 13 N PHE A 10 SHEET 1 B10 THR A 57 GLY A 58 0 SHEET 2 B10 ILE A 95 TRP A 100 1 O TRP A 100 N THR A 57 SHEET 3 B10 GLY A 168 ALA A 174 1 O GLN A 170 N LEU A 99 SHEET 4 B10 THR A 221 SER A 226 1 O ARG A 224 N ALA A 173 SHEET 5 B10 PHE A 260 ARG A 264 1 O GLY A 262 N VAL A 223 SHEET 6 B10 LEU A 292 ASN A 295 1 O VAL A 293 N LEU A 261 SHEET 7 B10 ALA A 314 PHE A 317 1 O SER A 316 N LEU A 294 SHEET 8 B10 ILE A 19 MET A 21 1 N TRP A 20 O PHE A 317 SHEET 9 B10 ILE A 52 ILE A 53 1 O ILE A 53 N MET A 21 SHEET 10 B10 ILE A 95 TRP A 100 1 O PHE A 96 N ILE A 52 SITE 1 AC1 19 ALA A 22 PRO A 23 LEU A 24 THR A 25 SITE 2 AC1 19 ARG A 31 ALA A 56 GLN A 98 ARG A 224 SITE 3 AC1 19 ARG A 264 PHE A 272 ASN A 295 GLN A 296 SITE 4 AC1 19 ASP A 297 PHE A 317 GLY A 318 ARG A 319 SITE 5 AC1 19 TYR A 346 HOH A 503 HOH A 689 SITE 1 AC2 3 ARG A 9 HOH A 569 HOH A 720 SITE 1 AC3 5 LEU A 162 LYS A 163 GLY A 217 LYS A 218 SITE 2 AC3 5 GLU A 219 SITE 1 AC4 3 THR A 36 GLU A 37 LYS A 339 SITE 1 AC5 4 GLY A 58 ILE A 59 SER A 60 TRP A 100 SITE 1 AC6 1 ASP A 75 SITE 1 AC7 4 TYR A 68 ARG A 319 ASP A 340 HOH A 656 CRYST1 121.240 121.240 58.650 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008248 0.004762 0.000000 0.00000 SCALE2 0.000000 0.009524 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017050 0.00000 MASTER 454 0 7 12 12 0 12 6 0 0 0 30 END