HEADER TRANSFERASE 10-FEB-14 4OQM TITLE CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE 1 TITLE 2 IN COMPLEX WITH F-ARA-EDU COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 45-376; COMPND 5 EC: 2.7.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 1; SOURCE 3 ORGANISM_COMMON: HHV-1; SOURCE 4 ORGANISM_TAXID: 10299; SOURCE 5 STRAIN: 17; SOURCE 6 GENE: TK, TK (UL23), UL23; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-2 KEYWDS DNA SYNTHESIS, THYMIDINE KINASE, ATP-BINDING, NUCLEOTIDE-BINDING, KEYWDS 2 TRANSFERASE, 5-ETHYNYLURIDINE NUCLEOSIDE DERIVATIVE EXPDTA X-RAY DIFFRACTION AUTHOR L.PERNOT,A.B.NEEF,Y.WESTERMAIER,R.PEROZZO,N.LUEDTKE,L.SCAPOZZA REVDAT 1 13-AUG-14 4OQM 0 JRNL AUTH L.PERNOT,A.B.NEEF,Y.WESTERMAIER,R.PEROZZO,N.LUEDTKE, JRNL AUTH 2 L.SCAPOZZA JRNL TITL CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX JRNL TITL 2 VIRUS TYPE 1 IN COMPLEX WITH F-ARA-EDU JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.B.NEEF,N.W.LUEDTKE REMARK 1 TITL DYNAMIC METABOLIC LABELING OF DNA IN VIVO WITH ARABINOSYL REMARK 1 TITL 2 NUCLEOSIDES. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 108 20404 2011 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 22143759 REMARK 1 DOI 10.1073/PNAS.1101126108 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 35031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0972 - 5.1693 1.00 2793 148 0.1896 0.2262 REMARK 3 2 5.1693 - 4.1045 1.00 2685 142 0.1455 0.1917 REMARK 3 3 4.1045 - 3.5860 1.00 2657 143 0.1513 0.1949 REMARK 3 4 3.5860 - 3.2583 1.00 2645 142 0.1579 0.2054 REMARK 3 5 3.2583 - 3.0249 0.99 2637 139 0.1722 0.2132 REMARK 3 6 3.0249 - 2.8466 0.98 2553 142 0.1782 0.2173 REMARK 3 7 2.8466 - 2.7041 0.97 2534 132 0.1693 0.2108 REMARK 3 8 2.7041 - 2.5864 0.96 2516 138 0.1716 0.2630 REMARK 3 9 2.5864 - 2.4869 0.94 2487 132 0.1698 0.2476 REMARK 3 10 2.4869 - 2.4010 0.94 2437 130 0.1774 0.2672 REMARK 3 11 2.4010 - 2.3260 0.93 2456 130 0.1798 0.2546 REMARK 3 12 2.3260 - 2.2595 0.93 2431 127 0.1827 0.2477 REMARK 3 13 2.2595 - 2.2000 0.93 2426 129 0.1968 0.2767 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4926 REMARK 3 ANGLE : 1.121 6724 REMARK 3 CHIRALITY : 0.073 783 REMARK 3 PLANARITY : 0.006 847 REMARK 3 DIHEDRAL : 12.653 1785 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OQM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-14. REMARK 100 THE RCSB ID CODE IS RCSB084827. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35059 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 39.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : 0.45200 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3F0T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9-1.2M LI2SO4, 1MM DTT, 0.1M HEPES REMARK 280 PH 7.5-8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.72000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.65500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 56.72000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.65500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.95000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 56.72000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.65500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.95000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 56.72000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.65500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 612 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 625 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 617 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 622 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 71 REMARK 465 LEU A 72 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 GLY A 148 REMARK 465 SER A 149 REMARK 465 SER A 150 REMARK 465 HIS A 151 REMARK 465 ALA A 152 REMARK 465 THR A 265 REMARK 465 ALA A 266 REMARK 465 VAL A 267 REMARK 465 PRO A 268 REMARK 465 PRO A 269 REMARK 465 GLN A 270 REMARK 465 GLY A 271 REMARK 465 ALA A 272 REMARK 465 GLU A 273 REMARK 465 PRO A 274 REMARK 465 GLN A 275 REMARK 465 SER A 276 REMARK 465 ASN A 277 REMARK 465 ALA A 278 REMARK 465 GLY A 279 REMARK 465 ALA A 375 REMARK 465 ASN A 376 REMARK 465 LYS B 45 REMARK 465 GLY B 148 REMARK 465 SER B 149 REMARK 465 SER B 150 REMARK 465 HIS B 151 REMARK 465 ALA B 152 REMARK 465 GLN B 221 REMARK 465 ARG B 222 REMARK 465 THR B 265 REMARK 465 ALA B 266 REMARK 465 VAL B 267 REMARK 465 PRO B 268 REMARK 465 PRO B 269 REMARK 465 GLN B 270 REMARK 465 GLY B 271 REMARK 465 ALA B 272 REMARK 465 GLU B 273 REMARK 465 ALA B 375 REMARK 465 ASN B 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 45 CE NZ REMARK 470 THR A 65 OG1 CG2 REMARK 470 GLN A 67 CG CD OE1 NE2 REMARK 470 LEU A 69 CG CD1 CD2 REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 ASP B 211 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 69 2.76 -66.75 REMARK 500 ASP A 76 -45.28 -162.10 REMARK 500 VAL A 90 -63.23 -131.06 REMARK 500 ARG A 163 150.08 82.26 REMARK 500 LEU A 170 -58.03 -144.86 REMARK 500 VAL B 90 -61.45 -135.52 REMARK 500 ARG B 163 148.38 75.63 REMARK 500 LEU B 170 -57.38 -144.76 REMARK 500 LEU B 208 125.05 -176.16 REMARK 500 LYS B 219 -96.94 -107.24 REMARK 500 SER B 263 87.95 -165.60 REMARK 500 GLN B 275 -179.45 -62.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FDU A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FDU B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OQL RELATED DB: PDB REMARK 900 RELATED ID: 4OQN RELATED DB: PDB REMARK 900 RELATED ID: 4OQX RELATED DB: PDB DBREF 4OQM A 45 376 UNP P03176 KITH_HHV11 45 376 DBREF 4OQM B 45 376 UNP P03176 KITH_HHV11 45 376 SEQRES 1 A 332 LYS MET PRO THR LEU LEU ARG VAL TYR ILE ASP GLY PRO SEQRES 2 A 332 HIS GLY MET GLY LYS THR THR THR THR GLN LEU LEU VAL SEQRES 3 A 332 ALA LEU GLY SER ARG ASP ASP ILE VAL TYR VAL PRO GLU SEQRES 4 A 332 PRO MET THR TYR TRP ARG VAL LEU GLY ALA SER GLU THR SEQRES 5 A 332 ILE ALA ASN ILE TYR THR THR GLN HIS ARG LEU ASP GLN SEQRES 6 A 332 GLY GLU ILE SER ALA GLY ASP ALA ALA VAL VAL MET THR SEQRES 7 A 332 SER ALA GLN ILE THR MET GLY MET PRO TYR ALA VAL THR SEQRES 8 A 332 ASP ALA VAL LEU ALA PRO HIS ILE GLY GLY GLU ALA GLY SEQRES 9 A 332 SER SER HIS ALA PRO PRO PRO ALA LEU THR LEU ILE PHE SEQRES 10 A 332 ASP ARG HIS PRO ILE ALA ALA LEU LEU CYS TYR PRO ALA SEQRES 11 A 332 ALA ARG TYR LEU MET GLY SER MET THR PRO GLN ALA VAL SEQRES 12 A 332 LEU ALA PHE VAL ALA LEU ILE PRO PRO THR LEU PRO GLY SEQRES 13 A 332 THR ASN ILE VAL LEU GLY ALA LEU PRO GLU ASP ARG HIS SEQRES 14 A 332 ILE ASP ARG LEU ALA LYS ARG GLN ARG PRO GLY GLU ARG SEQRES 15 A 332 LEU ASP LEU ALA MET LEU ALA ALA ILE ARG ARG VAL TYR SEQRES 16 A 332 GLY LEU LEU ALA ASN THR VAL ARG TYR LEU GLN CYS GLY SEQRES 17 A 332 GLY SER TRP ARG GLU ASP TRP GLY GLN LEU SER GLY THR SEQRES 18 A 332 ALA VAL PRO PRO GLN GLY ALA GLU PRO GLN SER ASN ALA SEQRES 19 A 332 GLY PRO ARG PRO HIS ILE GLY ASP THR LEU PHE THR LEU SEQRES 20 A 332 PHE ARG ALA PRO GLU LEU LEU ALA PRO ASN GLY ASP LEU SEQRES 21 A 332 TYR ASN VAL PHE ALA TRP ALA LEU ASP VAL LEU ALA LYS SEQRES 22 A 332 ARG LEU ARG SER MET HIS VAL PHE ILE LEU ASP TYR ASP SEQRES 23 A 332 GLN SER PRO ALA GLY CYS ARG ASP ALA LEU LEU GLN LEU SEQRES 24 A 332 THR SER GLY MET VAL GLN THR HIS VAL THR THR PRO GLY SEQRES 25 A 332 SER ILE PRO THR ILE CYS ASP LEU ALA ARG THR PHE ALA SEQRES 26 A 332 ARG GLU MET GLY GLU ALA ASN SEQRES 1 B 332 LYS MET PRO THR LEU LEU ARG VAL TYR ILE ASP GLY PRO SEQRES 2 B 332 HIS GLY MET GLY LYS THR THR THR THR GLN LEU LEU VAL SEQRES 3 B 332 ALA LEU GLY SER ARG ASP ASP ILE VAL TYR VAL PRO GLU SEQRES 4 B 332 PRO MET THR TYR TRP ARG VAL LEU GLY ALA SER GLU THR SEQRES 5 B 332 ILE ALA ASN ILE TYR THR THR GLN HIS ARG LEU ASP GLN SEQRES 6 B 332 GLY GLU ILE SER ALA GLY ASP ALA ALA VAL VAL MET THR SEQRES 7 B 332 SER ALA GLN ILE THR MET GLY MET PRO TYR ALA VAL THR SEQRES 8 B 332 ASP ALA VAL LEU ALA PRO HIS ILE GLY GLY GLU ALA GLY SEQRES 9 B 332 SER SER HIS ALA PRO PRO PRO ALA LEU THR LEU ILE PHE SEQRES 10 B 332 ASP ARG HIS PRO ILE ALA ALA LEU LEU CYS TYR PRO ALA SEQRES 11 B 332 ALA ARG TYR LEU MET GLY SER MET THR PRO GLN ALA VAL SEQRES 12 B 332 LEU ALA PHE VAL ALA LEU ILE PRO PRO THR LEU PRO GLY SEQRES 13 B 332 THR ASN ILE VAL LEU GLY ALA LEU PRO GLU ASP ARG HIS SEQRES 14 B 332 ILE ASP ARG LEU ALA LYS ARG GLN ARG PRO GLY GLU ARG SEQRES 15 B 332 LEU ASP LEU ALA MET LEU ALA ALA ILE ARG ARG VAL TYR SEQRES 16 B 332 GLY LEU LEU ALA ASN THR VAL ARG TYR LEU GLN CYS GLY SEQRES 17 B 332 GLY SER TRP ARG GLU ASP TRP GLY GLN LEU SER GLY THR SEQRES 18 B 332 ALA VAL PRO PRO GLN GLY ALA GLU PRO GLN SER ASN ALA SEQRES 19 B 332 GLY PRO ARG PRO HIS ILE GLY ASP THR LEU PHE THR LEU SEQRES 20 B 332 PHE ARG ALA PRO GLU LEU LEU ALA PRO ASN GLY ASP LEU SEQRES 21 B 332 TYR ASN VAL PHE ALA TRP ALA LEU ASP VAL LEU ALA LYS SEQRES 22 B 332 ARG LEU ARG SER MET HIS VAL PHE ILE LEU ASP TYR ASP SEQRES 23 B 332 GLN SER PRO ALA GLY CYS ARG ASP ALA LEU LEU GLN LEU SEQRES 24 B 332 THR SER GLY MET VAL GLN THR HIS VAL THR THR PRO GLY SEQRES 25 B 332 SER ILE PRO THR ILE CYS ASP LEU ALA ARG THR PHE ALA SEQRES 26 B 332 ARG GLU MET GLY GLU ALA ASN HET FDU A 501 19 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET FDU B 501 19 HET SO4 B 502 5 HET SO4 B 503 5 HETNAM FDU 1-(2-DEOXY-2-FLUORO-BETA-D-ARABINOFURANOSYL)-5- HETNAM 2 FDU ETHYNYLPYRIMIDINE-2,4(1H,3H)-DIONE HETNAM SO4 SULFATE ION HETSYN FDU (2'S)-2'-DEOXY-2'-FLUORO-5-ETHYNYLURIDINE FORMUL 3 FDU 2(C11 H11 F N2 O5) FORMUL 4 SO4 6(O4 S 2-) FORMUL 11 HOH *236(H2 O) HELIX 1 1 GLY A 61 LEU A 69 1 9 HELIX 2 2 PRO A 84 VAL A 90 1 7 HELIX 3 3 GLU A 95 GLN A 109 1 15 HELIX 4 4 SER A 113 ALA A 140 1 28 HELIX 5 5 HIS A 164 LEU A 170 1 7 HELIX 6 6 LEU A 170 MET A 179 1 10 HELIX 7 7 THR A 183 LEU A 193 1 11 HELIX 8 8 PRO A 209 ARG A 220 1 12 HELIX 9 9 ASP A 228 CYS A 251 1 24 HELIX 10 10 SER A 254 TRP A 259 1 6 HELIX 11 11 GLY A 260 SER A 263 5 4 HELIX 12 12 HIS A 283 ARG A 293 5 11 HELIX 13 13 ALA A 294 LEU A 298 5 5 HELIX 14 14 TYR A 305 SER A 321 1 17 HELIX 15 15 SER A 332 THR A 344 1 13 HELIX 16 16 SER A 345 MET A 347 5 3 HELIX 17 17 GLY A 356 GLY A 373 1 18 HELIX 18 18 GLY B 61 GLY B 73 1 13 HELIX 19 19 PRO B 84 VAL B 90 1 7 HELIX 20 20 GLU B 95 GLN B 109 1 15 HELIX 21 21 SER B 113 ALA B 140 1 28 HELIX 22 22 PRO B 165 LEU B 170 1 6 HELIX 23 23 LEU B 170 MET B 179 1 10 HELIX 24 24 THR B 183 LEU B 193 1 11 HELIX 25 25 PRO B 209 LYS B 219 1 11 HELIX 26 26 ASP B 228 CYS B 251 1 24 HELIX 27 27 SER B 254 TRP B 259 1 6 HELIX 28 28 GLY B 260 LEU B 262 5 3 HELIX 29 29 HIS B 283 ARG B 293 5 11 HELIX 30 30 ALA B 294 LEU B 298 5 5 HELIX 31 31 TYR B 305 SER B 321 1 17 HELIX 32 32 SER B 332 THR B 344 1 13 HELIX 33 33 SER B 345 MET B 347 5 3 HELIX 34 34 GLY B 356 GLY B 373 1 18 SHEET 1 A 5 ILE A 78 VAL A 81 0 SHEET 2 A 5 LEU A 157 ASP A 162 1 O ILE A 160 N VAL A 81 SHEET 3 A 5 THR A 48 ILE A 54 1 N VAL A 52 O LEU A 159 SHEET 4 A 5 THR A 350 VAL A 352 -1 O THR A 350 N LEU A 49 SHEET 5 A 5 ILE A 143 GLU A 146 -1 N GLY A 144 O HIS A 351 SHEET 1 B 5 ILE A 78 VAL A 81 0 SHEET 2 B 5 LEU A 157 ASP A 162 1 O ILE A 160 N VAL A 81 SHEET 3 B 5 THR A 48 ILE A 54 1 N VAL A 52 O LEU A 159 SHEET 4 B 5 ASN A 202 ALA A 207 1 O VAL A 204 N TYR A 53 SHEET 5 B 5 HIS A 323 ASP A 328 1 O HIS A 323 N ILE A 203 SHEET 1 C 5 ILE B 78 VAL B 81 0 SHEET 2 C 5 LEU B 157 ASP B 162 1 O ASP B 162 N VAL B 81 SHEET 3 C 5 THR B 48 ILE B 54 1 N VAL B 52 O PHE B 161 SHEET 4 C 5 GLN B 349 VAL B 352 -1 O THR B 350 N LEU B 49 SHEET 5 C 5 ILE B 143 ALA B 147 -1 N GLY B 144 O HIS B 351 SHEET 1 D 5 ILE B 78 VAL B 81 0 SHEET 2 D 5 LEU B 157 ASP B 162 1 O ASP B 162 N VAL B 81 SHEET 3 D 5 THR B 48 ILE B 54 1 N VAL B 52 O PHE B 161 SHEET 4 D 5 ASN B 202 ALA B 207 1 O ASN B 202 N TYR B 53 SHEET 5 D 5 HIS B 323 ASP B 328 1 O HIS B 323 N ILE B 203 SITE 1 AC1 15 HIS A 58 GLU A 83 ILE A 97 ILE A 100 SITE 2 AC1 15 TYR A 101 GLN A 125 MET A 128 TYR A 132 SITE 3 AC1 15 ARG A 163 ALA A 168 TYR A 172 ARG A 222 SITE 4 AC1 15 GLU A 225 HOH A 603 HOH A 620 SITE 1 AC2 8 HIS A 58 GLY A 59 MET A 60 GLY A 61 SITE 2 AC2 8 LYS A 62 THR A 63 ARG A 220 ARG A 222 SITE 1 AC3 2 ARG A 212 ARG A 216 SITE 1 AC4 4 HIS A 105 ARG A 226 SER B 74 ARG B 75 SITE 1 AC5 1 ARG A 89 SITE 1 AC6 12 HIS B 58 GLU B 83 TYR B 101 GLN B 125 SITE 2 AC6 12 MET B 128 ARG B 163 ALA B 168 TYR B 172 SITE 3 AC6 12 GLU B 225 HOH B 601 HOH B 610 HOH B 611 SITE 1 AC7 8 HIS B 58 GLY B 59 MET B 60 GLY B 61 SITE 2 AC7 8 LYS B 62 THR B 63 HOH B 610 HOH B 669 SITE 1 AC8 3 LYS B 317 ARG B 320 HOH B 618 CRYST1 113.440 115.310 107.900 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008815 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008672 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009268 0.00000 MASTER 373 0 8 34 20 0 15 6 0 0 0 52 END