HEADER LYASE 27-JAN-14 4OMR TITLE CRYSTAL STRUCTURE OF TFU_1878, A PUTATIVE ENOYL-COA HYDRATASE FROM TITLE 2 THERMOBIFIDA FUSCA YX IN COMPLEX WITH ACETOACETYL-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-COA HYDRATASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.1.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBIFIDA FUSCA; SOURCE 3 ORGANISM_TAXID: 269800; SOURCE 4 STRAIN: YX; SOURCE 5 GENE: TFU_1878; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, HYDRATASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.LANGNER,D.R.COOPER,H.C.CHAPMAN,K.B.HANDING,M.STEAD,B.HILLERICH, AUTHOR 2 M.AHMED,J.B.BONANNO,R.SEIDEL,S.C.ALMO,W.MINOR,NEW YORK STRUCTURAL AUTHOR 3 GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 3 04-AUG-21 4OMR 1 COMPND REMARK SEQADV HET REVDAT 3 2 1 FORMUL LINK SITE ATOM REVDAT 2 22-NOV-17 4OMR 1 REMARK REVDAT 1 02-APR-14 4OMR 0 JRNL AUTH K.M.LANGNER,D.R.COOPER,H.C.CHAPMAN,K.B.HANDING,M.STEAD, JRNL AUTH 2 B.HILLERICH,M.AHMED,J.B.BONANNO,R.SEIDEL,S.C.ALMO,W.MINOR, JRNL AUTH 3 NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) JRNL TITL CRYSTAL STRUCTURE OF TFU_1878, A PUTATIVE ENOYL-COA JRNL TITL 2 HYDRATASE FROM THERMOBIFIDA FUSCA YX IN COMPLEX WITH JRNL TITL 3 ACETOACETYL-COA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1737 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2418 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1874 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.660 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2019 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2007 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2768 ; 1.924 ; 2.021 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4578 ; 0.910 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 267 ; 6.215 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;38.918 ;23.288 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 307 ;11.975 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.060 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 347 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2291 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 431 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1051 ; 1.487 ; 1.547 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1049 ; 1.376 ; 1.543 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1320 ; 1.973 ; 2.297 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 38 REMARK 3 ORIGIN FOR THE GROUP (A): 44.2970 22.6610 76.7680 REMARK 3 T TENSOR REMARK 3 T11: 0.1639 T22: 0.1029 REMARK 3 T33: 0.1135 T12: -0.0083 REMARK 3 T13: 0.0026 T23: -0.0406 REMARK 3 L TENSOR REMARK 3 L11: 1.5256 L22: 1.1617 REMARK 3 L33: 1.5756 L12: 0.1697 REMARK 3 L13: 0.1924 L23: 1.1777 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: 0.0212 S13: 0.1142 REMARK 3 S21: 0.0667 S22: 0.0651 S23: -0.0650 REMARK 3 S31: -0.0896 S32: 0.0635 S33: -0.0662 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): 50.0080 21.6680 71.3380 REMARK 3 T TENSOR REMARK 3 T11: 0.1319 T22: 0.0652 REMARK 3 T33: 0.1164 T12: -0.0286 REMARK 3 T13: 0.0122 T23: -0.0446 REMARK 3 L TENSOR REMARK 3 L11: 2.0265 L22: 2.0256 REMARK 3 L33: 0.6535 L12: -0.7217 REMARK 3 L13: -0.0391 L23: -0.0128 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: 0.0887 S13: 0.1646 REMARK 3 S21: 0.0106 S22: 0.0515 S23: -0.2744 REMARK 3 S31: -0.1333 S32: 0.1574 S33: -0.0508 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3250 24.8200 64.6530 REMARK 3 T TENSOR REMARK 3 T11: 0.2212 T22: 0.1230 REMARK 3 T33: 0.1855 T12: 0.0632 REMARK 3 T13: -0.0253 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 1.3593 L22: 4.9042 REMARK 3 L33: 3.6364 L12: -0.2235 REMARK 3 L13: 0.9193 L23: -0.7546 REMARK 3 S TENSOR REMARK 3 S11: -0.1115 S12: 0.0423 S13: 0.3696 REMARK 3 S21: -0.4097 S22: -0.1165 S23: 0.1376 REMARK 3 S31: -0.4480 S32: -0.2342 S33: 0.2280 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 42.1070 10.8400 61.7190 REMARK 3 T TENSOR REMARK 3 T11: 0.1305 T22: 0.0927 REMARK 3 T33: 0.0982 T12: 0.0091 REMARK 3 T13: 0.0136 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.4237 L22: 0.8454 REMARK 3 L33: 1.0469 L12: -0.1055 REMARK 3 L13: 0.2780 L23: 0.4887 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: 0.0374 S13: 0.0779 REMARK 3 S21: -0.0364 S22: 0.0065 S23: 0.0177 REMARK 3 S31: -0.1511 S32: -0.0375 S33: -0.0237 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 200 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): 52.6210 3.5750 72.8770 REMARK 3 T TENSOR REMARK 3 T11: 0.0816 T22: 0.0333 REMARK 3 T33: 0.0443 T12: 0.0119 REMARK 3 T13: -0.0165 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.6595 L22: 1.1717 REMARK 3 L33: 1.1054 L12: -0.2817 REMARK 3 L13: -0.1413 L23: 0.2962 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: -0.2050 S13: 0.0531 REMARK 3 S21: 0.0848 S22: 0.0258 S23: -0.1374 REMARK 3 S31: -0.0234 S32: 0.0856 S33: -0.0177 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 243 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): 71.6710 3.4020 61.6410 REMARK 3 T TENSOR REMARK 3 T11: 0.1124 T22: 0.0913 REMARK 3 T33: 0.2874 T12: -0.0140 REMARK 3 T13: 0.0546 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 8.6945 L22: 2.3828 REMARK 3 L33: 8.7048 L12: 0.2586 REMARK 3 L13: 2.7512 L23: 1.5388 REMARK 3 S TENSOR REMARK 3 S11: 0.1091 S12: -0.2819 S13: 0.6646 REMARK 3 S21: -0.1995 S22: -0.0162 S23: -0.5357 REMARK 3 S31: -0.2861 S32: 0.2439 S33: -0.0928 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4OMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34535 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.88300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M AMMONIUM SULFATE, 0.05 M BIS REMARK 280 -TRIS, 30% V/V PENTAERYTHRITOL ETHOXYLATE (15/4 EO/OH), REMARK 280 EQUILIBRATED AGAINST RESERVOIR OF 1.5 M NACL, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 53.24100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.24100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.24100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.24100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.24100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.24100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 53.24100 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 53.24100 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 53.24100 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 53.24100 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 53.24100 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 53.24100 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 53.24100 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 53.24100 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 53.24100 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 53.24100 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 53.24100 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 53.24100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: FULL TRIMER IS GENERATED BY CRYSTALLOGRAPHIC SYMMETRY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 106.48200 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -53.24100 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 53.24100 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 53.24100 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 53.24100 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 106.48200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 471 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 592 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 THR A 4 REMARK 465 ARG A 96 REMARK 465 ASP A 97 REMARK 465 PRO A 98 REMARK 465 ASN A 99 REMARK 465 SER A 100 REMARK 465 THR A 101 REMARK 465 ALA A 266 REMARK 465 LYS A 267 REMARK 465 ALA A 268 REMARK 465 SER A 269 REMARK 465 ALA A 270 REMARK 465 ALA A 271 REMARK 465 PRO A 272 REMARK 465 ARG A 273 REMARK 465 ARG A 274 REMARK 465 PRO A 275 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CD CE NZ REMARK 470 GLN A 56 CD OE1 NE2 REMARK 470 GLU A 87 CD OE1 OE2 REMARK 470 GLN A 106 CD OE1 NE2 REMARK 470 ARG A 244 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 264 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 46 CD GLU A 46 OE1 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 49 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 49 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 194 CB - CG - OD1 ANGL. DEV. = 8.6 DEGREES REMARK 500 ASP A 194 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 169 7.46 80.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEN A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JSB RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT LIGAND. REMARK 900 RELATED ID: 4JVT RELATED DB: PDB REMARK 900 SAME PROTEIN, WITH COA. REMARK 900 RELATED ID: NYSGRC-028034 RELATED DB: TARGETTRACK DBREF 4OMR A 1 275 UNP Q47NQ8 Q47NQ8_THEFY 1 275 SEQADV 4OMR MSE A -21 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR HIS A -20 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR HIS A -19 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR HIS A -18 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR HIS A -17 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR HIS A -16 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR HIS A -15 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR SER A -14 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR SER A -13 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR GLY A -12 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR VAL A -11 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR ASP A -10 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR LEU A -9 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR GLY A -8 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR THR A -7 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR GLU A -6 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR ASN A -5 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR LEU A -4 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR TYR A -3 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR PHE A -2 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR GLN A -1 UNP Q47NQ8 EXPRESSION TAG SEQADV 4OMR SER A 0 UNP Q47NQ8 EXPRESSION TAG SEQRES 1 A 297 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 297 GLY THR GLU ASN LEU TYR PHE GLN SER MSE ALA GLN THR SEQRES 3 A 297 LYS ALA PRO THR ALA GLU GLU LEU ALA ALA ALA GLY LEU SEQRES 4 A 297 THR LEU THR ILE ASP GLY GLU VAL ALA ARG ILE THR LEU SEQRES 5 A 297 SER ARG PRO HIS ARG ARG ASN ALA MSE THR GLY ARG MSE SEQRES 6 A 297 TRP THR GLU LEU ALA ARG ILE GLY HIS THR LEU PRO GLN SEQRES 7 A 297 ALA VAL ARG ILE VAL VAL ILE THR GLY GLU GLY PRO THR SEQRES 8 A 297 PHE SER SER GLY ILE ASP LEU ASP MSE PHE GLN ALA GLY SEQRES 9 A 297 LYS VAL ASP GLY GLU PRO THR PRO PHE THR LEU LEU ALA SEQRES 10 A 297 ARG ASP PRO ASN SER THR ALA ALA LEU ASP GLN VAL ILE SEQRES 11 A 297 ALA SER TYR GLN GLU GLY PHE LEU TRP LEU ARG ARG ALA SEQRES 12 A 297 ASP ILE VAL SER ILE ALA ALA VAL ARG GLY HIS ALA ILE SEQRES 13 A 297 GLY ALA GLY PHE GLN LEU ALA LEU SER CYS ASP ILE ARG SEQRES 14 A 297 ILE LEU SER ASP THR ALA GLN LEU CSD MSE LYS GLU PRO SEQRES 15 A 297 ALA LEU GLY LEU VAL PRO ASP LEU THR GLY THR GLN PRO SEQRES 16 A 297 LEU VAL GLU LEU VAL GLY VAL ASN ARG ALA ILE GLU LEU SEQRES 17 A 297 CYS LEU THR ALA ARG THR ILE ASP ALA ALA GLU ALA ALA SEQRES 18 A 297 GLN LEU ARG LEU ALA GLU ARG VAL VAL ALA ASP ALA GLU SEQRES 19 A 297 LEU ASP ALA ALA VAL ASP ALA LEU VAL ALA GLN LEU LEU SEQRES 20 A 297 ALA VAL PRO ALA ALA ALA ALA ARG ALA THR LYS GLU LEU SEQRES 21 A 297 LEU LEU GLN ALA GLY ARG ASN ASP LEU ALA THR GLN ALA SEQRES 22 A 297 ARG VAL GLU ARG THR ALA GLN LEU ALA ARG LEU ALA GLU SEQRES 23 A 297 LEU ALA LYS ALA SER ALA ALA PRO ARG ARG PRO MODRES 4OMR MSE A 39 MET SELENOMETHIONINE MODRES 4OMR MSE A 43 MET SELENOMETHIONINE MODRES 4OMR MSE A 78 MET SELENOMETHIONINE MODRES 4OMR CSD A 156 CYS 3-SULFINOALANINE MODRES 4OMR MSE A 157 MET SELENOMETHIONINE HET MSE A 39 8 HET MSE A 43 8 HET MSE A 78 8 HET CSD A 156 8 HET MSE A 157 8 HET CAA A 301 54 HET BEN A 302 9 HETNAM MSE SELENOMETHIONINE HETNAM CSD 3-SULFINOALANINE HETNAM CAA ACETOACETYL-COENZYME A HETNAM BEN BENZAMIDINE HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 CAA C25 H40 N7 O18 P3 S FORMUL 3 BEN C7 H8 N2 FORMUL 4 HOH *193(H2 O) HELIX 1 1 THR A 8 ALA A 15 1 8 HELIX 2 2 ARG A 32 ARG A 36 5 5 HELIX 3 3 THR A 40 LEU A 54 1 15 HELIX 4 4 ASP A 75 GLN A 80 5 6 HELIX 5 5 THR A 89 ALA A 95 1 7 HELIX 6 6 ALA A 102 TRP A 117 1 16 HELIX 7 7 LEU A 118 ARG A 119 5 2 HELIX 8 8 GLY A 135 CYS A 144 1 10 HELIX 9 9 LYS A 158 GLY A 163 5 6 HELIX 10 10 GLY A 170 GLY A 179 1 10 HELIX 11 11 GLY A 179 ALA A 190 1 12 HELIX 12 12 ALA A 195 LEU A 201 1 7 HELIX 13 13 ALA A 209 ALA A 211 5 3 HELIX 14 14 GLU A 212 VAL A 227 1 16 HELIX 15 15 PRO A 228 GLY A 243 1 16 HELIX 16 16 ASP A 246 LEU A 265 1 20 SHEET 1 A 6 LEU A 17 ASP A 22 0 SHEET 2 A 6 VAL A 25 LEU A 30 -1 O VAL A 25 N ASP A 22 SHEET 3 A 6 ILE A 60 GLY A 65 1 O VAL A 62 N ILE A 28 SHEET 4 A 6 VAL A 124 VAL A 129 1 O ILE A 126 N ILE A 63 SHEET 5 A 6 ILE A 146 SER A 150 1 O ILE A 146 N ALA A 127 SHEET 6 A 6 ARG A 206 VAL A 207 1 O ARG A 206 N LEU A 149 SHEET 1 B 3 HIS A 132 ILE A 134 0 SHEET 2 B 3 GLN A 154 CSD A 156 1 O GLN A 154 N ALA A 133 SHEET 3 B 3 ILE A 193 ASP A 194 -1 O ILE A 193 N LEU A 155 LINK C ALA A 38 N MSE A 39 1555 1555 1.33 LINK C MSE A 39 N THR A 40 1555 1555 1.32 LINK C ARG A 42 N MSE A 43 1555 1555 1.32 LINK C MSE A 43 N TRP A 44 1555 1555 1.34 LINK C ASP A 77 N MSE A 78 1555 1555 1.32 LINK C MSE A 78 N PHE A 79 1555 1555 1.33 LINK C LEU A 155 N CSD A 156 1555 1555 1.31 LINK C CSD A 156 N MSE A 157 1555 1555 1.32 LINK C MSE A 157 N LYS A 158 1555 1555 1.31 SITE 1 AC1 24 GLU A 10 HIS A 34 ARG A 35 ARG A 36 SITE 2 AC1 24 ALA A 38 SER A 72 ILE A 74 ASP A 75 SITE 3 AC1 24 LEU A 76 ILE A 134 GLY A 135 ALA A 136 SITE 4 AC1 24 LYS A 158 GLU A 159 LEU A 162 LEU A 164 SITE 5 AC1 24 BEN A 302 HOH A 444 HOH A 504 HOH A 529 SITE 6 AC1 24 HOH A 565 HOH A 567 HOH A 581 HOH A 583 SITE 1 AC2 5 ILE A 74 PRO A 90 ILE A 108 ASP A 167 SITE 2 AC2 5 CAA A 301 CRYST1 106.482 106.482 106.482 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009391 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009391 0.00000 MASTER 534 0 7 16 9 0 8 6 0 0 0 23 END