HEADER HYDROLASE/HYDROLASE INHIBITOR 21-JAN-14 4OK6 TITLE CRYSTAL STRUCTURE OF HEPATITIS C VIRUS NS3 HELICASE INHIBITOR CO- TITLE 2 COMPLEX WITH COMPOUND 13 [[1-(2-METHOXY-5-NITROBENZYL)-1H-INDOL-3- TITLE 3 YL]ACETIC ACID] COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE NS3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1206-1656; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_TAXID: 11103; SOURCE 4 GENE: NS3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HEPATITIS, ATPASE, NTPASE, NS3 HELICASE, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.K.PADYANA REVDAT 2 02-APR-14 4OK6 1 JRNL REVDAT 1 05-MAR-14 4OK6 0 JRNL AUTH S.R.LAPLANTE,A.K.PADYANA,A.ABEYWARDANE,P.BONNEAU,M.CARTIER, JRNL AUTH 2 R.COULOMBE,A.JAKALIAN,J.WILDESON-JONES,X.LI,S.LIANG, JRNL AUTH 3 G.MCKERCHER,P.WHITE,Q.ZHANG,S.J.TAYLOR JRNL TITL INTEGRATED STRATEGIES FOR IDENTIFYING LEADS THAT TARGET THE JRNL TITL 2 NS3 HELICASE OF THE HEPATITIS C VIRUS. JRNL REF J.MED.CHEM. V. 57 2074 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 24467709 JRNL DOI 10.1021/JM401432C REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 39931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.6724 - 5.7819 0.97 2848 140 0.1953 0.2351 REMARK 3 2 5.7819 - 4.5902 1.00 2781 145 0.1907 0.1920 REMARK 3 3 4.5902 - 4.0102 1.00 2731 167 0.1906 0.2638 REMARK 3 4 4.0102 - 3.6436 0.98 2682 156 0.2560 0.3372 REMARK 3 5 3.6436 - 3.3825 0.99 2687 158 0.2831 0.3165 REMARK 3 6 3.3825 - 3.1831 1.00 2729 137 0.2749 0.3662 REMARK 3 7 3.1831 - 3.0237 1.00 2708 137 0.2905 0.4069 REMARK 3 8 3.0237 - 2.8921 1.00 2704 134 0.2924 0.3641 REMARK 3 9 2.8921 - 2.7808 1.00 2705 141 0.2805 0.3690 REMARK 3 10 2.7808 - 2.6848 1.00 2688 145 0.2733 0.3833 REMARK 3 11 2.6848 - 2.6009 1.00 2714 134 0.2671 0.3471 REMARK 3 12 2.6009 - 2.5266 0.99 2664 140 0.2683 0.3613 REMARK 3 13 2.5266 - 2.4600 0.99 2667 131 0.2604 0.3464 REMARK 3 14 2.4600 - 2.4000 0.98 2618 140 0.2608 0.3521 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6569 REMARK 3 ANGLE : 1.365 8973 REMARK 3 CHIRALITY : 0.053 1041 REMARK 3 PLANARITY : 0.007 1152 REMARK 3 DIHEDRAL : 16.179 2334 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-14. REMARK 100 THE RCSB ID CODE IS RCSB084595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40031 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 64.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.850 REMARK 200 R MERGE (I) : 0.14900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.38 REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.07300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.36200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.66050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.36200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.07300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.66050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 167 REMARK 465 GLY A 168 REMARK 465 SER A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 SER A 177 REMARK 465 SER A 178 REMARK 465 GLY A 179 REMARK 465 ARG A 180 REMARK 465 SER A 181 REMARK 465 PRO A 182 REMARK 465 VAL A 183 REMARK 465 PHE A 184 REMARK 465 VAL A 382 REMARK 465 ALA A 383 REMARK 465 LEU A 384 REMARK 465 GLY A 385 REMARK 465 ILE A 400 REMARK 465 PRO A 401 REMARK 465 THR A 402 REMARK 465 ASN A 403 REMARK 465 GLY A 404 REMARK 465 THR A 416 REMARK 465 GLY A 417 REMARK 465 PHE A 418 REMARK 465 THR A 419 REMARK 465 GLY A 420 REMARK 465 ASP A 421 REMARK 465 VAL A 630 REMARK 465 MET B 167 REMARK 465 GLY B 168 REMARK 465 SER B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 HIS B 172 REMARK 465 HIS B 173 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 465 HIS B 176 REMARK 465 SER B 177 REMARK 465 SER B 178 REMARK 465 GLY B 179 REMARK 465 ARG B 180 REMARK 465 SER B 181 REMARK 465 PRO B 182 REMARK 465 VAL B 183 REMARK 465 PHE B 184 REMARK 465 THR B 185 REMARK 465 ASP B 186 REMARK 465 GLY B 207 REMARK 465 SER B 208 REMARK 465 GLY B 209 REMARK 465 LYS B 210 REMARK 465 SER B 211 REMARK 465 GLY B 247 REMARK 465 VAL B 248 REMARK 465 ASP B 249 REMARK 465 PRO B 250 REMARK 465 ASN B 251 REMARK 465 ILE B 252 REMARK 465 ARG B 253 REMARK 465 THR B 254 REMARK 465 GLY B 255 REMARK 465 VAL B 256 REMARK 465 ARG B 257 REMARK 465 THR B 258 REMARK 465 ILE B 259 REMARK 465 THR B 260 REMARK 465 THR B 261 REMARK 465 GLY B 262 REMARK 465 MET B 415 REMARK 465 THR B 416 REMARK 465 GLY B 417 REMARK 465 PHE B 418 REMARK 465 THR B 419 REMARK 465 GLU B 628 REMARK 465 VAL B 629 REMARK 465 VAL B 630 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 363 O ILE B 400 2.05 REMARK 500 NH2 ARG A 587 O HOH A 1138 2.14 REMARK 500 O LEU A 560 OH TYR A 600 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 600 CD1 TYR A 600 CE1 -0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 392 N - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 LEU B 588 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 190 103.67 -54.01 REMARK 500 PRO A 205 155.23 -49.83 REMARK 500 SER A 208 40.64 -65.93 REMARK 500 THR A 212 -59.86 -125.38 REMARK 500 HIS A 246 -20.09 -169.02 REMARK 500 PHE A 349 -99.02 -91.48 REMARK 500 LEU A 356 -71.69 4.78 REMARK 500 GLU A 357 -49.12 -27.29 REMARK 500 TYR A 392 162.29 170.90 REMARK 500 ASP A 396 -97.61 -87.10 REMARK 500 SER A 398 59.73 -146.87 REMARK 500 THR A 411 -167.83 -75.96 REMARK 500 ASN A 429 18.65 58.63 REMARK 500 THR A 443 -86.91 -128.02 REMARK 500 ARG A 464 21.16 -79.58 REMARK 500 ASP A 579 151.79 -42.62 REMARK 500 ARG A 587 39.67 149.43 REMARK 500 THR A 591 44.91 -87.88 REMARK 500 TYR A 600 167.06 173.60 REMARK 500 GLU A 628 -167.42 -78.30 REMARK 500 LYS B 352 -166.97 -116.92 REMARK 500 ASP B 396 -74.64 -134.66 REMARK 500 ASN B 403 13.06 -50.18 REMARK 500 THR B 443 -83.08 -127.54 REMARK 500 THR B 591 49.99 -86.41 REMARK 500 TYR B 600 165.69 178.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 245 HIS A 246 -146.20 REMARK 500 ARG A 393 GLY A 394 -136.85 REMARK 500 ARG B 587 LEU B 588 -146.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 807 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B 845 DISTANCE = 6.66 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 718 O REMARK 620 2 ASP B 437 OD1 73.6 REMARK 620 3 GLU A 447 OE2 82.3 137.5 REMARK 620 4 ASP A 437 OD2 84.9 114.3 97.4 REMARK 620 5 HOH A1142 O 123.4 92.9 71.7 146.3 REMARK 620 6 ASP B 437 OD2 88.6 43.6 169.0 75.4 118.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 437 OD2 REMARK 620 2 HOH B 791 O 95.6 REMARK 620 3 HOH A1133 O 84.8 160.8 REMARK 620 4 ASP A 437 OD2 89.7 90.8 70.0 REMARK 620 5 ASP A 437 OD1 126.2 64.0 100.4 45.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2T7 A 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OJQ RELATED DB: PDB REMARK 900 RELATED ID: 4OK3 RELATED DB: PDB REMARK 900 RELATED ID: 4OK5 RELATED DB: PDB REMARK 900 RELATED ID: 4OKS RELATED DB: PDB DBREF 4OK6 A 180 630 UNP K4KA16 K4KA16_9HEPC 1206 1656 DBREF 4OK6 B 180 630 UNP K4KA16 K4KA16_9HEPC 1206 1656 SEQADV 4OK6 MET A 167 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 GLY A 168 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 SER A 169 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 SER A 170 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 HIS A 171 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 HIS A 172 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 HIS A 173 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 HIS A 174 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 HIS A 175 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 HIS A 176 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 SER A 177 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 SER A 178 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 GLY A 179 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 ASN A 403 UNP K4KA16 SER 1429 CONFLICT SEQADV 4OK6 MET A 505 UNP K4KA16 THR 1531 CONFLICT SEQADV 4OK6 MET B 167 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 GLY B 168 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 SER B 169 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 SER B 170 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 HIS B 171 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 HIS B 172 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 HIS B 173 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 HIS B 174 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 HIS B 175 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 HIS B 176 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 SER B 177 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 SER B 178 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 GLY B 179 UNP K4KA16 EXPRESSION TAG SEQADV 4OK6 ASN B 403 UNP K4KA16 SER 1429 CONFLICT SEQADV 4OK6 MET B 505 UNP K4KA16 THR 1531 CONFLICT SEQRES 1 A 464 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 464 ARG SER PRO VAL PHE THR ASP ASN SER SER PRO PRO ALA SEQRES 3 A 464 VAL PRO GLN SER PHE GLN VAL ALA HIS LEU HIS ALA PRO SEQRES 4 A 464 THR GLY SER GLY LYS SER THR LYS VAL PRO ALA ALA TYR SEQRES 5 A 464 ALA ALA GLN GLY TYR LYS VAL LEU VAL LEU ASN PRO SER SEQRES 6 A 464 VAL ALA ALA THR LEU GLY PHE GLY ALA TYR MET SER LYS SEQRES 7 A 464 ALA HIS GLY VAL ASP PRO ASN ILE ARG THR GLY VAL ARG SEQRES 8 A 464 THR ILE THR THR GLY SER PRO ILE THR TYR SER THR TYR SEQRES 9 A 464 GLY LYS PHE LEU ALA ASP GLY GLY CYS SER GLY GLY ALA SEQRES 10 A 464 TYR ASP ILE ILE ILE CYS ASP GLU CYS HIS SER THR ASP SEQRES 11 A 464 ALA THR SER ILE LEU GLY ILE GLY THR VAL LEU ASP GLN SEQRES 12 A 464 ALA GLU THR ALA GLY ALA ARG LEU VAL VAL LEU ALA THR SEQRES 13 A 464 ALA THR PRO PRO GLY SER VAL THR VAL SER HIS PRO ASN SEQRES 14 A 464 ILE GLU GLU VAL ALA LEU SER THR THR GLY GLU ILE PRO SEQRES 15 A 464 PHE TYR GLY LYS ALA ILE PRO LEU GLU VAL ILE LYS GLY SEQRES 16 A 464 GLY ARG HIS LEU ILE PHE CYS HIS SER LYS LYS LYS CYS SEQRES 17 A 464 ASP GLU LEU ALA ALA LYS LEU VAL ALA LEU GLY ILE ASN SEQRES 18 A 464 ALA VAL ALA TYR TYR ARG GLY LEU ASP VAL SER VAL ILE SEQRES 19 A 464 PRO THR ASN GLY ASP VAL VAL VAL VAL SER THR ASP ALA SEQRES 20 A 464 LEU MET THR GLY PHE THR GLY ASP PHE ASP SER VAL ILE SEQRES 21 A 464 ASP CYS ASN THR CYS VAL THR GLN THR VAL ASP PHE SER SEQRES 22 A 464 LEU ASP PRO THR PHE THR ILE GLU THR THR THR LEU PRO SEQRES 23 A 464 GLN ASP ALA VAL SER ARG THR GLN ARG ARG GLY ARG THR SEQRES 24 A 464 GLY ARG GLY LYS PRO GLY ILE TYR ARG PHE VAL ALA PRO SEQRES 25 A 464 GLY GLU ARG PRO SER GLY MET PHE ASP SER SER VAL LEU SEQRES 26 A 464 CYS GLU CYS TYR ASP ALA GLY CYS ALA TRP TYR GLU LEU SEQRES 27 A 464 MET PRO ALA GLU THR THR VAL ARG LEU ARG ALA TYR MET SEQRES 28 A 464 ASN THR PRO GLY LEU PRO VAL CYS GLN ASP HIS LEU GLU SEQRES 29 A 464 PHE TRP GLU GLY VAL PHE THR GLY LEU THR HIS ILE ASP SEQRES 30 A 464 ALA HIS PHE LEU SER GLN THR LYS GLN SER GLY GLU ASN SEQRES 31 A 464 PHE PRO TYR LEU VAL ALA TYR GLN ALA THR VAL CYS ALA SEQRES 32 A 464 ARG ALA GLN ALA PRO PRO PRO SER TRP ASP GLN MET TRP SEQRES 33 A 464 LYS CYS LEU ILE ARG LEU LYS PRO THR LEU HIS GLY PRO SEQRES 34 A 464 THR PRO LEU LEU TYR ARG LEU GLY ALA VAL GLN ASN GLU SEQRES 35 A 464 VAL THR LEU THR HIS PRO ILE THR LYS TYR ILE MET THR SEQRES 36 A 464 CYS MET SER ALA ASP LEU GLU VAL VAL SEQRES 1 B 464 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 464 ARG SER PRO VAL PHE THR ASP ASN SER SER PRO PRO ALA SEQRES 3 B 464 VAL PRO GLN SER PHE GLN VAL ALA HIS LEU HIS ALA PRO SEQRES 4 B 464 THR GLY SER GLY LYS SER THR LYS VAL PRO ALA ALA TYR SEQRES 5 B 464 ALA ALA GLN GLY TYR LYS VAL LEU VAL LEU ASN PRO SER SEQRES 6 B 464 VAL ALA ALA THR LEU GLY PHE GLY ALA TYR MET SER LYS SEQRES 7 B 464 ALA HIS GLY VAL ASP PRO ASN ILE ARG THR GLY VAL ARG SEQRES 8 B 464 THR ILE THR THR GLY SER PRO ILE THR TYR SER THR TYR SEQRES 9 B 464 GLY LYS PHE LEU ALA ASP GLY GLY CYS SER GLY GLY ALA SEQRES 10 B 464 TYR ASP ILE ILE ILE CYS ASP GLU CYS HIS SER THR ASP SEQRES 11 B 464 ALA THR SER ILE LEU GLY ILE GLY THR VAL LEU ASP GLN SEQRES 12 B 464 ALA GLU THR ALA GLY ALA ARG LEU VAL VAL LEU ALA THR SEQRES 13 B 464 ALA THR PRO PRO GLY SER VAL THR VAL SER HIS PRO ASN SEQRES 14 B 464 ILE GLU GLU VAL ALA LEU SER THR THR GLY GLU ILE PRO SEQRES 15 B 464 PHE TYR GLY LYS ALA ILE PRO LEU GLU VAL ILE LYS GLY SEQRES 16 B 464 GLY ARG HIS LEU ILE PHE CYS HIS SER LYS LYS LYS CYS SEQRES 17 B 464 ASP GLU LEU ALA ALA LYS LEU VAL ALA LEU GLY ILE ASN SEQRES 18 B 464 ALA VAL ALA TYR TYR ARG GLY LEU ASP VAL SER VAL ILE SEQRES 19 B 464 PRO THR ASN GLY ASP VAL VAL VAL VAL SER THR ASP ALA SEQRES 20 B 464 LEU MET THR GLY PHE THR GLY ASP PHE ASP SER VAL ILE SEQRES 21 B 464 ASP CYS ASN THR CYS VAL THR GLN THR VAL ASP PHE SER SEQRES 22 B 464 LEU ASP PRO THR PHE THR ILE GLU THR THR THR LEU PRO SEQRES 23 B 464 GLN ASP ALA VAL SER ARG THR GLN ARG ARG GLY ARG THR SEQRES 24 B 464 GLY ARG GLY LYS PRO GLY ILE TYR ARG PHE VAL ALA PRO SEQRES 25 B 464 GLY GLU ARG PRO SER GLY MET PHE ASP SER SER VAL LEU SEQRES 26 B 464 CYS GLU CYS TYR ASP ALA GLY CYS ALA TRP TYR GLU LEU SEQRES 27 B 464 MET PRO ALA GLU THR THR VAL ARG LEU ARG ALA TYR MET SEQRES 28 B 464 ASN THR PRO GLY LEU PRO VAL CYS GLN ASP HIS LEU GLU SEQRES 29 B 464 PHE TRP GLU GLY VAL PHE THR GLY LEU THR HIS ILE ASP SEQRES 30 B 464 ALA HIS PHE LEU SER GLN THR LYS GLN SER GLY GLU ASN SEQRES 31 B 464 PHE PRO TYR LEU VAL ALA TYR GLN ALA THR VAL CYS ALA SEQRES 32 B 464 ARG ALA GLN ALA PRO PRO PRO SER TRP ASP GLN MET TRP SEQRES 33 B 464 LYS CYS LEU ILE ARG LEU LYS PRO THR LEU HIS GLY PRO SEQRES 34 B 464 THR PRO LEU LEU TYR ARG LEU GLY ALA VAL GLN ASN GLU SEQRES 35 B 464 VAL THR LEU THR HIS PRO ILE THR LYS TYR ILE MET THR SEQRES 36 B 464 CYS MET SER ALA ASP LEU GLU VAL VAL HET CA A1001 1 HET CA A1002 1 HET 2T7 A1003 25 HETNAM CA CALCIUM ION HETNAM 2T7 [1-(2-METHOXY-5-NITROBENZYL)-1H-INDOL-3-YL]ACETIC ACID FORMUL 3 CA 2(CA 2+) FORMUL 5 2T7 C18 H16 N2 O5 FORMUL 6 HOH *332(H2 O) HELIX 1 1 THR A 212 GLN A 221 1 10 HELIX 2 2 SER A 231 GLY A 247 1 17 HELIX 3 3 TYR A 270 ASP A 276 1 7 HELIX 4 4 ASP A 296 ALA A 310 1 15 HELIX 5 5 PRO A 355 LYS A 360 5 6 HELIX 6 6 SER A 370 LEU A 381 1 12 HELIX 7 7 ASP A 454 ARG A 464 1 11 HELIX 8 8 ASP A 487 TYR A 502 1 16 HELIX 9 9 MET A 505 ASN A 518 1 14 HELIX 10 10 HIS A 528 GLY A 538 1 11 HELIX 11 11 ASP A 543 GLY A 554 1 12 HELIX 12 12 PHE A 557 ALA A 571 1 15 HELIX 13 13 ASP A 579 ILE A 586 5 8 HELIX 14 14 HIS A 613 LEU A 627 1 15 HELIX 15 15 LYS B 213 ALA B 220 1 8 HELIX 16 16 TYR B 270 ASP B 276 1 7 HELIX 17 17 ASP B 296 ALA B 310 1 15 HELIX 18 18 PRO B 355 ILE B 359 5 5 HELIX 19 19 SER B 370 ALA B 383 1 14 HELIX 20 20 ASP B 454 GLY B 463 1 10 HELIX 21 21 ASP B 487 TRP B 501 1 15 HELIX 22 22 MET B 505 THR B 519 1 15 HELIX 23 23 HIS B 528 LEU B 539 1 12 HELIX 24 24 ASP B 543 GLY B 554 1 12 HELIX 25 25 PHE B 557 ALA B 571 1 15 HELIX 26 26 ASP B 579 ILE B 586 5 8 HELIX 27 27 HIS B 613 LEU B 627 1 15 SHEET 1 A 8 ASP A 186 ASN A 187 0 SHEET 2 A 8 GLN A 198 HIS A 203 1 O HIS A 203 N ASN A 187 SHEET 3 A 8 LEU A 317 THR A 322 1 O LEU A 320 N ALA A 200 SHEET 4 A 8 ILE A 286 ASP A 290 1 N ILE A 287 O LEU A 317 SHEET 5 A 8 VAL A 225 ASN A 229 1 N LEU A 226 O ILE A 288 SHEET 6 A 8 ILE A 265 THR A 269 1 O THR A 266 N VAL A 225 SHEET 7 A 8 ASN A 251 ARG A 253 1 N ARG A 253 O TYR A 267 SHEET 8 A 8 THR A 258 ILE A 259 -1 O ILE A 259 N ILE A 252 SHEET 1 B 6 ILE A 336 GLU A 338 0 SHEET 2 B 6 GLY A 471 PHE A 475 1 O TYR A 473 N GLU A 337 SHEET 3 B 6 SER A 424 ASP A 427 1 N VAL A 425 O ILE A 472 SHEET 4 B 6 ARG A 363 PHE A 367 1 N PHE A 367 O ILE A 426 SHEET 5 B 6 VAL A 406 SER A 410 1 O VAL A 408 N HIS A 364 SHEET 6 B 6 VAL A 389 TYR A 391 1 N VAL A 389 O VAL A 409 SHEET 1 C 2 THR A 430 ASP A 437 0 SHEET 2 C 2 THR A 445 PRO A 452 -1 O THR A 449 N THR A 433 SHEET 1 D 2 THR A 596 PRO A 597 0 SHEET 2 D 2 VAL A 609 THR A 610 1 O THR A 610 N THR A 596 SHEET 1 E 5 GLN B 198 HIS B 203 0 SHEET 2 E 5 LEU B 317 THR B 322 1 O VAL B 318 N ALA B 200 SHEET 3 E 5 ILE B 286 CYS B 289 1 N ILE B 287 O VAL B 319 SHEET 4 E 5 VAL B 225 ASN B 229 1 N LEU B 226 O ILE B 286 SHEET 5 E 5 ILE B 265 THR B 269 1 O THR B 266 N VAL B 227 SHEET 1 F 6 ILE B 336 ALA B 340 0 SHEET 2 F 6 GLY B 471 PHE B 475 1 O TYR B 473 N GLU B 337 SHEET 3 F 6 SER B 424 ASP B 427 1 N VAL B 425 O ARG B 474 SHEET 4 F 6 ARG B 363 PHE B 367 1 N LEU B 365 O ILE B 426 SHEET 5 F 6 VAL B 406 SER B 410 1 O VAL B 408 N ILE B 366 SHEET 6 F 6 ALA B 388 TYR B 391 1 N VAL B 389 O VAL B 409 SHEET 1 G 2 ILE B 347 PHE B 349 0 SHEET 2 G 2 LYS B 352 ILE B 354 -1 O LYS B 352 N PHE B 349 SHEET 1 H 2 THR B 430 ASP B 437 0 SHEET 2 H 2 THR B 445 PRO B 452 -1 O THR B 445 N ASP B 437 SHEET 1 I 2 THR B 596 PRO B 597 0 SHEET 2 I 2 VAL B 609 THR B 610 1 O THR B 610 N THR B 596 LINK CA CA A1002 O HOH B 718 1555 1555 2.40 LINK OD2 ASP B 437 CA CA A1001 1555 1555 2.44 LINK CA CA A1001 O HOH B 791 1555 1555 2.48 LINK OD1 ASP B 437 CA CA A1002 1555 1555 2.56 LINK OE2 GLU A 447 CA CA A1002 1555 1555 2.60 LINK CA CA A1001 O HOH A1133 1555 1555 2.63 LINK OD2 ASP A 437 CA CA A1001 1555 1555 2.69 LINK OD2 ASP A 437 CA CA A1002 1555 1555 2.74 LINK CA CA A1002 O HOH A1142 1555 1555 2.91 LINK OD1 ASP A 437 CA CA A1001 1555 1555 2.94 LINK OD2 ASP B 437 CA CA A1002 1555 1555 3.15 CISPEP 1 LYS A 360 GLY A 361 0 -2.38 CISPEP 2 ASP A 441 PRO A 442 0 4.21 CISPEP 3 ASP B 441 PRO B 442 0 9.41 SITE 1 AC1 4 ASP A 437 HOH A1133 ASP B 437 HOH B 791 SITE 1 AC2 5 ASP A 437 GLU A 447 HOH A1142 ASP B 437 SITE 2 AC2 5 HOH B 718 SITE 1 AC3 11 VAL A 232 THR A 254 GLY A 255 THR A 269 SITE 2 AC3 11 GLY A 271 LYS A 272 ALA A 275 THR A 298 SITE 3 AC3 11 ALA A 497 TRP A 501 TYR A 502 CRYST1 82.146 103.321 118.724 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012174 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009679 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008423 0.00000 MASTER 461 0 3 27 35 0 6 6 0 0 0 72 END