HEADER TRANSFERASE/TRANSFERASE INHIBITOR 26-DEC-13 4O7U TITLE ETHEROCOMPLEX OF ENTEROCCOCUS FAECALIS THYMIDYLATE SYNTHASE WITH 5- TITLE 2 HYDROXYMETHILENE-6-HYDROFOLIC ACID AND THE PHTALIMIDIC INHIBITOR SS7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TS, TSASE; COMPND 5 EC: 2.1.1.45; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 226185; SOURCE 4 STRAIN: ATCC 700802 / V583; SOURCE 5 GENE: THYA, EF_1576; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, FOLATE BINDING, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.MANGANI,C.POZZI REVDAT 2 05-OCT-16 4O7U 1 JRNL REVDAT 1 31-DEC-14 4O7U 0 JRNL AUTH A.CATALANO,R.LUCIANI,A.CAROCCI,D.CORTESI,C.POZZI,C.BORSARI, JRNL AUTH 2 S.FERRARI,S.MANGANI JRNL TITL X-RAY CRYSTAL STRUCTURES OF ENTEROCOCCUS FAECALIS JRNL TITL 2 THYMIDYLATE SYNTHASE WITH FOLATE BINDING SITE INHIBITORS. JRNL REF EUR.J.MED.CHEM. V. 123 649 2016 JRNL REFN ISSN 0223-5234 JRNL PMID 27517810 JRNL DOI 10.1016/J.EJMECH.2016.07.066 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 76.1 REMARK 3 NUMBER OF REFLECTIONS : 36573 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1962 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2673 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9738 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.402 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.241 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.366 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.830 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10096 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13685 ; 1.301 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1185 ; 6.147 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 522 ;35.367 ;24.291 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1669 ;16.855 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;15.160 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1425 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7844 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4764 ; 0.610 ; 1.491 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5941 ; 1.080 ; 2.230 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 5332 ; 0.573 ; 1.559 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-14. REMARK 100 THE RCSB ID CODE IS RCSB084151. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.936 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38554 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 67.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 76.5 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.35400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6.5 MG/ML EFTS, 3.2 M AMMONIUM REMARK 280 SULFATE, 0.1 M HEPES, CO-CYSTALLIZATION WITH 4 MM SS7 IN DMSO IN REMARK 280 1/10 SS7/EFTS VOLUME RATIO, PH 7.0, MICROBATCH UNDER OIL, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.11250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 96 REMARK 465 GLY A 97 REMARK 465 PRO A 98 REMARK 465 ASP A 99 REMARK 465 MET A 100 REMARK 465 THR A 101 REMARK 465 ASP A 102 REMARK 465 PHE A 103 REMARK 465 GLY A 104 REMARK 465 HIS A 105 REMARK 465 ARG A 106 REMARK 465 VAL A 107 REMARK 465 LEU A 108 REMARK 465 GLN A 109 REMARK 465 ASP A 110 REMARK 465 PRO A 111 REMARK 465 ALA A 112 REMARK 465 PHE A 113 REMARK 465 ALA A 114 REMARK 465 GLU A 115 REMARK 465 ASP A 286 REMARK 465 LYS A 287 REMARK 465 ALA A 288 REMARK 465 ALA A 314 REMARK 465 VAL A 315 REMARK 465 SER C 92 REMARK 465 ALA C 93 REMARK 465 ASP C 94 REMARK 465 TYR C 95 REMARK 465 GLN C 96 REMARK 465 GLY C 97 REMARK 465 PRO C 98 REMARK 465 ASP C 99 REMARK 465 MET C 100 REMARK 465 THR C 101 REMARK 465 ASP C 102 REMARK 465 PHE C 103 REMARK 465 GLY C 104 REMARK 465 HIS C 105 REMARK 465 ARG C 106 REMARK 465 VAL C 107 REMARK 465 LEU C 108 REMARK 465 GLN C 109 REMARK 465 ASP C 110 REMARK 465 PRO C 111 REMARK 465 ALA C 112 REMARK 465 PHE C 113 REMARK 465 ALA C 114 REMARK 465 GLU C 115 REMARK 465 GLN C 116 REMARK 465 TYR C 117 REMARK 465 LYS C 118 REMARK 465 GLU C 119 REMARK 465 GLU C 120 REMARK 465 HIS C 121 REMARK 465 GLN C 122 REMARK 465 LYS C 123 REMARK 465 PHE C 124 REMARK 465 CYS C 125 REMARK 465 ASP C 126 REMARK 465 ALA C 127 REMARK 465 ILE C 128 REMARK 465 LEU C 129 REMARK 465 ASN C 130 REMARK 465 ASP C 131 REMARK 465 ALA C 132 REMARK 465 ALA C 314 REMARK 465 VAL C 315 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 133 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 118 79.35 -112.78 REMARK 500 ALA A 132 -78.28 -68.41 REMARK 500 HIS A 151 57.66 -157.41 REMARK 500 ASP A 294 -166.84 -114.30 REMARK 500 HIS B 151 39.17 -154.07 REMARK 500 SER B 158 -160.13 -125.11 REMARK 500 ASN C 143 75.56 -115.36 REMARK 500 HIS C 151 63.05 -153.17 REMARK 500 ASN C 173 64.20 -152.16 REMARK 500 TYR C 303 97.63 -68.37 REMARK 500 ASP C 304 78.50 -119.45 REMARK 500 THR C 308 131.22 -37.94 REMARK 500 ILE D 144 -161.28 -77.51 REMARK 500 HIS D 151 51.08 -158.52 REMARK 500 ASN D 173 63.48 -151.69 REMARK 500 GLU D 207 56.46 28.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THF B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SS7 D 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UWL RELATED DB: PDB DBREF 4O7U A 1 315 UNP Q834R3 TYSY_ENTFA 1 315 DBREF 4O7U B 1 315 UNP Q834R3 TYSY_ENTFA 1 315 DBREF 4O7U C 1 315 UNP Q834R3 TYSY_ENTFA 1 315 DBREF 4O7U D 1 315 UNP Q834R3 TYSY_ENTFA 1 315 SEQRES 1 A 315 MET GLU GLU ALA TYR LEU ALA LEU GLY LYS LYS ILE LEU SEQRES 2 A 315 GLU GLU GLY HIS PHE LYS GLU ASP ARG THR GLY THR GLY SEQRES 3 A 315 THR TYR SER LEU PHE GLY TYR GLN MET ARG PHE ASP LEU SEQRES 4 A 315 ALA LYS GLY PHE PRO LEU LEU THR THR LYS ARG VAL PRO SEQRES 5 A 315 PHE GLY LEU ILE LYS SER GLU LEU LEU TRP PHE LEU LYS SEQRES 6 A 315 GLY ASP THR ASN ILE ARG TYR LEU LEU GLU ARG ASN ASN SEQRES 7 A 315 HIS ILE TRP ASP GLU TRP ALA PHE GLU ARG TYR VAL LYS SEQRES 8 A 315 SER ALA ASP TYR GLN GLY PRO ASP MET THR ASP PHE GLY SEQRES 9 A 315 HIS ARG VAL LEU GLN ASP PRO ALA PHE ALA GLU GLN TYR SEQRES 10 A 315 LYS GLU GLU HIS GLN LYS PHE CYS ASP ALA ILE LEU ASN SEQRES 11 A 315 ASP ALA GLU PHE ALA GLU LYS TYR GLY GLU LEU GLY ASN SEQRES 12 A 315 ILE TYR GLY ALA GLN TRP ARG HIS TRP GLU THR LYS ASP SEQRES 13 A 315 GLY SER PHE ILE ASP GLN LEU ALA ASN VAL ILE GLU MET SEQRES 14 A 315 ILE LYS THR ASN PRO ASP SER ARG ARG LEU ILE VAL SER SEQRES 15 A 315 ALA TRP ASN PRO GLU ASP VAL PRO SER MET ALA LEU PRO SEQRES 16 A 315 PRO CYS HIS THR MET PHE GLN PHE TYR VAL ASN GLU GLY SEQRES 17 A 315 LYS LEU SER CYS GLN LEU TYR GLN ARG SER ALA ASP VAL SEQRES 18 A 315 PHE LEU GLY VAL PRO PHE ASN ILE ALA SER TYR ALA LEU SEQRES 19 A 315 LEU THR HIS LEU ILE ALA HIS GLU THR GLY LEU GLU VAL SEQRES 20 A 315 GLY GLU PHE VAL HIS THR LEU GLY ASP ALA HIS LEU TYR SEQRES 21 A 315 GLN ASN HIS VAL GLU GLN MET GLN GLU GLN LEU SER ARG SEQRES 22 A 315 GLU VAL ARG SER PHE PRO THR LEU VAL LEU ASN PRO ASP SEQRES 23 A 315 LYS ALA SER VAL PHE ASP PHE ASP MET GLU ASP ILE LYS SEQRES 24 A 315 VAL GLU GLY TYR ASP PRO HIS PRO THR ILE LYS ALA PRO SEQRES 25 A 315 ILE ALA VAL SEQRES 1 B 315 MET GLU GLU ALA TYR LEU ALA LEU GLY LYS LYS ILE LEU SEQRES 2 B 315 GLU GLU GLY HIS PHE LYS GLU ASP ARG THR GLY THR GLY SEQRES 3 B 315 THR TYR SER LEU PHE GLY TYR GLN MET ARG PHE ASP LEU SEQRES 4 B 315 ALA LYS GLY PHE PRO LEU LEU THR THR LYS ARG VAL PRO SEQRES 5 B 315 PHE GLY LEU ILE LYS SER GLU LEU LEU TRP PHE LEU LYS SEQRES 6 B 315 GLY ASP THR ASN ILE ARG TYR LEU LEU GLU ARG ASN ASN SEQRES 7 B 315 HIS ILE TRP ASP GLU TRP ALA PHE GLU ARG TYR VAL LYS SEQRES 8 B 315 SER ALA ASP TYR GLN GLY PRO ASP MET THR ASP PHE GLY SEQRES 9 B 315 HIS ARG VAL LEU GLN ASP PRO ALA PHE ALA GLU GLN TYR SEQRES 10 B 315 LYS GLU GLU HIS GLN LYS PHE CYS ASP ALA ILE LEU ASN SEQRES 11 B 315 ASP ALA GLU PHE ALA GLU LYS TYR GLY GLU LEU GLY ASN SEQRES 12 B 315 ILE TYR GLY ALA GLN TRP ARG HIS TRP GLU THR LYS ASP SEQRES 13 B 315 GLY SER PHE ILE ASP GLN LEU ALA ASN VAL ILE GLU MET SEQRES 14 B 315 ILE LYS THR ASN PRO ASP SER ARG ARG LEU ILE VAL SER SEQRES 15 B 315 ALA TRP ASN PRO GLU ASP VAL PRO SER MET ALA LEU PRO SEQRES 16 B 315 PRO CYS HIS THR MET PHE GLN PHE TYR VAL ASN GLU GLY SEQRES 17 B 315 LYS LEU SER CYS GLN LEU TYR GLN ARG SER ALA ASP VAL SEQRES 18 B 315 PHE LEU GLY VAL PRO PHE ASN ILE ALA SER TYR ALA LEU SEQRES 19 B 315 LEU THR HIS LEU ILE ALA HIS GLU THR GLY LEU GLU VAL SEQRES 20 B 315 GLY GLU PHE VAL HIS THR LEU GLY ASP ALA HIS LEU TYR SEQRES 21 B 315 GLN ASN HIS VAL GLU GLN MET GLN GLU GLN LEU SER ARG SEQRES 22 B 315 GLU VAL ARG SER PHE PRO THR LEU VAL LEU ASN PRO ASP SEQRES 23 B 315 LYS ALA SER VAL PHE ASP PHE ASP MET GLU ASP ILE LYS SEQRES 24 B 315 VAL GLU GLY TYR ASP PRO HIS PRO THR ILE LYS ALA PRO SEQRES 25 B 315 ILE ALA VAL SEQRES 1 C 315 MET GLU GLU ALA TYR LEU ALA LEU GLY LYS LYS ILE LEU SEQRES 2 C 315 GLU GLU GLY HIS PHE LYS GLU ASP ARG THR GLY THR GLY SEQRES 3 C 315 THR TYR SER LEU PHE GLY TYR GLN MET ARG PHE ASP LEU SEQRES 4 C 315 ALA LYS GLY PHE PRO LEU LEU THR THR LYS ARG VAL PRO SEQRES 5 C 315 PHE GLY LEU ILE LYS SER GLU LEU LEU TRP PHE LEU LYS SEQRES 6 C 315 GLY ASP THR ASN ILE ARG TYR LEU LEU GLU ARG ASN ASN SEQRES 7 C 315 HIS ILE TRP ASP GLU TRP ALA PHE GLU ARG TYR VAL LYS SEQRES 8 C 315 SER ALA ASP TYR GLN GLY PRO ASP MET THR ASP PHE GLY SEQRES 9 C 315 HIS ARG VAL LEU GLN ASP PRO ALA PHE ALA GLU GLN TYR SEQRES 10 C 315 LYS GLU GLU HIS GLN LYS PHE CYS ASP ALA ILE LEU ASN SEQRES 11 C 315 ASP ALA GLU PHE ALA GLU LYS TYR GLY GLU LEU GLY ASN SEQRES 12 C 315 ILE TYR GLY ALA GLN TRP ARG HIS TRP GLU THR LYS ASP SEQRES 13 C 315 GLY SER PHE ILE ASP GLN LEU ALA ASN VAL ILE GLU MET SEQRES 14 C 315 ILE LYS THR ASN PRO ASP SER ARG ARG LEU ILE VAL SER SEQRES 15 C 315 ALA TRP ASN PRO GLU ASP VAL PRO SER MET ALA LEU PRO SEQRES 16 C 315 PRO CYS HIS THR MET PHE GLN PHE TYR VAL ASN GLU GLY SEQRES 17 C 315 LYS LEU SER CYS GLN LEU TYR GLN ARG SER ALA ASP VAL SEQRES 18 C 315 PHE LEU GLY VAL PRO PHE ASN ILE ALA SER TYR ALA LEU SEQRES 19 C 315 LEU THR HIS LEU ILE ALA HIS GLU THR GLY LEU GLU VAL SEQRES 20 C 315 GLY GLU PHE VAL HIS THR LEU GLY ASP ALA HIS LEU TYR SEQRES 21 C 315 GLN ASN HIS VAL GLU GLN MET GLN GLU GLN LEU SER ARG SEQRES 22 C 315 GLU VAL ARG SER PHE PRO THR LEU VAL LEU ASN PRO ASP SEQRES 23 C 315 LYS ALA SER VAL PHE ASP PHE ASP MET GLU ASP ILE LYS SEQRES 24 C 315 VAL GLU GLY TYR ASP PRO HIS PRO THR ILE LYS ALA PRO SEQRES 25 C 315 ILE ALA VAL SEQRES 1 D 315 MET GLU GLU ALA TYR LEU ALA LEU GLY LYS LYS ILE LEU SEQRES 2 D 315 GLU GLU GLY HIS PHE LYS GLU ASP ARG THR GLY THR GLY SEQRES 3 D 315 THR TYR SER LEU PHE GLY TYR GLN MET ARG PHE ASP LEU SEQRES 4 D 315 ALA LYS GLY PHE PRO LEU LEU THR THR LYS ARG VAL PRO SEQRES 5 D 315 PHE GLY LEU ILE LYS SER GLU LEU LEU TRP PHE LEU LYS SEQRES 6 D 315 GLY ASP THR ASN ILE ARG TYR LEU LEU GLU ARG ASN ASN SEQRES 7 D 315 HIS ILE TRP ASP GLU TRP ALA PHE GLU ARG TYR VAL LYS SEQRES 8 D 315 SER ALA ASP TYR GLN GLY PRO ASP MET THR ASP PHE GLY SEQRES 9 D 315 HIS ARG VAL LEU GLN ASP PRO ALA PHE ALA GLU GLN TYR SEQRES 10 D 315 LYS GLU GLU HIS GLN LYS PHE CYS ASP ALA ILE LEU ASN SEQRES 11 D 315 ASP ALA GLU PHE ALA GLU LYS TYR GLY GLU LEU GLY ASN SEQRES 12 D 315 ILE TYR GLY ALA GLN TRP ARG HIS TRP GLU THR LYS ASP SEQRES 13 D 315 GLY SER PHE ILE ASP GLN LEU ALA ASN VAL ILE GLU MET SEQRES 14 D 315 ILE LYS THR ASN PRO ASP SER ARG ARG LEU ILE VAL SER SEQRES 15 D 315 ALA TRP ASN PRO GLU ASP VAL PRO SER MET ALA LEU PRO SEQRES 16 D 315 PRO CYS HIS THR MET PHE GLN PHE TYR VAL ASN GLU GLY SEQRES 17 D 315 LYS LEU SER CYS GLN LEU TYR GLN ARG SER ALA ASP VAL SEQRES 18 D 315 PHE LEU GLY VAL PRO PHE ASN ILE ALA SER TYR ALA LEU SEQRES 19 D 315 LEU THR HIS LEU ILE ALA HIS GLU THR GLY LEU GLU VAL SEQRES 20 D 315 GLY GLU PHE VAL HIS THR LEU GLY ASP ALA HIS LEU TYR SEQRES 21 D 315 GLN ASN HIS VAL GLU GLN MET GLN GLU GLN LEU SER ARG SEQRES 22 D 315 GLU VAL ARG SER PHE PRO THR LEU VAL LEU ASN PRO ASP SEQRES 23 D 315 LYS ALA SER VAL PHE ASP PHE ASP MET GLU ASP ILE LYS SEQRES 24 D 315 VAL GLU GLY TYR ASP PRO HIS PRO THR ILE LYS ALA PRO SEQRES 25 D 315 ILE ALA VAL HET SO4 A 401 5 HET SO4 A 402 5 HET THF B 401 34 HET SO4 C 401 5 HET EDO C 402 4 HET SO4 D 401 5 HET SS7 D 402 27 HET EDO D 403 4 HETNAM SO4 SULFATE ION HETNAM THF 5-HYDROXYMETHYLENE-6-HYDROFOLIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM SS7 4-{[(2S)-2-(1,3-DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2-YL) HETNAM 2 SS7 PROPYL]OXY}-3,5-DIMETHYLPHENYL ACETATE HETSYN EDO ETHYLENE GLYCOL FORMUL 5 SO4 4(O4 S 2-) FORMUL 7 THF C20 H23 N7 O7 FORMUL 9 EDO 2(C2 H6 O2) FORMUL 11 SS7 C21 H21 N O5 FORMUL 13 HOH *205(H2 O) HELIX 1 1 MET A 1 GLY A 16 1 16 HELIX 2 2 PRO A 52 LYS A 65 1 14 HELIX 3 3 ILE A 70 GLU A 75 1 6 HELIX 4 4 TRP A 81 LYS A 91 1 11 HELIX 5 5 GLU A 119 ASP A 131 1 13 HELIX 6 6 GLU A 133 TYR A 138 1 6 HELIX 7 7 ILE A 144 HIS A 151 1 8 HELIX 8 8 ASP A 161 ASN A 173 1 13 HELIX 9 9 ASP A 188 MET A 192 5 5 HELIX 10 10 LEU A 223 THR A 243 1 21 HELIX 11 11 HIS A 263 SER A 272 1 10 HELIX 12 12 ASP A 294 GLU A 296 5 3 HELIX 13 13 GLU B 2 GLY B 16 1 15 HELIX 14 14 ALA B 40 GLY B 42 5 3 HELIX 15 15 PRO B 52 LYS B 65 1 14 HELIX 16 16 ILE B 70 GLU B 75 1 6 HELIX 17 17 TRP B 81 SER B 92 1 12 HELIX 18 18 ASP B 102 ASP B 110 1 9 HELIX 19 19 ASP B 110 ASP B 131 1 22 HELIX 20 20 ASP B 131 GLY B 139 1 9 HELIX 21 21 ILE B 144 HIS B 151 1 8 HELIX 22 22 ASP B 161 ASN B 173 1 13 HELIX 23 23 ASP B 188 MET B 192 5 5 HELIX 24 24 GLY B 224 GLY B 244 1 21 HELIX 25 25 HIS B 263 SER B 272 1 10 HELIX 26 26 SER B 289 PHE B 293 5 5 HELIX 27 27 ASP B 294 GLU B 296 5 3 HELIX 28 28 GLU C 2 GLY C 16 1 15 HELIX 29 29 ALA C 40 GLY C 42 5 3 HELIX 30 30 PRO C 52 LYS C 65 1 14 HELIX 31 31 ILE C 70 GLU C 75 1 6 HELIX 32 32 TRP C 81 VAL C 90 1 10 HELIX 33 33 PHE C 134 GLY C 139 1 6 HELIX 34 34 ILE C 144 HIS C 151 1 8 HELIX 35 35 ASP C 161 ASN C 173 1 13 HELIX 36 36 ASP C 188 MET C 192 5 5 HELIX 37 37 LEU C 223 THR C 243 1 21 HELIX 38 38 HIS C 263 SER C 272 1 10 HELIX 39 39 SER C 289 PHE C 293 5 5 HELIX 40 40 ASP C 294 GLU C 296 5 3 HELIX 41 41 GLU D 2 GLY D 16 1 15 HELIX 42 42 ALA D 40 GLY D 42 5 3 HELIX 43 43 PRO D 52 LYS D 65 1 14 HELIX 44 44 ILE D 70 GLU D 75 1 6 HELIX 45 45 TRP D 81 SER D 92 1 12 HELIX 46 46 ASP D 102 ASP D 110 1 9 HELIX 47 47 ASP D 110 ASP D 131 1 22 HELIX 48 48 ASP D 131 GLY D 139 1 9 HELIX 49 49 ILE D 144 HIS D 151 1 8 HELIX 50 50 ASP D 161 ASN D 173 1 13 HELIX 51 51 ASP D 188 MET D 192 5 5 HELIX 52 52 LEU D 223 GLY D 244 1 22 HELIX 53 53 HIS D 263 LEU D 271 1 9 HELIX 54 54 SER D 289 PHE D 293 5 5 HELIX 55 55 ASP D 294 GLU D 296 5 3 SHEET 1 A 6 HIS A 17 GLU A 20 0 SHEET 2 A 6 GLY A 26 ASP A 38 -1 O SER A 29 N HIS A 17 SHEET 3 A 6 GLU A 246 TYR A 260 -1 O LEU A 254 N TYR A 33 SHEET 4 A 6 LYS A 209 ASP A 220 1 N LEU A 210 O GLY A 248 SHEET 5 A 6 HIS A 198 ASN A 206 -1 N TYR A 204 O SER A 211 SHEET 6 A 6 ILE A 180 SER A 182 -1 N VAL A 181 O PHE A 201 SHEET 1 B 2 TRP A 152 GLU A 153 0 SHEET 2 B 2 PHE A 159 ILE A 160 -1 O ILE A 160 N TRP A 152 SHEET 1 C 2 THR A 280 LEU A 283 0 SHEET 2 C 2 ILE A 298 GLU A 301 -1 O GLU A 301 N THR A 280 SHEET 1 D 6 HIS B 17 LYS B 19 0 SHEET 2 D 6 THR B 27 ASP B 38 -1 O THR B 27 N LYS B 19 SHEET 3 D 6 GLU B 246 TYR B 260 -1 O HIS B 252 N MET B 35 SHEET 4 D 6 LYS B 209 ASP B 220 1 N ALA B 219 O ASP B 256 SHEET 5 D 6 MET B 200 ASN B 206 -1 N MET B 200 O TYR B 215 SHEET 6 D 6 ILE B 180 SER B 182 -1 N VAL B 181 O PHE B 201 SHEET 1 E 2 TRP B 152 GLU B 153 0 SHEET 2 E 2 PHE B 159 ILE B 160 -1 O ILE B 160 N TRP B 152 SHEET 1 F 2 THR B 280 LEU B 283 0 SHEET 2 F 2 ILE B 298 GLU B 301 -1 O LYS B 299 N VAL B 282 SHEET 1 G 6 HIS C 17 GLU C 20 0 SHEET 2 G 6 GLY C 26 ASP C 38 -1 O SER C 29 N HIS C 17 SHEET 3 G 6 GLU C 246 TYR C 260 -1 O LEU C 254 N TYR C 33 SHEET 4 G 6 LYS C 209 ASP C 220 1 N CYS C 212 O VAL C 251 SHEET 5 G 6 HIS C 198 ASN C 206 -1 N TYR C 204 O SER C 211 SHEET 6 G 6 ILE C 180 SER C 182 -1 N VAL C 181 O PHE C 201 SHEET 1 H 2 TRP C 152 GLU C 153 0 SHEET 2 H 2 PHE C 159 ILE C 160 -1 O ILE C 160 N TRP C 152 SHEET 1 I 2 THR C 280 LEU C 283 0 SHEET 2 I 2 ILE C 298 GLU C 301 -1 O LYS C 299 N VAL C 282 SHEET 1 J 6 HIS D 17 LYS D 19 0 SHEET 2 J 6 THR D 27 ASP D 38 -1 O THR D 27 N LYS D 19 SHEET 3 J 6 GLU D 246 TYR D 260 -1 O HIS D 252 N MET D 35 SHEET 4 J 6 LYS D 209 ASP D 220 1 N LEU D 210 O GLU D 246 SHEET 5 J 6 MET D 200 ASN D 206 -1 N GLN D 202 O GLN D 213 SHEET 6 J 6 ILE D 180 SER D 182 -1 N VAL D 181 O PHE D 201 SHEET 1 K 2 TRP D 152 GLU D 153 0 SHEET 2 K 2 PHE D 159 ILE D 160 -1 O ILE D 160 N TRP D 152 SHEET 1 L 2 THR D 280 LEU D 283 0 SHEET 2 L 2 ILE D 298 GLU D 301 -1 O LYS D 299 N VAL D 282 SITE 1 AC1 5 ARG A 177 ARG A 178 ARG B 22 ARG B 217 SITE 2 AC1 5 SER B 218 SITE 1 AC2 4 ARG A 217 SER A 218 ARG B 177 ARG B 178 SITE 1 AC3 18 LEU B 55 ILE B 80 TRP B 81 TRP B 84 SITE 2 AC3 18 LEU B 194 HIS B 198 ASP B 220 LEU B 223 SITE 3 AC3 18 GLY B 224 PHE B 227 TYR B 260 ILE B 313 SITE 4 AC3 18 ALA B 314 HOH B 506 HOH B 512 HOH B 551 SITE 5 AC3 18 HOH B 562 HOH B 567 SITE 1 AC4 5 ARG C 217 SER C 218 HOH C 514 ARG D 177 SITE 2 AC4 5 ARG D 178 SITE 1 AC5 4 ALA C 4 TYR C 33 GLN C 34 ARG C 36 SITE 1 AC6 6 ARG C 177 ARG C 178 HOH C 533 ARG D 22 SITE 2 AC6 6 ARG D 217 SER D 218 SITE 1 AC7 13 GLU D 59 ILE D 80 TRP D 84 LEU D 194 SITE 2 AC7 13 ASP D 220 LEU D 223 GLY D 224 PHE D 227 SITE 3 AC7 13 ASN D 228 ILE D 313 ALA D 314 HOH D 558 SITE 4 AC7 13 HOH D 562 SITE 1 AC8 4 LEU B 13 TYR B 28 LEU D 13 TYR D 28 CRYST1 72.082 94.225 96.816 90.00 94.33 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013873 0.000000 0.001050 0.00000 SCALE2 0.000000 0.010613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010358 0.00000 MASTER 394 0 8 55 40 0 18 6 0 0 0 100 END