HEADER HYDROLASE/RNA 04-NOV-13 4NHA TITLE STRUCTURE OF HUMAN DICER PLATFORM-PAZ-CONNECTOR HELIX CASSETTE IN TITLE 2 COMPLEX WITH 16-MER SIRNA HAVING 5'-P AND UU-3' ENDS (3.4 ANGSTROM TITLE 3 RESOLUTION) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDORIBONUCLEASE DICER; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PLATFORM-PAZ-CONNECTOR HELIX CASSETTE (UNP RESIDUES 765- COMPND 5 1065); COMPND 6 SYNONYM: HELICASE WITH RNASE MOTIF, HELICASE MOI; COMPND 7 EC: 3.1.26.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 5'-R(P*GP*CP*GP*UP*UP*GP*GP*CP*CP*AP*AP*CP*GP*CP*UP*U)-3'; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: SIRNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DICER, DICER1, HERNA, KIAA0928; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS PAZ DOMAIN, PLATFORM DOMAIN, CONNECTOR HELIX, SIRNA, RNASE III KEYWDS 2 DOMAIN, ENDORIBONUCLEASE, PRE-MIRNA, HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.K.SIMANSHU,Y.TIAN,J.-B.MA,D.J.PATEL REVDAT 4 24-JAN-18 4NHA 1 AUTHOR REVDAT 3 15-NOV-17 4NHA 1 REMARK REVDAT 2 12-MAR-14 4NHA 1 JRNL REVDAT 1 05-MAR-14 4NHA 0 JRNL AUTH Y.TIAN,D.K.SIMANSHU,J.B.MA,J.E.PARK,I.HEO,V.N.KIM,D.J.PATEL JRNL TITL A PHOSPHATE-BINDING POCKET WITHIN THE PLATFORM-PAZ-CONNECTOR JRNL TITL 2 HELIX CASSETTE OF HUMAN DICER. JRNL REF MOL.CELL V. 53 606 2014 JRNL REFN ISSN 1097-2765 JRNL PMID 24486018 JRNL DOI 10.1016/J.MOLCEL.2014.01.003 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 8068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.281 REMARK 3 R VALUE (WORKING SET) : 0.277 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7525 - 6.1290 0.98 1275 141 0.2620 0.2854 REMARK 3 2 6.1290 - 4.8891 0.99 1220 137 0.2878 0.3302 REMARK 3 3 4.8891 - 4.2782 0.99 1213 134 0.2530 0.2967 REMARK 3 4 4.2782 - 3.8903 1.00 1205 134 0.2814 0.3251 REMARK 3 5 3.8903 - 3.6133 0.99 1196 133 0.3083 0.3738 REMARK 3 6 3.6133 - 3.4010 0.97 1152 128 0.3344 0.4057 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.560 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 107.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 142.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2196 REMARK 3 ANGLE : 1.191 3078 REMARK 3 CHIRALITY : 0.086 380 REMARK 3 PLANARITY : 0.005 328 REMARK 3 DIHEDRAL : 14.170 820 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 760:829 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3337 3.6916 -25.1738 REMARK 3 T TENSOR REMARK 3 T11: 1.0330 T22: 3.1681 REMARK 3 T33: 0.6140 T12: 0.1861 REMARK 3 T13: -0.2011 T23: -0.1501 REMARK 3 L TENSOR REMARK 3 L11: 1.2696 L22: 3.5777 REMARK 3 L33: 4.6572 L12: -1.7719 REMARK 3 L13: -1.4819 L23: 0.3756 REMARK 3 S TENSOR REMARK 3 S11: 0.2943 S12: 2.5816 S13: -0.8902 REMARK 3 S21: 0.1076 S22: -0.5712 S23: 0.5892 REMARK 3 S31: -0.2489 S32: 0.0233 S33: 0.4097 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 830:891 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6676 16.8506 -18.1442 REMARK 3 T TENSOR REMARK 3 T11: 0.9569 T22: 2.7933 REMARK 3 T33: 0.9733 T12: -0.2270 REMARK 3 T13: 0.0899 T23: 0.3459 REMARK 3 L TENSOR REMARK 3 L11: 5.7040 L22: 7.7072 REMARK 3 L33: 7.3617 L12: -6.4550 REMARK 3 L13: 6.4540 L23: -7.1070 REMARK 3 S TENSOR REMARK 3 S11: -1.3392 S12: 2.8244 S13: 0.5239 REMARK 3 S21: 1.9699 S22: 0.9128 S23: -0.2006 REMARK 3 S31: -2.0561 S32: 0.7307 S33: 0.2755 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 892:913 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.8875 21.9062 0.1499 REMARK 3 T TENSOR REMARK 3 T11: 0.9141 T22: 1.2257 REMARK 3 T33: 1.7625 T12: -0.0373 REMARK 3 T13: -0.0064 T23: 0.2380 REMARK 3 L TENSOR REMARK 3 L11: 5.1354 L22: 1.6725 REMARK 3 L33: 6.5423 L12: 2.5219 REMARK 3 L13: 2.8252 L23: 2.8624 REMARK 3 S TENSOR REMARK 3 S11: 0.3172 S12: -0.4300 S13: 0.1089 REMARK 3 S21: 0.0397 S22: -2.1032 S23: -1.2358 REMARK 3 S31: -1.0855 S32: -1.0363 S33: 1.2838 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 914:984 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.9165 7.6871 2.1139 REMARK 3 T TENSOR REMARK 3 T11: 0.8615 T22: 1.2674 REMARK 3 T33: 0.8403 T12: -0.1367 REMARK 3 T13: 0.2224 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.5877 L22: 9.2295 REMARK 3 L33: 8.1145 L12: -2.1051 REMARK 3 L13: 2.0758 L23: 1.0924 REMARK 3 S TENSOR REMARK 3 S11: -0.1602 S12: -0.1492 S13: 0.1023 REMARK 3 S21: 1.3021 S22: 0.0144 S23: 0.6923 REMARK 3 S31: 0.6257 S32: -1.2926 S33: 0.0644 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 985:992 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5550 -6.1015 -14.3476 REMARK 3 T TENSOR REMARK 3 T11: 1.4859 T22: 2.8305 REMARK 3 T33: 0.7592 T12: -0.0420 REMARK 3 T13: -0.7394 T23: -0.1796 REMARK 3 L TENSOR REMARK 3 L11: 5.5539 L22: 1.3769 REMARK 3 L33: 1.7812 L12: 1.4691 REMARK 3 L13: 1.2281 L23: 0.1249 REMARK 3 S TENSOR REMARK 3 S11: 0.8683 S12: 0.5141 S13: -1.2025 REMARK 3 S21: -0.3221 S22: -0.0524 S23: 0.0371 REMARK 3 S31: 0.3081 S32: 0.1753 S33: -0.8912 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND ( RESSEQ 1:16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8512 -14.4582 2.5731 REMARK 3 T TENSOR REMARK 3 T11: 1.6897 T22: 1.6788 REMARK 3 T33: 1.8133 T12: -0.1252 REMARK 3 T13: -0.2584 T23: 0.4349 REMARK 3 L TENSOR REMARK 3 L11: 8.8751 L22: 8.8071 REMARK 3 L33: 1.2339 L12: -8.9599 REMARK 3 L13: -3.3200 L23: 3.0990 REMARK 3 S TENSOR REMARK 3 S11: -0.3529 S12: -1.0903 S13: -2.5478 REMARK 3 S21: 0.8491 S22: 0.4360 S23: 1.4978 REMARK 3 S31: 1.1644 S32: -0.6673 S33: -0.0520 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND ( RESSEQ 1021:1053 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.5019 6.2432 -11.7029 REMARK 3 T TENSOR REMARK 3 T11: 0.2544 T22: 2.7277 REMARK 3 T33: 0.3913 T12: -0.3265 REMARK 3 T13: 0.2995 T23: 0.2705 REMARK 3 L TENSOR REMARK 3 L11: 4.1291 L22: 3.5494 REMARK 3 L33: 4.7590 L12: -0.1516 REMARK 3 L13: -1.4078 L23: 0.4566 REMARK 3 S TENSOR REMARK 3 S11: 0.2202 S12: 1.3622 S13: 0.1569 REMARK 3 S21: -0.3387 S22: -0.0742 S23: 0.4998 REMARK 3 S31: 0.3757 S32: 1.7422 S33: 0.1409 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NHA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083201. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97947 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8091 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.52 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM CHLORIDE, 0.1 M REMARK 280 MAGNESIUM ACETATE, 0.05 M SODIUM CACODYLATE, PH 6.5, 12 % REMARK 280 PEG8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 87.23450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 87.23450 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.37850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 87.23450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.68925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 87.23450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.06775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 87.23450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.06775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 87.23450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.68925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 87.23450 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 87.23450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.37850 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 87.23450 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 87.23450 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 37.37850 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 87.23450 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 56.06775 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 87.23450 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 18.68925 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 87.23450 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 18.68925 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 87.23450 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 56.06775 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 87.23450 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 87.23450 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 37.37850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 754 REMARK 465 ASP A 755 REMARK 465 GLN A 756 REMARK 465 PRO A 757 REMARK 465 CYS A 758 REMARK 465 TYR A 759 REMARK 465 ASN A 776 REMARK 465 PHE A 777 REMARK 465 ARG A 778 REMARK 465 ARG A 779 REMARK 465 PRO A 804 REMARK 465 HIS A 805 REMARK 465 PHE A 806 REMARK 465 GLU A 851 REMARK 465 LYS A 852 REMARK 465 PRO A 853 REMARK 465 ALA A 854 REMARK 465 LEU A 855 REMARK 465 GLU A 856 REMARK 465 PHE A 857 REMARK 465 LYS A 858 REMARK 465 PRO A 859 REMARK 465 THR A 860 REMARK 465 ASP A 861 REMARK 465 ALA A 862 REMARK 465 ASP A 863 REMARK 465 VAL A 874 REMARK 465 ASN A 875 REMARK 465 ASP A 876 REMARK 465 SER A 877 REMARK 465 SER A 878 REMARK 465 GLU A 894 REMARK 465 ALA A 895 REMARK 465 ARG A 896 REMARK 465 ILE A 897 REMARK 465 GLY A 898 REMARK 465 ILE A 899 REMARK 465 PRO A 900 REMARK 465 SER A 901 REMARK 465 ARG A 993 REMARK 465 HIS A 994 REMARK 465 LEU A 995 REMARK 465 ASN A 996 REMARK 465 GLN A 997 REMARK 465 LYS A 998 REMARK 465 GLY A 999 REMARK 465 LYS A 1000 REMARK 465 ALA A 1001 REMARK 465 LEU A 1002 REMARK 465 PRO A 1003 REMARK 465 LEU A 1004 REMARK 465 SER A 1005 REMARK 465 SER A 1006 REMARK 465 ALA A 1007 REMARK 465 GLU A 1008 REMARK 465 LYS A 1009 REMARK 465 ARG A 1010 REMARK 465 LYS A 1011 REMARK 465 ALA A 1012 REMARK 465 LYS A 1013 REMARK 465 TRP A 1014 REMARK 465 GLU A 1015 REMARK 465 SER A 1016 REMARK 465 LEU A 1017 REMARK 465 GLN A 1018 REMARK 465 ASN A 1019 REMARK 465 LEU A 1054 REMARK 465 LEU A 1055 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 768 OG1 CG2 REMARK 470 THR A 769 OG1 CG2 REMARK 470 LEU A 771 CG CD1 CD2 REMARK 470 ASP A 773 CG OD1 OD2 REMARK 470 GLU A 774 CG CD OE1 OE2 REMARK 470 LEU A 775 CG CD1 CD2 REMARK 470 LYS A 781 CG CD CE NZ REMARK 470 TYR A 783 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 800 CG1 CG2 CD1 REMARK 470 ILE A 803 CG1 CG2 CD1 REMARK 470 VAL A 815 CG1 CG2 REMARK 470 SER A 818 OG REMARK 470 GLU A 820 CG CD OE1 OE2 REMARK 470 LYS A 822 CG CD CE NZ REMARK 470 LYS A 823 CG CD CE NZ REMARK 470 PHE A 826 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MSE A 827 CG SE CE REMARK 470 LEU A 830 CG CD1 CD2 REMARK 470 GLN A 831 CG CD OE1 NE2 REMARK 470 MSE A 832 CG SE CE REMARK 470 GLU A 834 CG CD OE1 OE2 REMARK 470 SER A 864 OG REMARK 470 LEU A 869 CG CD1 CD2 REMARK 470 LYS A 892 CG CD CE NZ REMARK 470 THR A 902 OG1 CG2 REMARK 470 LYS A 903 CG CD CE NZ REMARK 470 THR A 905 OG1 CG2 REMARK 470 LYS A 906 CG CD CE NZ REMARK 470 GLU A 907 CG CD OE1 OE2 REMARK 470 LYS A 913 CG CD CE NZ REMARK 470 ASP A 930 CG OD1 OD2 REMARK 470 ASP A 943 CG OD1 OD2 REMARK 470 LYS A 949 CG CD CE NZ REMARK 470 GLU A 956 CG CD OE1 OE2 REMARK 470 ASP A 979 CG OD1 OD2 REMARK 470 ASP A 981 CG OD1 OD2 REMARK 470 ARG A 986 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 988 CG OD1 ND2 REMARK 470 LEU A 989 CG CD1 CD2 REMARK 470 ARG A1039 CG CD NE CZ NH1 NH2 REMARK 470 SER A1046 OG REMARK 470 LEU A1051 CG CD1 CD2 REMARK 470 HIS A1052 CG ND1 CD2 CE1 NE2 REMARK 470 CYS A1053 SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G B 1 P G B 1 OP3 -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 781 -145.82 50.88 REMARK 500 THR A 796 -165.99 -75.39 REMARK 500 ALA A 797 0.33 85.84 REMARK 500 LYS A 822 -59.83 -120.76 REMARK 500 ALA A 865 179.21 177.76 REMARK 500 TYR A 866 -166.70 -72.23 REMARK 500 ASP A 881 -142.02 58.15 REMARK 500 ARG A 927 59.26 -150.50 REMARK 500 GLN A 931 77.63 46.58 REMARK 500 LEU A1051 -60.29 -141.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NGB RELATED DB: PDB REMARK 900 RELATED ID: 4NGC RELATED DB: PDB REMARK 900 RELATED ID: 4NGD RELATED DB: PDB REMARK 900 RELATED ID: 4NGF RELATED DB: PDB REMARK 900 RELATED ID: 4NGG RELATED DB: PDB REMARK 900 RELATED ID: 4NH3 RELATED DB: PDB REMARK 900 RELATED ID: 4NH5 RELATED DB: PDB REMARK 900 RELATED ID: 4NH6 RELATED DB: PDB DBREF 4NHA A 755 1055 UNP Q9UPY3 DICER_HUMAN 765 1065 DBREF 4NHA B 1 16 PDB 4NHA 4NHA 1 16 SEQADV 4NHA SER A 754 UNP Q9UPY3 EXPRESSION TAG SEQRES 1 A 302 SER ASP GLN PRO CYS TYR LEU TYR VAL ILE GLY MSE VAL SEQRES 2 A 302 LEU THR THR PRO LEU PRO ASP GLU LEU ASN PHE ARG ARG SEQRES 3 A 302 ARG LYS LEU TYR PRO PRO GLU ASP THR THR ARG CYS PHE SEQRES 4 A 302 GLY ILE LEU THR ALA LYS PRO ILE PRO GLN ILE PRO HIS SEQRES 5 A 302 PHE PRO VAL TYR THR ARG SER GLY GLU VAL THR ILE SER SEQRES 6 A 302 ILE GLU LEU LYS LYS SER GLY PHE MSE LEU SER LEU GLN SEQRES 7 A 302 MSE LEU GLU LEU ILE THR ARG LEU HIS GLN TYR ILE PHE SEQRES 8 A 302 SER HIS ILE LEU ARG LEU GLU LYS PRO ALA LEU GLU PHE SEQRES 9 A 302 LYS PRO THR ASP ALA ASP SER ALA TYR CYS VAL LEU PRO SEQRES 10 A 302 LEU ASN VAL VAL ASN ASP SER SER THR LEU ASP ILE ASP SEQRES 11 A 302 PHE LYS PHE MSE GLU ASP ILE GLU LYS SER GLU ALA ARG SEQRES 12 A 302 ILE GLY ILE PRO SER THR LYS TYR THR LYS GLU THR PRO SEQRES 13 A 302 PHE VAL PHE LYS LEU GLU ASP TYR GLN ASP ALA VAL ILE SEQRES 14 A 302 ILE PRO ARG TYR ARG ASN PHE ASP GLN PRO HIS ARG PHE SEQRES 15 A 302 TYR VAL ALA ASP VAL TYR THR ASP LEU THR PRO LEU SER SEQRES 16 A 302 LYS PHE PRO SER PRO GLU TYR GLU THR PHE ALA GLU TYR SEQRES 17 A 302 TYR LYS THR LYS TYR ASN LEU ASP LEU THR ASN LEU ASN SEQRES 18 A 302 GLN PRO LEU LEU ASP VAL ASP HIS THR SER SER ARG LEU SEQRES 19 A 302 ASN LEU LEU THR PRO ARG HIS LEU ASN GLN LYS GLY LYS SEQRES 20 A 302 ALA LEU PRO LEU SER SER ALA GLU LYS ARG LYS ALA LYS SEQRES 21 A 302 TRP GLU SER LEU GLN ASN LYS GLN ILE LEU VAL PRO GLU SEQRES 22 A 302 LEU CYS ALA ILE HIS PRO ILE PRO ALA SER LEU TRP ARG SEQRES 23 A 302 LYS ALA VAL CYS LEU PRO SER ILE LEU TYR ARG LEU HIS SEQRES 24 A 302 CYS LEU LEU SEQRES 1 B 16 G C G U U G G C C A A C G SEQRES 2 B 16 C U U MODRES 4NHA MSE A 765 MET SELENOMETHIONINE MODRES 4NHA MSE A 827 MET SELENOMETHIONINE MODRES 4NHA MSE A 832 MET SELENOMETHIONINE MODRES 4NHA MSE A 887 MET SELENOMETHIONINE HET MSE A 765 8 HET MSE A 827 5 HET MSE A 832 5 HET MSE A 887 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) HELIX 1 1 PRO A 784 THR A 788 5 5 HELIX 2 2 SER A 829 ILE A 847 1 19 HELIX 3 3 ASP A 883 GLU A 891 1 9 HELIX 4 4 LEU A 914 GLN A 918 5 5 HELIX 5 5 TYR A 926 ASN A 928 5 3 HELIX 6 6 THR A 957 ASN A 967 1 11 HELIX 7 7 VAL A 1024 GLU A 1026 5 3 HELIX 8 8 PRO A 1034 VAL A 1042 1 9 HELIX 9 9 CYS A 1043 CYS A 1053 1 11 SHEET 1 A 5 VAL A 808 THR A 810 0 SHEET 2 A 5 GLY A 813 LEU A 821 -1 O VAL A 815 N VAL A 808 SHEET 3 A 5 TYR A 761 PRO A 770 -1 N GLY A 764 O SER A 818 SHEET 4 A 5 CYS A 791 ILE A 794 -1 O PHE A 792 N ILE A 763 SHEET 5 A 5 VAL A 868 LEU A 871 -1 O LEU A 869 N GLY A 793 SHEET 1 B 5 ILE A1022 LEU A1023 0 SHEET 2 B 5 LEU A 977 HIS A 982 -1 N LEU A 978 O LEU A1023 SHEET 3 B 5 PHE A 935 TYR A 941 -1 N ALA A 938 O ASP A 979 SHEET 4 B 5 VAL A 921 PRO A 924 -1 N ILE A 922 O PHE A 935 SHEET 5 B 5 CYS A1028 HIS A1031 -1 O HIS A1031 N VAL A 921 LINK C GLY A 764 N MSE A 765 1555 1555 1.33 LINK C MSE A 765 N VAL A 766 1555 1555 1.33 LINK C PHE A 826 N MSE A 827 1555 1555 1.33 LINK C MSE A 827 N LEU A 828 1555 1555 1.33 LINK C GLN A 831 N MSE A 832 1555 1555 1.33 LINK C MSE A 832 N LEU A 833 1555 1555 1.33 LINK C PHE A 886 N MSE A 887 1555 1555 1.33 LINK C MSE A 887 N GLU A 888 1555 1555 1.33 CRYST1 174.469 174.469 74.757 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005732 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005732 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013377 0.00000 MASTER 545 0 4 9 10 0 0 6 0 0 0 26 END