HEADER OXIDOREDUCTASE 24-OCT-13 4NCQ TITLE CRYSTAL STRUCTURE OF NISOD H1A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [NI]; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 15-131; COMPND 5 SYNONYM: NISOD, NICKEL-CONTAINING SUPEROXIDE DISMUTASE; COMPND 6 EC: 1.15.1.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 1902; SOURCE 4 GENE: 2SC7G11.16C, SCO5254, SOD1, SODN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS ANTIOXIDANT, HEXAMER, SUPEROXIDE DISMUTASE, NISOD, SOD, KEYWDS 2 OXIDOREDUCTASE, METAL-BINDING, NI-BINDING, NI EXPDTA X-RAY DIFFRACTION AUTHOR A.I.GUCE,S.C.GARMAN REVDAT 3 15-NOV-17 4NCQ 1 REMARK REVDAT 2 08-APR-15 4NCQ 1 JRNL REVDAT 1 24-DEC-14 4NCQ 0 JRNL AUTH K.C.RYAN,A.I.GUCE,O.E.JOHNSON,T.C.BRUNOLD,D.E.CABELLI, JRNL AUTH 2 S.C.GARMAN,M.J.MARONEY JRNL TITL NICKEL SUPEROXIDE DISMUTASE: STRUCTURAL AND FUNCTIONAL ROLES JRNL TITL 2 OF HIS1 AND ITS H-BONDING NETWORK. JRNL REF BIOCHEMISTRY V. 54 1016 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25580509 JRNL DOI 10.1021/BI501258U REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 20025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 996 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.08 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1294 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2647 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.99000 REMARK 3 B22 (A**2) : -0.33000 REMARK 3 B33 (A**2) : 2.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.247 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.202 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.954 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2713 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2595 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3670 ; 0.943 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6007 ; 0.724 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ; 4.024 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;34.450 ;25.116 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;13.122 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;22.527 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3040 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 603 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 14 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 8 A 14 1 REMARK 3 1 B 8 B 14 1 REMARK 3 1 C 8 C 14 1 REMARK 3 2 A 15 A 15 2 REMARK 3 2 B 15 B 15 2 REMARK 3 2 C 15 C 15 2 REMARK 3 3 A 16 A 25 1 REMARK 3 3 B 16 B 25 1 REMARK 3 3 C 16 C 25 1 REMARK 3 4 A 26 A 27 2 REMARK 3 4 B 26 B 27 2 REMARK 3 4 C 26 C 27 2 REMARK 3 5 A 28 A 28 1 REMARK 3 5 B 28 B 28 1 REMARK 3 5 C 28 C 28 1 REMARK 3 6 A 29 A 36 4 REMARK 3 6 B 29 B 36 4 REMARK 3 6 C 29 C 36 4 REMARK 3 7 A 37 A 63 1 REMARK 3 7 B 37 B 63 1 REMARK 3 7 C 37 C 63 1 REMARK 3 8 A 64 A 64 3 REMARK 3 8 B 64 B 64 3 REMARK 3 8 C 64 C 64 3 REMARK 3 9 A 65 A 91 1 REMARK 3 9 B 65 B 91 1 REMARK 3 9 C 65 C 91 1 REMARK 3 10 A 92 A 96 4 REMARK 3 10 B 92 B 96 4 REMARK 3 10 C 92 C 96 4 REMARK 3 11 A 97 A 97 1 REMARK 3 11 B 97 B 97 1 REMARK 3 11 C 97 C 97 1 REMARK 3 12 A 98 A 99 4 REMARK 3 12 B 98 B 99 4 REMARK 3 12 C 98 C 99 4 REMARK 3 13 A 100 A 112 1 REMARK 3 13 B 100 B 112 1 REMARK 3 13 C 100 C 112 1 REMARK 3 14 A 113 A 116 4 REMARK 3 14 B 113 B 116 4 REMARK 3 14 C 113 C 116 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 332 ; 0.650 ;12.000 REMARK 3 MEDIUM POSITIONAL 1 B (A): 332 ; 0.630 ;12.000 REMARK 3 MEDIUM POSITIONAL 1 C (A): 332 ; 0.750 ;12.000 REMARK 3 LOOSE POSITIONAL 1 A (A): 16 ; 0.980 ;18.000 REMARK 3 LOOSE POSITIONAL 1 B (A): 16 ; 0.680 ;18.000 REMARK 3 LOOSE POSITIONAL 1 C (A): 16 ; 0.800 ;18.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 1387 ; 2.670 ; 0.500 REMARK 3 TIGHT THERMAL 1 B (A**2): 1387 ; 2.630 ; 0.500 REMARK 3 TIGHT THERMAL 1 C (A**2): 1387 ; 2.480 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 332 ; 5.010 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 332 ; 3.730 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 332 ; 4.490 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 16 ; 3.670 ;10.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 16 ; 4.890 ;10.000 REMARK 3 LOOSE THERMAL 1 C (A**2): 16 ; 3.950 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6680 24.2010 16.7120 REMARK 3 T TENSOR REMARK 3 T11: 0.0905 T22: 0.0157 REMARK 3 T33: 0.0817 T12: 0.0077 REMARK 3 T13: 0.0360 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 3.9195 L22: 1.8510 REMARK 3 L33: 0.6475 L12: -1.8426 REMARK 3 L13: -0.0605 L23: 0.4205 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: -0.0009 S13: 0.2486 REMARK 3 S21: -0.0992 S22: 0.0076 S23: -0.0987 REMARK 3 S31: -0.0705 S32: 0.0264 S33: -0.0441 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 116 REMARK 3 ORIGIN FOR THE GROUP (A): 0.9170 -7.6910 16.3990 REMARK 3 T TENSOR REMARK 3 T11: 0.0704 T22: 0.0541 REMARK 3 T33: 0.0112 T12: 0.0148 REMARK 3 T13: 0.0029 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 2.0349 L22: 1.5907 REMARK 3 L33: 2.0807 L12: 1.3586 REMARK 3 L13: -1.1858 L23: -0.8938 REMARK 3 S TENSOR REMARK 3 S11: -0.1174 S12: 0.2496 S13: -0.0391 REMARK 3 S21: -0.0653 S22: 0.0898 S23: 0.0573 REMARK 3 S31: 0.0808 S32: -0.1248 S33: 0.0276 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 8 C 116 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7110 8.3290 39.8940 REMARK 3 T TENSOR REMARK 3 T11: 0.0505 T22: 0.0429 REMARK 3 T33: 0.0656 T12: -0.0264 REMARK 3 T13: -0.0425 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 1.2443 L22: 1.2289 REMARK 3 L33: 3.1683 L12: -0.6438 REMARK 3 L13: -1.2287 L23: 0.9817 REMARK 3 S TENSOR REMARK 3 S11: 0.0295 S12: -0.0630 S13: 0.0121 REMARK 3 S21: 0.1427 S22: -0.0107 S23: -0.0707 REMARK 3 S31: 0.1218 S32: 0.0644 S33: -0.0187 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4NCQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000083037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 OPTICS : TOROIDAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20104 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.64800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB 3GX4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 550 MME, 0.05 M CACL2, 0.1 M REMARK 280 BIS-TRIS, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.93050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.93050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.97500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.37100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.97500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.37100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.93050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.97500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.37100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.93050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.97500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.37100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 55.93050 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 226 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 232 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 CYS A 2 REMARK 465 ASP A 3 REMARK 465 LEU A 4 REMARK 465 PRO A 5 REMARK 465 ALA B 1 REMARK 465 CYS B 2 REMARK 465 ASP B 3 REMARK 465 LEU B 4 REMARK 465 PRO B 5 REMARK 465 CYS B 6 REMARK 465 GLY B 7 REMARK 465 ALA B 117 REMARK 465 ALA C 1 REMARK 465 CYS C 2 REMARK 465 ASP C 3 REMARK 465 LEU C 4 REMARK 465 PRO C 5 REMARK 465 CYS C 6 REMARK 465 GLY C 7 REMARK 465 ALA C 117 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 10 116.38 -164.27 REMARK 500 ASN C 31 109.25 -167.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T6U RELATED DB: PDB REMARK 900 NICKEL SUPEROXIDE DISMUTASE (NISOD) NATIVE AT 1.30 A REMARK 900 RELATED ID: 3G4X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NISOD Y9F MUTANT REMARK 900 RELATED ID: 3G4Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NISOD Y9F MUTANT REMARK 900 RELATED ID: 3G50 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NISOD D3A MUTANT DBREF 4NCQ A 1 117 UNP P80735 SODN_STRCO 15 131 DBREF 4NCQ B 1 117 UNP P80735 SODN_STRCO 15 131 DBREF 4NCQ C 1 117 UNP P80735 SODN_STRCO 15 131 SEQADV 4NCQ ALA A 1 UNP P80735 HIS 15 ENGINEERED MUTATION SEQADV 4NCQ ALA B 1 UNP P80735 HIS 15 ENGINEERED MUTATION SEQADV 4NCQ ALA C 1 UNP P80735 HIS 15 ENGINEERED MUTATION SEQRES 1 A 117 ALA CYS ASP LEU PRO CYS GLY VAL TYR ASP PRO ALA GLN SEQRES 2 A 117 ALA ARG ILE GLU ALA GLU SER VAL LYS ALA VAL GLN GLU SEQRES 3 A 117 LYS MET ALA GLY ASN ASP ASP PRO HIS PHE GLN THR ARG SEQRES 4 A 117 ALA THR VAL ILE LYS GLU GLN ARG ALA GLU LEU ALA LYS SEQRES 5 A 117 HIS HIS VAL SER VAL LEU TRP SER ASP TYR PHE LYS PRO SEQRES 6 A 117 PRO HIS PHE GLU LYS TYR PRO GLU LEU HIS GLN LEU VAL SEQRES 7 A 117 ASN ASP THR LEU LYS ALA LEU SER ALA ALA LYS GLY SER SEQRES 8 A 117 LYS ASP PRO ALA THR GLY GLN LYS ALA LEU ASP TYR ILE SEQRES 9 A 117 ALA GLN ILE ASP LYS ILE PHE TRP GLU THR LYS LYS ALA SEQRES 1 B 117 ALA CYS ASP LEU PRO CYS GLY VAL TYR ASP PRO ALA GLN SEQRES 2 B 117 ALA ARG ILE GLU ALA GLU SER VAL LYS ALA VAL GLN GLU SEQRES 3 B 117 LYS MET ALA GLY ASN ASP ASP PRO HIS PHE GLN THR ARG SEQRES 4 B 117 ALA THR VAL ILE LYS GLU GLN ARG ALA GLU LEU ALA LYS SEQRES 5 B 117 HIS HIS VAL SER VAL LEU TRP SER ASP TYR PHE LYS PRO SEQRES 6 B 117 PRO HIS PHE GLU LYS TYR PRO GLU LEU HIS GLN LEU VAL SEQRES 7 B 117 ASN ASP THR LEU LYS ALA LEU SER ALA ALA LYS GLY SER SEQRES 8 B 117 LYS ASP PRO ALA THR GLY GLN LYS ALA LEU ASP TYR ILE SEQRES 9 B 117 ALA GLN ILE ASP LYS ILE PHE TRP GLU THR LYS LYS ALA SEQRES 1 C 117 ALA CYS ASP LEU PRO CYS GLY VAL TYR ASP PRO ALA GLN SEQRES 2 C 117 ALA ARG ILE GLU ALA GLU SER VAL LYS ALA VAL GLN GLU SEQRES 3 C 117 LYS MET ALA GLY ASN ASP ASP PRO HIS PHE GLN THR ARG SEQRES 4 C 117 ALA THR VAL ILE LYS GLU GLN ARG ALA GLU LEU ALA LYS SEQRES 5 C 117 HIS HIS VAL SER VAL LEU TRP SER ASP TYR PHE LYS PRO SEQRES 6 C 117 PRO HIS PHE GLU LYS TYR PRO GLU LEU HIS GLN LEU VAL SEQRES 7 C 117 ASN ASP THR LEU LYS ALA LEU SER ALA ALA LYS GLY SER SEQRES 8 C 117 LYS ASP PRO ALA THR GLY GLN LYS ALA LEU ASP TYR ILE SEQRES 9 C 117 ALA GLN ILE ASP LYS ILE PHE TRP GLU THR LYS LYS ALA FORMUL 4 HOH *180(H2 O) HELIX 1 1 PRO A 11 ALA A 29 1 19 HELIX 2 2 ASP A 33 TYR A 62 1 30 HELIX 3 3 LYS A 64 TYR A 71 1 8 HELIX 4 4 GLU A 73 GLY A 90 1 18 HELIX 5 5 ASP A 93 LYS A 115 1 23 HELIX 6 6 PRO B 11 GLY B 30 1 20 HELIX 7 7 ASP B 33 TYR B 62 1 30 HELIX 8 8 LYS B 64 TYR B 71 1 8 HELIX 9 9 GLU B 73 GLY B 90 1 18 HELIX 10 10 ASP B 93 LYS B 116 1 24 HELIX 11 11 PRO C 11 ALA C 29 1 19 HELIX 12 12 ASP C 33 TYR C 62 1 30 HELIX 13 13 LYS C 64 TYR C 71 1 8 HELIX 14 14 GLU C 73 GLY C 90 1 18 HELIX 15 15 ASP C 93 LYS C 116 1 24 CISPEP 1 CYS A 6 GLY A 7 0 1.14 CRYST1 59.950 110.742 111.861 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016681 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009030 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008940 0.00000 MASTER 440 0 0 15 0 0 0 6 0 0 0 27 END