HEADER OXIDOREDUCTASE 23-OCT-13 4NB7 TITLE CRYSTAL STRUCTURE OF TWO-DOMAIN LACCASE FROM STREPTOMYCES LIVIDANS TITLE 2 AC1709 IN COMPLEX WITH AZIDE AFTER 180 MIN SOAKING COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER OXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LACCASE; COMPND 5 EC: 1.10.3.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES LIVIDANS; SOURCE 3 ORGANISM_TAXID: 457428; SOURCE 4 STRAIN: TK24; SOURCE 5 GENE: SSPG_00990; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS MULTICOPPER BLUE PROTEIN, TWO-DOMAIN LACCASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GABDULKHAKOV,S.TISCHENKO,L.YUREVICH,A.LISOV,A.LEONTIEVSKY REVDAT 2 15-NOV-17 4NB7 1 REMARK REVDAT 1 29-OCT-14 4NB7 0 JRNL AUTH A.GABDULKHAKOV,S.TISCHENKO,L.YUREVICH,A.LISOV,A.LEONTIEVSKY JRNL TITL CRYSTAL STRUCTURE OF TWO-DOMAIN LACCASE FROM STREPTOMYCES JRNL TITL 2 LIVIDANS AC1709 IN COMPLEX WITH AZIDE AFTER 180 MIN SOAKING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 31553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1578 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3842 - 5.6680 0.99 2959 156 0.1506 0.1664 REMARK 3 2 5.6680 - 4.5003 1.00 2800 147 0.1108 0.1308 REMARK 3 3 4.5003 - 3.9318 1.00 2759 145 0.1142 0.1226 REMARK 3 4 3.9318 - 3.5725 1.00 2729 144 0.1402 0.1568 REMARK 3 5 3.5725 - 3.3165 1.00 2725 143 0.1642 0.2033 REMARK 3 6 3.3165 - 3.1210 1.00 2716 143 0.1969 0.2390 REMARK 3 7 3.1210 - 2.9648 1.00 2681 141 0.2030 0.2394 REMARK 3 8 2.9648 - 2.8357 1.00 2709 143 0.2305 0.2643 REMARK 3 9 2.8357 - 2.7266 1.00 2677 141 0.2810 0.3012 REMARK 3 10 2.7266 - 2.6325 1.00 2668 140 0.2854 0.3294 REMARK 3 11 2.6325 - 2.5502 0.95 2552 135 0.3325 0.2929 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2353 REMARK 3 ANGLE : 1.237 3135 REMARK 3 CHIRALITY : 0.046 311 REMARK 3 PLANARITY : 0.006 400 REMARK 3 DIHEDRAL : 17.391 893 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NB7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31563 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4GYB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 31%(V/V) PEG MONOMETHYL ETHER 550, REMARK 280 0.1M NACL, 0.1M GLYCINE, PH 9.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 88.75500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.75500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 88.75500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.75500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 88.75500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 88.75500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 88.75500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 88.75500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 88.75500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 88.75500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 88.75500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 88.75500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 88.75500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 88.75500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 88.75500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 88.75500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 88.75500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 88.75500 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 44.37750 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 133.13250 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 133.13250 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 44.37750 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 44.37750 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 44.37750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 133.13250 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 133.13250 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 44.37750 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 133.13250 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 44.37750 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 133.13250 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 44.37750 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 133.13250 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 133.13250 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 133.13250 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 44.37750 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 133.13250 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 44.37750 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 44.37750 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 44.37750 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 133.13250 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 133.13250 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 44.37750 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 44.37750 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 133.13250 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 133.13250 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 133.13250 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 133.13250 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 44.37750 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 133.13250 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 44.37750 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 133.13250 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 44.37750 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 44.37750 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 44.37750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 578 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 5 REMARK 465 PHE A 6 REMARK 465 ASN A 7 REMARK 465 ARG A 8 REMARK 465 ARG A 9 REMARK 465 VAL A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 THR A 19 REMARK 465 SER A 20 REMARK 465 LEU A 21 REMARK 465 SER A 22 REMARK 465 ILE A 23 REMARK 465 ALA A 24 REMARK 465 PRO A 25 REMARK 465 GLU A 26 REMARK 465 VAL A 27 REMARK 465 ALA A 28 REMARK 465 GLY A 29 REMARK 465 ALA A 30 REMARK 465 ALA A 31 REMARK 465 PRO A 32 REMARK 465 ALA A 33 REMARK 465 ALA A 34 REMARK 465 LYS A 35 REMARK 465 PRO A 316 REMARK 465 HIS A 317 REMARK 465 GLU A 318 REMARK 465 HIS A 319 REMARK 465 GLY A 320 REMARK 465 GLY A 321 REMARK 465 ALA A 322 REMARK 465 THR A 323 REMARK 465 ALA A 324 REMARK 465 LYS A 325 REMARK 465 SER A 326 REMARK 465 GLY A 327 REMARK 465 GLU A 328 REMARK 465 SER A 329 REMARK 465 GLY A 330 REMARK 465 GLU A 331 REMARK 465 PRO A 332 REMARK 465 THR A 333 REMARK 465 GLY A 334 REMARK 465 GLY A 335 REMARK 465 ALA A 336 REMARK 465 ALA A 337 REMARK 465 ALA A 338 REMARK 465 HIS A 339 REMARK 465 GLU A 340 REMARK 465 HIS A 341 REMARK 465 GLU A 342 REMARK 465 HIS A 343 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 37 15.89 -145.35 REMARK 500 THR A 38 -21.80 -160.00 REMARK 500 ASP A 197 -120.98 46.89 REMARK 500 MET A 198 30.08 -99.83 REMARK 500 ASN A 243 -159.63 -137.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 401 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 293 ND1 REMARK 620 2 HIS A 231 ND1 107.6 REMARK 620 3 CYS A 288 SG 118.0 132.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 402 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 289 NE2 REMARK 620 2 HOH A 531 O 77.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 403 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 236 NE2 REMARK 620 2 HIS A 287 NE2 109.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 7PE A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 418 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GYB RELATED DB: PDB REMARK 900 TWO-DOMAIN LACCASE FROM STREPTOMYCES LIVIDANS AT 2.4 A RESOLUTION REMARK 900 AC1709 REMARK 900 RELATED ID: 4NAJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TWO-DOMAIN LACCASE FROM STREPTOMYCES LIVIDANS REMARK 900 AC1709 IN COMPLEX WITH AZIDE AFTER 90 MIN SOAKING DBREF 4NB7 A 1 343 UNP D6EFA0 D6EFA0_STRLI 1 343 SEQRES 1 A 343 MET ASP ARG ARG GLY PHE ASN ARG ARG VAL LEU LEU GLY SEQRES 2 A 343 GLY ALA ALA ALA ALA THR SER LEU SER ILE ALA PRO GLU SEQRES 3 A 343 VAL ALA GLY ALA ALA PRO ALA ALA LYS GLY ILE THR ALA SEQRES 4 A 343 ARG THR ALA PRO ALA GLY GLY GLU VAL ARG HIS LEU LYS SEQRES 5 A 343 MET TYR ALA GLU LYS LEU ALA ASP GLY GLN MET GLY TYR SEQRES 6 A 343 GLY PHE GLU LYS GLY LYS ALA SER VAL PRO GLY PRO LEU SEQRES 7 A 343 ILE GLU VAL ASN GLU GLY ASP THR LEU HIS ILE GLU PHE SEQRES 8 A 343 THR ASN THR MET ASP VAL ARG ALA SER LEU HIS VAL HIS SEQRES 9 A 343 GLY LEU ASP TYR GLU ILE SER SER ASP GLY THR ALA MET SEQRES 10 A 343 ASN LYS SER ASP VAL GLU PRO GLY GLY THR ARG THR TYR SEQRES 11 A 343 THR TRP ARG THR HIS LYS PRO GLY ARG ARG ASP ASP GLY SEQRES 12 A 343 THR TRP ARG PRO GLY SER ALA GLY TYR TRP HIS TYR HIS SEQRES 13 A 343 ASP HIS VAL VAL GLY THR GLU HIS GLY THR GLY GLY ILE SEQRES 14 A 343 ARG ASN GLY LEU TYR GLY PRO VAL ILE VAL ARG ARG LYS SEQRES 15 A 343 GLY ASP VAL LEU PRO ASP ALA THR HIS THR ILE VAL PHE SEQRES 16 A 343 ASN ASP MET THR ILE ASN ASN ARG LYS PRO HIS THR GLY SEQRES 17 A 343 PRO ASP PHE GLU ALA THR VAL GLY ASP ARG VAL GLU ILE SEQRES 18 A 343 VAL MET ILE THR HIS GLY GLU TYR TYR HIS THR PHE HIS SEQRES 19 A 343 MET HIS GLY HIS ARG TRP ALA ASP ASN ARG THR GLY ILE SEQRES 20 A 343 LEU THR GLY PRO ASP ASP PRO SER ARG VAL ILE ASP ASN SEQRES 21 A 343 LYS ILE THR GLY PRO ALA ASP SER PHE GLY PHE GLN ILE SEQRES 22 A 343 ILE ALA GLY GLU GLY VAL GLY ALA GLY ALA TRP MET TYR SEQRES 23 A 343 HIS CYS HIS VAL GLN SER HIS SER ASP MET GLY MET VAL SEQRES 24 A 343 GLY LEU PHE LEU VAL LYS LYS PRO ASP GLY THR ILE PRO SEQRES 25 A 343 GLY TYR GLU PRO HIS GLU HIS GLY GLY ALA THR ALA LYS SEQRES 26 A 343 SER GLY GLU SER GLY GLU PRO THR GLY GLY ALA ALA ALA SEQRES 27 A 343 HIS GLU HIS GLU HIS HET CU A 401 1 HET CU A 402 1 HET CU A 403 1 HET CU A 404 1 HET AZI A 405 3 HET AZI A 406 3 HET AZI A 407 3 HET AZI A 408 3 HET AZI A 409 3 HET AZI A 410 3 HET PG4 A 411 13 HET PE5 A 412 27 HET P6G A 413 19 HET GOL A 414 6 HET GOL A 415 6 HET 7PE A 416 21 HET 1PE A 417 16 HET 1PE A 418 16 HETNAM CU COPPER (II) ION HETNAM AZI AZIDE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL HETNAM P6G HEXAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM 7PE 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY) HETNAM 2 7PE ETHOXY)ETHANOL HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN PE5 2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETSYN 2 PE5 ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, POLYETHYLENE HETSYN 3 PE5 GLYCOL PEG400 HETSYN P6G POLYETHYLENE GLYCOL PEG400 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 7PE POLYETHYLENE GLYCOL FRAGMENT HETSYN 1PE PEG400 FORMUL 2 CU 4(CU 2+) FORMUL 6 AZI 6(N3 1-) FORMUL 12 PG4 C8 H18 O5 FORMUL 13 PE5 C18 H38 O9 FORMUL 14 P6G C12 H26 O7 FORMUL 15 GOL 2(C3 H8 O3) FORMUL 17 7PE C14 H30 O7 FORMUL 18 1PE 2(C10 H22 O6) FORMUL 20 HOH *88(H2 O) HELIX 1 1 GLU A 109 ASP A 113 5 5 HELIX 2 2 GLY A 165 GLY A 172 1 8 HELIX 3 3 VAL A 290 MET A 296 1 7 SHEET 1 A 4 MET A 63 GLY A 66 0 SHEET 2 A 4 VAL A 48 LYS A 57 -1 N TYR A 54 O GLY A 66 SHEET 3 A 4 THR A 86 ASN A 93 1 O THR A 86 N ARG A 49 SHEET 4 A 4 THR A 127 ARG A 133 -1 O ARG A 128 N PHE A 91 SHEET 1 B 4 ILE A 79 ASN A 82 0 SHEET 2 B 4 TYR A 174 ARG A 180 1 O ILE A 178 N ILE A 79 SHEET 3 B 4 GLY A 151 HIS A 156 -1 N TRP A 153 O VAL A 177 SHEET 4 B 4 HIS A 102 VAL A 103 -1 N HIS A 102 O HIS A 156 SHEET 1 C 2 GLY A 138 ARG A 139 0 SHEET 2 C 2 TRP A 145 ARG A 146 -1 O ARG A 146 N GLY A 138 SHEET 1 D 4 THR A 199 ILE A 200 0 SHEET 2 D 4 ALA A 189 ASN A 196 -1 N ASN A 196 O THR A 199 SHEET 3 D 4 ARG A 218 HIS A 226 1 O GLU A 220 N ALA A 189 SHEET 4 D 4 SER A 268 ILE A 274 -1 O PHE A 269 N MET A 223 SHEET 1 E 5 ASP A 210 THR A 214 0 SHEET 2 E 5 VAL A 299 LYS A 305 1 O LEU A 303 N PHE A 211 SHEET 3 E 5 GLY A 282 CYS A 288 -1 N TRP A 284 O PHE A 302 SHEET 4 E 5 HIS A 231 MET A 235 -1 N HIS A 234 O HIS A 287 SHEET 5 E 5 ASN A 260 THR A 263 -1 O THR A 263 N HIS A 231 SHEET 1 F 2 TRP A 240 ALA A 241 0 SHEET 2 F 2 VAL A 257 ILE A 258 -1 O ILE A 258 N TRP A 240 LINK ND1 HIS A 293 CU CU A 401 1555 1555 1.93 LINK NE2 HIS A 234 CU CU A 404 1555 1555 1.99 LINK ND1 HIS A 231 CU CU A 401 1555 1555 2.06 LINK NE2 HIS A 289 CU CU A 402 1555 1555 2.08 LINK NE2 HIS A 236 CU CU A 403 1555 1555 2.09 LINK SG CYS A 288 CU CU A 401 1555 1555 2.14 LINK NE2 HIS A 287 CU CU A 403 1555 1555 2.27 LINK CU CU A 402 O HOH A 531 1555 1555 2.62 CISPEP 1 GLY A 45 GLY A 46 0 4.02 CISPEP 2 VAL A 74 PRO A 75 0 -1.48 CISPEP 3 GLY A 208 PRO A 209 0 5.23 SITE 1 AC1 4 HIS A 231 CYS A 288 HIS A 293 MET A 298 SITE 1 AC2 4 HIS A 104 HIS A 156 HIS A 289 HOH A 531 SITE 1 AC3 4 HIS A 158 HIS A 236 HIS A 287 HOH A 531 SITE 1 AC4 5 HIS A 102 HIS A 234 HIS A 236 AZI A 409 SITE 2 AC4 5 HOH A 531 SITE 1 AC5 3 TYR A 229 TYR A 230 HIS A 293 SITE 1 AC6 7 LYS A 69 GLY A 70 HIS A 191 GLU A 212 SITE 2 AC6 7 ALA A 213 ASP A 217 VAL A 219 SITE 1 AC7 8 TRP A 240 ALA A 241 ASP A 242 ASN A 243 SITE 2 AC7 8 ARG A 256 LYS A 261 PHE A 269 GLY A 270 SITE 1 AC8 7 GLY A 148 ALA A 150 ARG A 181 ARG A 244 SITE 2 AC8 7 VAL A 257 HOH A 517 HOH A 550 SITE 1 AC9 11 HIS A 102 VAL A 103 TYR A 108 HIS A 234 SITE 2 AC9 11 MET A 235 HIS A 236 GLY A 237 HIS A 238 SITE 3 AC9 11 ASP A 259 CU A 404 HOH A 540 SITE 1 BC1 4 HIS A 50 LYS A 52 GLU A 90 HOH A 588 SITE 1 BC2 3 GLU A 109 ARG A 133 GLY A 278 SITE 1 BC3 4 ARG A 49 GLU A 68 LEU A 78 GLU A 80 SITE 1 BC4 7 ARG A 40 LYS A 69 PRO A 187 ASP A 188 SITE 2 BC4 7 VAL A 215 GLY A 216 ASP A 217 SITE 1 BC5 1 GLU A 47 SITE 1 BC6 8 ASP A 60 ARG A 170 ASN A 171 ASP A 197 SITE 2 BC6 8 ASN A 202 LYS A 204 1PE A 417 HOH A 546 SITE 1 BC7 7 GLN A 62 SER A 73 VAL A 74 PRO A 75 SITE 2 BC7 7 ASN A 202 7PE A 416 HOH A 523 SITE 1 BC8 3 LYS A 136 ARG A 139 ARG A 146 CRYST1 177.510 177.510 177.510 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005633 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005633 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005633 0.00000 MASTER 492 0 18 3 21 0 26 6 0 0 0 27 END