HEADER PROTEIN BINDING/PROTEIN FIBRIL 24-SEP-13 4MVI TITLE CRYSTAL STRUCTURE OF AN ENGINEERED LIPOCALIN (ANTICALIN US7) IN TITLE 2 COMPLEX WITH THE ALZHEIMER AMYLOID PEPTIDE ABETA(1-40) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTROPHIL GELATINASE-ASSOCIATED LIPOCALIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 21-198; COMPND 5 SYNONYM: NGAL, 25 KDA ALPHA-2-MICROGLOBULIN-RELATED SUBUNIT OF MMP-9, COMPND 6 LIPOCALIN-2, ONCOGENE 24P3, SIDEROCALIN LCN2, P25; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: BETA-AMYLOID PROTEIN 40; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 672-711; COMPND 13 SYNONYM: BETA-APP40; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ENGINEERED VARIANT US7, HNL, LCN2, LCN2 (NGAL_HUMAN), NGAL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TG1(F-); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNGAL98-US7; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 OTHER_DETAILS: THE ABETA(1-40) PEPTIDE WAS SYNTHESIZED WITHOUT SOURCE 17 MODIFICATIONS. KEYWDS BETA-BARREL, ENGINEERED LIPOCALIN, BINDING PROTEIN, BINDING PROTEIN- KEYWDS 2 PROTEIN FIBRIL COMPLEX, PROTEIN BINDING-PROTEIN FIBRIL COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.EICHINGER,A.SKERRA REVDAT 3 15-JUN-16 4MVI 1 JRNL REVDAT 2 20-APR-16 4MVI 1 JRNL REVDAT 1 12-AUG-15 4MVI 0 JRNL AUTH S.RAUTH,D.HINZ,M.BORGER,M.UHRIG,M.MAYHAUS,M.RIEMENSCHNEIDER, JRNL AUTH 2 A.SKERRA JRNL TITL HIGH-AFFINITY ANTICALINS WITH AGGREGATION-BLOCKING ACTIVITY JRNL TITL 2 DIRECTED AGAINST THE ALZHEIMER BETA-AMYLOID PEPTIDE. JRNL REF BIOCHEM.J. V. 473 1563 2016 JRNL REFN ISSN 0264-6021 JRNL PMID 27029347 JRNL DOI 10.1042/BCJ20160114 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1020 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1256 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1496 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.78000 REMARK 3 B22 (A**2) : -1.27000 REMARK 3 B33 (A**2) : -1.51000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.918 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1534 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2072 ; 1.960 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 183 ; 6.906 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;39.264 ;23.973 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 270 ;16.002 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;16.400 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 222 ; 0.160 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1164 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): -18.5917 2.3657 -7.6064 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: 0.0081 REMARK 3 T33: 0.0085 T12: 0.0069 REMARK 3 T13: 0.0017 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.3846 L22: 0.5464 REMARK 3 L33: 0.6808 L12: -0.0898 REMARK 3 L13: 0.2134 L23: 0.0655 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: -0.0122 S13: 0.0027 REMARK 3 S21: 0.0124 S22: -0.0146 S23: 0.0425 REMARK 3 S31: -0.0007 S32: 0.0372 S33: 0.0389 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 28 REMARK 3 ORIGIN FOR THE GROUP (A): -26.3319 -1.0883 -1.8137 REMARK 3 T TENSOR REMARK 3 T11: 0.0431 T22: 0.0664 REMARK 3 T33: 0.0466 T12: 0.0353 REMARK 3 T13: 0.0416 T23: 0.0460 REMARK 3 L TENSOR REMARK 3 L11: 4.0692 L22: 1.7684 REMARK 3 L33: 2.6289 L12: 1.3735 REMARK 3 L13: 3.0617 L23: 0.3854 REMARK 3 S TENSOR REMARK 3 S11: 0.0516 S12: -0.3511 S13: -0.1032 REMARK 3 S21: 0.1451 S22: 0.0484 S23: 0.0606 REMARK 3 S31: -0.0272 S32: -0.3323 S33: -0.0999 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-13. REMARK 100 THE RCSB ID CODE IS RCSB082417. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20073 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 42.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.24500 REMARK 200 R SYM FOR SHELL (I) : 0.24500 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4MVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 27.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % (W/V) PEG 4000, 100 MM SODIUM REMARK 280 ACETATE, PH 5.25, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.47500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.61500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.46500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.61500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.47500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.46500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 SER A 5 REMARK 465 GLY A 178 REMARK 465 SER A 179 REMARK 465 ALA A 180 REMARK 465 TRP A 181 REMARK 465 SER A 182 REMARK 465 HIS A 183 REMARK 465 PRO A 184 REMARK 465 GLN A 185 REMARK 465 PHE A 186 REMARK 465 GLU A 187 REMARK 465 LYS A 188 REMARK 465 ASP B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 PHE B 4 REMARK 465 ARG B 5 REMARK 465 HIS B 6 REMARK 465 ASP B 7 REMARK 465 SER B 8 REMARK 465 GLY B 9 REMARK 465 TYR B 10 REMARK 465 GLU B 11 REMARK 465 VAL B 12 REMARK 465 HIS B 13 REMARK 465 HIS B 14 REMARK 465 GLN B 15 REMARK 465 GLY B 29 REMARK 465 ALA B 30 REMARK 465 ILE B 31 REMARK 465 ILE B 32 REMARK 465 GLY B 33 REMARK 465 LEU B 34 REMARK 465 MET B 35 REMARK 465 VAL B 36 REMARK 465 GLY B 37 REMARK 465 GLY B 38 REMARK 465 VAL B 39 REMARK 465 VAL B 40 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 118 CG HIS A 118 CD2 0.063 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 41 -71.91 -56.12 REMARK 500 LEU A 42 90.46 68.41 REMARK 500 SER A 99 107.25 -49.81 REMARK 500 PRO A 101 -75.56 -12.22 REMARK 500 TYR A 115 -42.86 75.01 REMARK 500 GLN A 117 -60.55 -137.27 REMARK 500 CYS A 175 -37.27 70.92 REMARK 500 GLU B 22 -143.35 65.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 44 23.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MVK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ENGINEERED LIPOCALIN (ANTICALIN REMARK 900 US7) IN COMPLEX WITH THE ALZHEIMER AMYLOID PEPTIDE FRAGMENT REMARK 900 VFFAED REMARK 900 RELATED ID: 4MVL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ENGINEERED LIPOCALIN (ANTICALIN REMARK 900 H1GA) IN COMPLEX WITH THE ALZHEIMER AMYLOID PEPTIDE ABETA1- REMARK 900 40 DBREF 4MVI A 1 178 UNP P80188 NGAL_HUMAN 21 198 DBREF 4MVI B 1 40 UNP P05067 A4_HUMAN 672 711 SEQADV 4MVI HIS A 28 UNP P80188 GLN 48 ENGINEERED MUTATION SEQADV 4MVI VAL A 36 UNP P80188 LEU 56 ENGINEERED MUTATION SEQADV 4MVI LYS A 40 UNP P80188 ALA 60 ENGINEERED MUTATION SEQADV 4MVI SER A 41 UNP P80188 ILE 61 ENGINEERED MUTATION SEQADV 4MVI TRP A 49 UNP P80188 GLN 69 ENGINEERED MUTATION SEQADV 4MVI GLY A 70 UNP P80188 LEU 90 ENGINEERED MUTATION SEQADV 4MVI GLY A 72 UNP P80188 ARG 92 ENGINEERED MUTATION SEQADV 4MVI THR A 73 UNP P80188 LYS 93 ENGINEERED MUTATION SEQADV 4MVI HIS A 77 UNP P80188 ASP 97 ENGINEERED MUTATION SEQADV 4MVI LYS A 79 UNP P80188 TRP 99 ENGINEERED MUTATION SEQADV 4MVI SER A 87 UNP P80188 CYS 107 ENGINEERED MUTATION SEQADV 4MVI ARG A 96 UNP P80188 ASN 116 ENGINEERED MUTATION SEQADV 4MVI ARG A 100 UNP P80188 TYR 120 ENGINEERED MUTATION SEQADV 4MVI ARG A 103 UNP P80188 LEU 123 ENGINEERED MUTATION SEQADV 4MVI ALA A 106 UNP P80188 TYR 126 ENGINEERED MUTATION SEQADV 4MVI VAL A 125 UNP P80188 LYS 145 ENGINEERED MUTATION SEQADV 4MVI GLN A 127 UNP P80188 SER 147 ENGINEERED MUTATION SEQADV 4MVI SER A 132 UNP P80188 TYR 152 ENGINEERED MUTATION SEQADV 4MVI ASN A 134 UNP P80188 LYS 154 ENGINEERED MUTATION SEQADV 4MVI SER A 179 UNP P80188 EXPRESSION TAG SEQADV 4MVI ALA A 180 UNP P80188 EXPRESSION TAG SEQADV 4MVI TRP A 181 UNP P80188 EXPRESSION TAG SEQADV 4MVI SER A 182 UNP P80188 EXPRESSION TAG SEQADV 4MVI HIS A 183 UNP P80188 EXPRESSION TAG SEQADV 4MVI PRO A 184 UNP P80188 EXPRESSION TAG SEQADV 4MVI GLN A 185 UNP P80188 EXPRESSION TAG SEQADV 4MVI PHE A 186 UNP P80188 EXPRESSION TAG SEQADV 4MVI GLU A 187 UNP P80188 EXPRESSION TAG SEQADV 4MVI LYS A 188 UNP P80188 EXPRESSION TAG SEQRES 1 A 188 GLN ASP SER THR SER ASP LEU ILE PRO ALA PRO PRO LEU SEQRES 2 A 188 SER LYS VAL PRO LEU GLN GLN ASN PHE GLN ASP ASN GLN SEQRES 3 A 188 PHE HIS GLY LYS TRP TYR VAL VAL GLY VAL ALA GLY ASN SEQRES 4 A 188 LYS SER LEU ARG GLU ASP LYS ASP PRO TRP LYS MET TYR SEQRES 5 A 188 ALA THR ILE TYR GLU LEU LYS GLU ASP LYS SER TYR ASN SEQRES 6 A 188 VAL THR SER VAL GLY PHE GLY THR LYS LYS CYS HIS TYR SEQRES 7 A 188 LYS ILE ARG THR PHE VAL PRO GLY SER GLN PRO GLY GLU SEQRES 8 A 188 PHE THR LEU GLY ARG ILE LYS SER ARG PRO GLY ARG THR SEQRES 9 A 188 SER ALA LEU VAL ARG VAL VAL SER THR ASN TYR ASN GLN SEQRES 10 A 188 HIS ALA MET VAL PHE PHE LYS VAL VAL GLN GLN ASN ARG SEQRES 11 A 188 GLU SER PHE ASN ILE THR LEU TYR GLY ARG THR LYS GLU SEQRES 12 A 188 LEU THR SER GLU LEU LYS GLU ASN PHE ILE ARG PHE SER SEQRES 13 A 188 LYS SER LEU GLY LEU PRO GLU ASN HIS ILE VAL PHE PRO SEQRES 14 A 188 VAL PRO ILE ASP GLN CYS ILE ASP GLY SER ALA TRP SER SEQRES 15 A 188 HIS PRO GLN PHE GLU LYS SEQRES 1 B 40 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 B 40 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER SEQRES 3 B 40 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 B 40 VAL FORMUL 3 HOH *81(H2 O) HELIX 1 1 PRO A 12 VAL A 16 5 5 HELIX 2 2 GLN A 23 HIS A 28 1 6 HELIX 3 3 THR A 145 LEU A 159 1 15 HELIX 4 4 PRO A 162 ASN A 164 5 3 SHEET 1 A10 ILE A 166 VAL A 167 0 SHEET 2 A10 GLY A 29 GLY A 38 -1 N VAL A 36 O VAL A 167 SHEET 3 A10 ARG A 130 GLY A 139 -1 O GLY A 139 N TYR A 32 SHEET 4 A10 HIS A 118 GLN A 127 -1 N VAL A 121 O THR A 136 SHEET 5 A10 THR A 104 THR A 113 -1 N ARG A 109 O PHE A 122 SHEET 6 A10 GLU A 91 LEU A 94 -1 N PHE A 92 O VAL A 108 SHEET 7 A10 CYS A 76 PRO A 85 -1 N VAL A 84 O THR A 93 SHEET 8 A10 TYR A 64 PHE A 71 -1 N VAL A 66 O ARG A 81 SHEET 9 A10 ALA A 53 LEU A 58 -1 N ILE A 55 O THR A 67 SHEET 10 A10 GLY A 29 GLY A 38 -1 N GLY A 29 O TYR A 56 SSBOND 1 CYS A 76 CYS A 175 1555 1555 2.05 CRYST1 48.950 58.930 61.230 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020429 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016332 0.00000 MASTER 395 0 0 4 10 0 0 6 0 0 0 19 END