HEADER ISOMERASE 23-SEP-13 4MVA TITLE 1.43 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF TRIOSEPHOSPHATE TITLE 2 ISOMERASE (TPIA) FROM ESCHERICHIA COLI IN COMPLEX WITH ACETYL TITLE 3 PHOSPHATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TRIOSEPHOSPHATE ISOMERASE (TPIA); COMPND 5 SYNONYM: TIM, TRIOSE-PHOSPHATE ISOMERASE; COMPND 6 EC: 5.3.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 595496; SOURCE 4 STRAIN: K-12 SUBSTR. MG1655; SOURCE 5 GENE: BWG_3588, TPIA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, CSGID, TIM BETA/ALPHA BARREL, TRIOSE-PHOSPHATE ISOMERASE KEYWDS 4 ACTIVITY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,M.L.KUHN,I.DUBROVSKA,J.WINSOR,L.SHUVALOVA,S.GRIMSHAW, AUTHOR 2 K.KWON,W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS AUTHOR 3 DISEASES (CSGID) REVDAT 3 15-NOV-17 4MVA 1 REMARK REVDAT 2 30-APR-14 4MVA 1 JRNL REVDAT 1 16-APR-14 4MVA 0 JRNL AUTH M.L.KUHN,B.ZEMAITAITIS,L.I.HU,A.SAHU,D.SORENSEN,G.MINASOV, JRNL AUTH 2 B.P.LIMA,M.SCHOLLE,M.MRKSICH,W.F.ANDERSON,B.W.GIBSON, JRNL AUTH 3 B.SCHILLING,A.J.WOLFE JRNL TITL STRUCTURAL, KINETIC AND PROTEOMIC CHARACTERIZATION OF ACETYL JRNL TITL 2 PHOSPHATE-DEPENDENT BACTERIAL PROTEIN ACETYLATION. JRNL REF PLOS ONE V. 9 94816 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24756028 JRNL DOI 10.1371/JOURNAL.PONE.0094816 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0046 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 83946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4433 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6138 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 326 REMARK 3 BIN FREE R VALUE : 0.2110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3780 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 837 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : 0.66000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.057 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.842 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4429 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4304 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6035 ; 1.471 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9947 ; 0.762 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 616 ; 3.588 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;36.623 ;25.543 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 779 ; 9.701 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;10.242 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 667 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5319 ; 0.017 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 961 ; 0.016 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2344 ; 1.261 ; 1.210 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2343 ; 1.258 ; 1.208 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3000 ; 2.043 ; 1.809 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3001 ; 2.044 ; 1.811 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2085 ; 2.084 ; 1.456 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2085 ; 2.084 ; 1.456 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3036 ; 3.129 ; 2.082 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5831 ; 6.988 ;12.896 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5178 ; 6.384 ;10.660 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1178 -22.7517 17.8125 REMARK 3 T TENSOR REMARK 3 T11: 0.0175 T22: 0.0171 REMARK 3 T33: 0.0144 T12: 0.0027 REMARK 3 T13: -0.0095 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.2928 L22: 0.5839 REMARK 3 L33: 0.2895 L12: 0.2313 REMARK 3 L13: -0.0967 L23: 0.0440 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: -0.0404 S13: -0.0063 REMARK 3 S21: 0.0186 S22: 0.0180 S23: 0.0115 REMARK 3 S31: 0.0477 S32: 0.0026 S33: -0.0142 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7196 -35.8764 23.8375 REMARK 3 T TENSOR REMARK 3 T11: 0.0541 T22: 0.0098 REMARK 3 T33: 0.0158 T12: -0.0051 REMARK 3 T13: -0.0037 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.6055 L22: 0.6608 REMARK 3 L33: 0.7388 L12: -0.1188 REMARK 3 L13: -0.1856 L23: 0.0754 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: -0.0574 S13: -0.0720 REMARK 3 S21: 0.0685 S22: 0.0293 S23: 0.0158 REMARK 3 S31: 0.1525 S32: -0.0278 S33: -0.0248 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 142 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4600 -2.8608 14.5349 REMARK 3 T TENSOR REMARK 3 T11: 0.0097 T22: 0.0111 REMARK 3 T33: 0.0117 T12: 0.0009 REMARK 3 T13: 0.0014 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.5084 L22: 0.7393 REMARK 3 L33: 0.3143 L12: 0.1259 REMARK 3 L13: -0.0623 L23: 0.1841 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: -0.0308 S13: 0.0211 REMARK 3 S21: -0.0394 S22: 0.0458 S23: 0.0024 REMARK 3 S31: -0.0168 S32: 0.0383 S33: -0.0450 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 143 B 255 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1826 9.0532 18.6170 REMARK 3 T TENSOR REMARK 3 T11: 0.0485 T22: 0.0409 REMARK 3 T33: 0.0553 T12: -0.0149 REMARK 3 T13: 0.0170 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 1.0619 L22: 0.8804 REMARK 3 L33: 0.7399 L12: -0.2577 REMARK 3 L13: 0.4857 L23: 0.0715 REMARK 3 S TENSOR REMARK 3 S11: -0.0475 S12: -0.0518 S13: 0.1123 REMARK 3 S21: 0.0180 S22: 0.0463 S23: -0.0826 REMARK 3 S31: -0.1311 S32: 0.1015 S33: 0.0013 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4MVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082409. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88659 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1TRE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 7.4MG/ML, 0.15M SODIUM REMARK 280 CLORIDE, 0.01M TRIS-HCL PH 8.3; SCREEN: CLASSICS II (F11), 0.2M REMARK 280 SODIUM CHLORIDE, 0.1M BIS-TRIS PH 6.5, 25% (W/V) PEG 3350, 10MM REMARK 280 ACP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.26750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.16800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.76450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.16800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.26750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.76450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 GLY B -14 REMARK 465 VAL B -13 REMARK 465 ASP B -12 REMARK 465 LEU B -11 REMARK 465 GLY B -10 REMARK 465 THR B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 ALA B 255 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 11 -146.06 52.75 REMARK 500 ASN A 214 -142.71 -154.31 REMARK 500 LYS B 11 -146.66 52.47 REMARK 500 GLN B 89 -47.32 -134.98 REMARK 500 THR B 100 -70.53 -84.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UVW A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UVW B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K6A RELATED DB: PDB REMARK 900 REVISED CRYSTAL STRUCTURE OF APO-FORM OF TRIOSEPHOSPHATE ISOMERASE REMARK 900 (TPIA) FROM ESCHERICHIA COLI AT 1.8 ANGSTROM RESOLUTION. REMARK 900 RELATED ID: IDP91829 RELATED DB: TARGETTRACK DBREF 4MVA A 1 255 UNP C5A086 C5A086_ECOBW 1 255 DBREF 4MVA B 1 255 UNP C5A086 C5A086_ECOBW 1 255 SEQADV 4MVA MET A -23 UNP C5A086 EXPRESSION TAG SEQADV 4MVA HIS A -22 UNP C5A086 EXPRESSION TAG SEQADV 4MVA HIS A -21 UNP C5A086 EXPRESSION TAG SEQADV 4MVA HIS A -20 UNP C5A086 EXPRESSION TAG SEQADV 4MVA HIS A -19 UNP C5A086 EXPRESSION TAG SEQADV 4MVA HIS A -18 UNP C5A086 EXPRESSION TAG SEQADV 4MVA HIS A -17 UNP C5A086 EXPRESSION TAG SEQADV 4MVA SER A -16 UNP C5A086 EXPRESSION TAG SEQADV 4MVA SER A -15 UNP C5A086 EXPRESSION TAG SEQADV 4MVA GLY A -14 UNP C5A086 EXPRESSION TAG SEQADV 4MVA VAL A -13 UNP C5A086 EXPRESSION TAG SEQADV 4MVA ASP A -12 UNP C5A086 EXPRESSION TAG SEQADV 4MVA LEU A -11 UNP C5A086 EXPRESSION TAG SEQADV 4MVA GLY A -10 UNP C5A086 EXPRESSION TAG SEQADV 4MVA THR A -9 UNP C5A086 EXPRESSION TAG SEQADV 4MVA GLU A -8 UNP C5A086 EXPRESSION TAG SEQADV 4MVA ASN A -7 UNP C5A086 EXPRESSION TAG SEQADV 4MVA LEU A -6 UNP C5A086 EXPRESSION TAG SEQADV 4MVA TYR A -5 UNP C5A086 EXPRESSION TAG SEQADV 4MVA PHE A -4 UNP C5A086 EXPRESSION TAG SEQADV 4MVA GLN A -3 UNP C5A086 EXPRESSION TAG SEQADV 4MVA SER A -2 UNP C5A086 EXPRESSION TAG SEQADV 4MVA ASN A -1 UNP C5A086 EXPRESSION TAG SEQADV 4MVA ALA A 0 UNP C5A086 EXPRESSION TAG SEQADV 4MVA MET B -23 UNP C5A086 EXPRESSION TAG SEQADV 4MVA HIS B -22 UNP C5A086 EXPRESSION TAG SEQADV 4MVA HIS B -21 UNP C5A086 EXPRESSION TAG SEQADV 4MVA HIS B -20 UNP C5A086 EXPRESSION TAG SEQADV 4MVA HIS B -19 UNP C5A086 EXPRESSION TAG SEQADV 4MVA HIS B -18 UNP C5A086 EXPRESSION TAG SEQADV 4MVA HIS B -17 UNP C5A086 EXPRESSION TAG SEQADV 4MVA SER B -16 UNP C5A086 EXPRESSION TAG SEQADV 4MVA SER B -15 UNP C5A086 EXPRESSION TAG SEQADV 4MVA GLY B -14 UNP C5A086 EXPRESSION TAG SEQADV 4MVA VAL B -13 UNP C5A086 EXPRESSION TAG SEQADV 4MVA ASP B -12 UNP C5A086 EXPRESSION TAG SEQADV 4MVA LEU B -11 UNP C5A086 EXPRESSION TAG SEQADV 4MVA GLY B -10 UNP C5A086 EXPRESSION TAG SEQADV 4MVA THR B -9 UNP C5A086 EXPRESSION TAG SEQADV 4MVA GLU B -8 UNP C5A086 EXPRESSION TAG SEQADV 4MVA ASN B -7 UNP C5A086 EXPRESSION TAG SEQADV 4MVA LEU B -6 UNP C5A086 EXPRESSION TAG SEQADV 4MVA TYR B -5 UNP C5A086 EXPRESSION TAG SEQADV 4MVA PHE B -4 UNP C5A086 EXPRESSION TAG SEQADV 4MVA GLN B -3 UNP C5A086 EXPRESSION TAG SEQADV 4MVA SER B -2 UNP C5A086 EXPRESSION TAG SEQADV 4MVA ASN B -1 UNP C5A086 EXPRESSION TAG SEQADV 4MVA ALA B 0 UNP C5A086 EXPRESSION TAG SEQRES 1 A 279 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 279 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET ARG SEQRES 3 A 279 HIS PRO LEU VAL MET GLY ASN TRP LYS LEU ASN GLY SER SEQRES 4 A 279 ARG HIS MET VAL HIS GLU LEU VAL SER ASN LEU ARG LYS SEQRES 5 A 279 GLU LEU ALA GLY VAL ALA GLY CYS ALA VAL ALA ILE ALA SEQRES 6 A 279 PRO PRO GLU MET TYR ILE ASP MET ALA LYS ARG GLU ALA SEQRES 7 A 279 GLU GLY SER HIS ILE MET LEU GLY ALA GLN ASN VAL ASP SEQRES 8 A 279 LEU ASN LEU SER GLY ALA PHE THR GLY GLU THR SER ALA SEQRES 9 A 279 ALA MET LEU LYS ASP ILE GLY ALA GLN TYR ILE ILE ILE SEQRES 10 A 279 GLY HIS SER GLU ARG ARG THR TYR HIS LYS GLU SER ASP SEQRES 11 A 279 GLU LEU ILE ALA LYS LYS PHE ALA VAL LEU LYS GLU GLN SEQRES 12 A 279 GLY LEU THR PRO VAL LEU CYS ILE GLY GLU THR GLU ALA SEQRES 13 A 279 GLU ASN GLU ALA GLY LYS THR GLU GLU VAL CYS ALA ARG SEQRES 14 A 279 GLN ILE ASP ALA VAL LEU LYS THR GLN GLY ALA ALA ALA SEQRES 15 A 279 PHE GLU GLY ALA VAL ILE ALA TYR GLU PRO VAL TRP ALA SEQRES 16 A 279 ILE GLY THR GLY LYS SER ALA THR PRO ALA GLN ALA GLN SEQRES 17 A 279 ALA VAL HIS LYS PHE ILE ARG ASP HIS ILE ALA LYS VAL SEQRES 18 A 279 ASP ALA ASN ILE ALA GLU GLN VAL ILE ILE GLN TYR GLY SEQRES 19 A 279 GLY SER VAL ASN ALA SER ASN ALA ALA GLU LEU PHE ALA SEQRES 20 A 279 GLN PRO ASP ILE ASP GLY ALA LEU VAL GLY GLY ALA SER SEQRES 21 A 279 LEU LYS ALA ASP ALA PHE ALA VAL ILE VAL LYS ALA ALA SEQRES 22 A 279 GLU ALA ALA LYS GLN ALA SEQRES 1 B 279 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 279 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET ARG SEQRES 3 B 279 HIS PRO LEU VAL MET GLY ASN TRP LYS LEU ASN GLY SER SEQRES 4 B 279 ARG HIS MET VAL HIS GLU LEU VAL SER ASN LEU ARG LYS SEQRES 5 B 279 GLU LEU ALA GLY VAL ALA GLY CYS ALA VAL ALA ILE ALA SEQRES 6 B 279 PRO PRO GLU MET TYR ILE ASP MET ALA LYS ARG GLU ALA SEQRES 7 B 279 GLU GLY SER HIS ILE MET LEU GLY ALA GLN ASN VAL ASP SEQRES 8 B 279 LEU ASN LEU SER GLY ALA PHE THR GLY GLU THR SER ALA SEQRES 9 B 279 ALA MET LEU LYS ASP ILE GLY ALA GLN TYR ILE ILE ILE SEQRES 10 B 279 GLY HIS SER GLU ARG ARG THR TYR HIS LYS GLU SER ASP SEQRES 11 B 279 GLU LEU ILE ALA LYS LYS PHE ALA VAL LEU LYS GLU GLN SEQRES 12 B 279 GLY LEU THR PRO VAL LEU CYS ILE GLY GLU THR GLU ALA SEQRES 13 B 279 GLU ASN GLU ALA GLY LYS THR GLU GLU VAL CYS ALA ARG SEQRES 14 B 279 GLN ILE ASP ALA VAL LEU LYS THR GLN GLY ALA ALA ALA SEQRES 15 B 279 PHE GLU GLY ALA VAL ILE ALA TYR GLU PRO VAL TRP ALA SEQRES 16 B 279 ILE GLY THR GLY LYS SER ALA THR PRO ALA GLN ALA GLN SEQRES 17 B 279 ALA VAL HIS LYS PHE ILE ARG ASP HIS ILE ALA LYS VAL SEQRES 18 B 279 ASP ALA ASN ILE ALA GLU GLN VAL ILE ILE GLN TYR GLY SEQRES 19 B 279 GLY SER VAL ASN ALA SER ASN ALA ALA GLU LEU PHE ALA SEQRES 20 B 279 GLN PRO ASP ILE ASP GLY ALA LEU VAL GLY GLY ALA SER SEQRES 21 B 279 LEU LYS ALA ASP ALA PHE ALA VAL ILE VAL LYS ALA ALA SEQRES 22 B 279 GLU ALA ALA LYS GLN ALA HET CL A 301 2 HET UVW A 302 8 HET PO4 A 303 5 HET EDO A 304 4 HET UVW B 301 8 HET EDO B 302 4 HET PEG B 303 7 HETNAM CL CHLORIDE ION HETNAM UVW ACETYLPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CL CL 1- FORMUL 4 UVW 2(C2 H5 O5 P) FORMUL 5 PO4 O4 P 3- FORMUL 6 EDO 2(C2 H6 O2) FORMUL 9 PEG C4 H10 O3 FORMUL 10 HOH *837(H2 O) HELIX 1 1 SER A 15 ALA A 31 1 17 HELIX 2 2 PRO A 43 MET A 45 5 3 HELIX 3 3 TYR A 46 GLU A 55 1 10 HELIX 4 4 SER A 79 GLY A 87 1 9 HELIX 5 5 HIS A 95 HIS A 102 1 8 HELIX 6 6 SER A 105 GLN A 119 1 15 HELIX 7 7 THR A 130 ALA A 136 1 7 HELIX 8 8 LYS A 138 GLY A 155 1 18 HELIX 9 9 ALA A 156 GLU A 160 5 5 HELIX 10 10 PRO A 168 ILE A 172 5 5 HELIX 11 11 THR A 179 LYS A 196 1 18 HELIX 12 12 ASP A 198 VAL A 205 1 8 HELIX 13 13 ASN A 217 ALA A 223 1 7 HELIX 14 14 GLY A 233 LEU A 237 5 5 HELIX 15 15 LYS A 238 GLN A 254 1 17 HELIX 16 16 SER B 15 LEU B 30 1 16 HELIX 17 17 PRO B 43 MET B 45 5 3 HELIX 18 18 TYR B 46 ALA B 54 1 9 HELIX 19 19 SER B 79 GLY B 87 1 9 HELIX 20 20 HIS B 95 HIS B 102 1 8 HELIX 21 21 SER B 105 GLY B 120 1 16 HELIX 22 22 THR B 130 ALA B 136 1 7 HELIX 23 23 LYS B 138 GLY B 155 1 18 HELIX 24 24 ALA B 156 GLU B 160 5 5 HELIX 25 25 PRO B 168 ILE B 172 5 5 HELIX 26 26 THR B 179 LYS B 196 1 18 HELIX 27 27 ASP B 198 VAL B 205 1 8 HELIX 28 28 ASN B 217 ALA B 223 1 7 HELIX 29 29 GLY B 233 LEU B 237 5 5 HELIX 30 30 LYS B 238 GLN B 254 1 17 SHEET 1 A 9 LEU A 5 ASN A 9 0 SHEET 2 A 9 ALA A 37 ALA A 41 1 O ALA A 37 N VAL A 6 SHEET 3 A 9 MET A 60 ALA A 63 1 O MET A 60 N VAL A 38 SHEET 4 A 9 TYR A 90 ILE A 93 1 O ILE A 92 N ALA A 63 SHEET 5 A 9 THR A 122 ILE A 127 1 O CYS A 126 N ILE A 93 SHEET 6 A 9 VAL A 163 TYR A 166 1 O VAL A 163 N LEU A 125 SHEET 7 A 9 ILE A 206 TYR A 209 1 O GLN A 208 N ILE A 164 SHEET 8 A 9 GLY A 229 VAL A 232 1 O GLY A 229 N TYR A 209 SHEET 9 A 9 LEU A 5 ASN A 9 1 N ASN A 9 O VAL A 232 SHEET 1 B 9 LEU B 5 ASN B 9 0 SHEET 2 B 9 ALA B 37 ALA B 41 1 O ALA B 41 N GLY B 8 SHEET 3 B 9 MET B 60 ALA B 63 1 O MET B 60 N VAL B 38 SHEET 4 B 9 ALA B 88 ILE B 93 1 O ILE B 92 N ALA B 63 SHEET 5 B 9 THR B 122 ILE B 127 1 O CYS B 126 N ILE B 93 SHEET 6 B 9 VAL B 163 TYR B 166 1 O VAL B 163 N LEU B 125 SHEET 7 B 9 ILE B 206 TYR B 209 1 O GLN B 208 N ILE B 164 SHEET 8 B 9 GLY B 229 VAL B 232 1 O GLY B 229 N TYR B 209 SHEET 9 B 9 LEU B 5 ASN B 9 1 N MET B 7 O VAL B 232 SITE 1 AC1 6 GLU A 21 LEU A 22 ASN A 25 ALA A 239 SITE 2 AC1 6 HOH A 535 HOH A 595 SITE 1 AC2 12 LYS A 11 SER A 212 GLY A 233 GLY A 234 SITE 2 AC2 12 HOH A 427 HOH A 429 HOH A 438 HOH A 441 SITE 3 AC2 12 HOH A 651 HOH A 702 HOH A 835 HOH A 836 SITE 1 AC3 3 ARG A 16 HOH A 839 ARG B 52 SITE 1 AC4 4 HIS A 17 ARG A 52 HOH A 740 HOH A 837 SITE 1 AC5 10 LYS B 11 ILE B 172 SER B 212 GLY B 233 SITE 2 AC5 10 GLY B 234 PEG B 303 HOH B 435 HOH B 559 SITE 3 AC5 10 HOH B 570 HOH B 756 SITE 1 AC6 6 SER A 177 ALA A 178 THR A 179 ASN B 214 SITE 2 AC6 6 SER B 216 ASN B 217 SITE 1 AC7 11 LYS B 11 HIS B 95 GLY B 233 GLY B 234 SITE 2 AC7 11 UVW B 301 HOH B 403 HOH B 435 HOH B 519 SITE 3 AC7 11 HOH B 570 HOH B 684 HOH B 756 CRYST1 46.535 67.529 150.336 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021489 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014808 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006652 0.00000 MASTER 425 0 7 30 18 0 15 6 0 0 0 44 END