HEADER DNA BINDING PROTEIN/DNA 19-SEP-13 4MTD TITLE ZINC UPTAKE REGULATOR COMPLEXED WITH ZINC AND DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC UPTAKE REGULATION PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ZINC UPTAKE REGULATOR; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ZNUABC OPERATOR DNA; COMPND 8 CHAIN: Y; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: ZNUABC OPERATOR DNA; COMPND 12 CHAIN: Z; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B4046, JW5714, YJBK, ZUR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24D; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS PROTEIN-DNA COMPLEX, WINGED-HELIX, DNA-BINDING REGULATORY PROTEIN, KEYWDS 2 HELIX-TURN-HELIX, WINGED HELIX, ZINC REGULATED REPRESSOR, DNA KEYWDS 3 BINDING, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.A.GILSTON,A.MONDRAGON,T.V.O'HALLORAN REVDAT 2 12-NOV-14 4MTD 1 JRNL REVDAT 1 05-NOV-14 4MTD 0 JRNL AUTH B.A.GILSTON,S.WANG,M.D.MARCUS,M.A.CANALIZO-HERNANDEZ, JRNL AUTH 2 E.P.SWINDELL,Y.XUE,A.MONDRAGON,T.V.O'HALLORAN JRNL TITL STRUCTURAL AND MECHANISTIC BASIS OF ZINC REGULATION ACROSS JRNL TITL 2 THE E. COLI ZUR REGULON. JRNL REF PLOS BIOL. V. 12 01987 2014 JRNL REFN ISSN 1544-9173 JRNL PMID 25369000 JRNL DOI 10.1371/JOURNAL.PBIO.1001987 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 43139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2290 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3120 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4632 REMARK 3 NUCLEIC ACID ATOMS : 1355 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.20000 REMARK 3 B22 (A**2) : -2.84000 REMARK 3 B33 (A**2) : -1.45000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.334 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.258 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.198 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.890 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6263 ; 0.006 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 5328 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8742 ; 1.117 ; 1.763 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12290 ; 0.896 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 596 ; 6.342 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 218 ;32.824 ;24.404 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 832 ;14.167 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;12.306 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 948 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6175 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1339 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2390 ; 2.748 ; 6.306 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2389 ; 2.748 ; 6.304 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2981 ; 4.637 ; 9.446 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3873 ; 3.181 ; 6.693 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4MTD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-13. REMARK 100 THE RCSB ID CODE IS RCSB082340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 78 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45429 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 36.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : 0.33100 REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 0.1 M CITRATE, REMARK 280 PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 96.66200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.23500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 96.66200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.23500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: A DIMER OF DIMERS IS COMPLEXED WITH THE DUPLEX DNA MOLECULE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, B, C, Y, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 153 REMARK 465 HIS A 154 REMARK 465 PRO A 155 REMARK 465 GLU A 156 REMARK 465 GLN A 157 REMARK 465 CYS A 158 REMARK 465 GLN A 159 REMARK 465 HIS A 160 REMARK 465 ASP A 161 REMARK 465 HIS A 162 REMARK 465 SER A 163 REMARK 465 VAL A 164 REMARK 465 GLN A 165 REMARK 465 VAL A 166 REMARK 465 LYS A 167 REMARK 465 LYS A 168 REMARK 465 LYS A 169 REMARK 465 PRO A 170 REMARK 465 ARG A 171 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ARG B 153 REMARK 465 HIS B 154 REMARK 465 PRO B 155 REMARK 465 GLU B 156 REMARK 465 GLN B 157 REMARK 465 CYS B 158 REMARK 465 GLN B 159 REMARK 465 HIS B 160 REMARK 465 ASP B 161 REMARK 465 HIS B 162 REMARK 465 SER B 163 REMARK 465 VAL B 164 REMARK 465 GLN B 165 REMARK 465 VAL B 166 REMARK 465 LYS B 167 REMARK 465 LYS B 168 REMARK 465 LYS B 169 REMARK 465 PRO B 170 REMARK 465 ARG B 171 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 LYS C 3 REMARK 465 THR C 4 REMARK 465 ARG C 153 REMARK 465 HIS C 154 REMARK 465 PRO C 155 REMARK 465 GLU C 156 REMARK 465 GLN C 157 REMARK 465 CYS C 158 REMARK 465 GLN C 159 REMARK 465 HIS C 160 REMARK 465 ASP C 161 REMARK 465 HIS C 162 REMARK 465 SER C 163 REMARK 465 VAL C 164 REMARK 465 GLN C 165 REMARK 465 VAL C 166 REMARK 465 LYS C 167 REMARK 465 LYS C 168 REMARK 465 LYS C 169 REMARK 465 PRO C 170 REMARK 465 ARG C 171 REMARK 465 MET D 1 REMARK 465 ARG D 153 REMARK 465 HIS D 154 REMARK 465 PRO D 155 REMARK 465 GLU D 156 REMARK 465 GLN D 157 REMARK 465 CYS D 158 REMARK 465 GLN D 159 REMARK 465 HIS D 160 REMARK 465 ASP D 161 REMARK 465 HIS D 162 REMARK 465 SER D 163 REMARK 465 VAL D 164 REMARK 465 GLN D 165 REMARK 465 VAL D 166 REMARK 465 LYS D 167 REMARK 465 LYS D 168 REMARK 465 LYS D 169 REMARK 465 PRO D 170 REMARK 465 ARG D 171 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA Y 1 P DA Y 1 OP3 -0.122 REMARK 500 DT Z 1 P DT Z 1 OP3 -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 83 83.24 -68.24 REMARK 500 PHE A 91 -80.36 -67.32 REMARK 500 PRO B 94 -142.97 -75.98 REMARK 500 ALA B 114 77.89 -168.60 REMARK 500 ASP C 39 54.28 -98.71 REMARK 500 GLN C 73 -159.88 -72.94 REMARK 500 THR C 95 111.98 -38.87 REMARK 500 ASN D 21 67.28 -108.40 REMARK 500 ASP D 39 37.73 -92.32 REMARK 500 LEU D 90 25.41 -145.19 REMARK 500 THR D 95 150.87 -49.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 111 OE1 REMARK 620 2 HIS D 96 NE2 90.8 REMARK 620 3 HIS D 77 NE2 95.6 109.3 REMARK 620 4 CYS D 88 SG 144.8 107.4 105.8 REMARK 620 5 GLU D 111 OE2 54.1 131.9 106.2 92.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 111 OE1 REMARK 620 2 HIS B 77 NE2 88.3 REMARK 620 3 HIS B 96 NE2 92.2 107.7 REMARK 620 4 CYS B 88 SG 145.5 107.0 111.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 111 OE1 REMARK 620 2 HIS C 77 NE2 102.2 REMARK 620 3 HIS C 96 NE2 89.3 104.3 REMARK 620 4 CYS C 88 SG 140.9 110.8 101.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 111 OE1 REMARK 620 2 HIS A 77 NE2 99.7 REMARK 620 3 HIS A 96 NE2 91.8 107.4 REMARK 620 4 CYS A 88 SG 136.2 104.4 114.4 REMARK 620 5 GLU A 111 OE2 54.4 90.4 144.6 89.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 106 SG REMARK 620 2 CYS C 146 SG 121.8 REMARK 620 3 CYS C 143 SG 109.7 108.6 REMARK 620 4 CYS C 103 SG 108.2 97.6 110.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 146 SG REMARK 620 2 CYS A 103 SG 102.4 REMARK 620 3 CYS A 143 SG 108.7 122.0 REMARK 620 4 CYS A 106 SG 106.6 101.3 114.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 146 SG REMARK 620 2 CYS B 143 SG 130.7 REMARK 620 3 CYS B 106 SG 111.8 105.4 REMARK 620 4 CYS B 103 SG 85.8 119.6 98.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 106 SG REMARK 620 2 CYS D 103 SG 102.4 REMARK 620 3 CYS D 146 SG 105.6 86.1 REMARK 620 4 CYS D 143 SG 105.8 120.2 132.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MTE RELATED DB: PDB DBREF 4MTD A 1 171 UNP P0AC51 ZUR_ECOLI 1 171 DBREF 4MTD B 1 171 UNP P0AC51 ZUR_ECOLI 1 171 DBREF 4MTD C 1 171 UNP P0AC51 ZUR_ECOLI 1 171 DBREF 4MTD D 1 171 UNP P0AC51 ZUR_ECOLI 1 171 DBREF 4MTD Y 1 33 PDB 4MTD 4MTD 1 33 DBREF 4MTD Z 1 33 PDB 4MTD 4MTD 1 33 SEQRES 1 A 171 MET GLU LYS THR THR THR GLN GLU LEU LEU ALA GLN ALA SEQRES 2 A 171 GLU LYS ILE CYS ALA GLN ARG ASN VAL ARG LEU THR PRO SEQRES 3 A 171 GLN ARG LEU GLU VAL LEU ARG LEU MET SER LEU GLN ASP SEQRES 4 A 171 GLY ALA ILE SER ALA TYR ASP LEU LEU ASP LEU LEU ARG SEQRES 5 A 171 GLU ALA GLU PRO GLN ALA LYS PRO PRO THR VAL TYR ARG SEQRES 6 A 171 ALA LEU ASP PHE LEU LEU GLU GLN GLY PHE VAL HIS LYS SEQRES 7 A 171 VAL GLU SER THR ASN SER TYR VAL LEU CYS HIS LEU PHE SEQRES 8 A 171 ASP GLN PRO THR HIS THR SER ALA MET PHE ILE CYS ASP SEQRES 9 A 171 ARG CYS GLY ALA VAL LYS GLU GLU CYS ALA GLU GLY VAL SEQRES 10 A 171 GLU ASP ILE MET HIS THR LEU ALA ALA LYS MET GLY PHE SEQRES 11 A 171 ALA LEU ARG HIS ASN VAL ILE GLU ALA HIS GLY LEU CYS SEQRES 12 A 171 ALA ALA CYS VAL GLU VAL GLU ALA CYS ARG HIS PRO GLU SEQRES 13 A 171 GLN CYS GLN HIS ASP HIS SER VAL GLN VAL LYS LYS LYS SEQRES 14 A 171 PRO ARG SEQRES 1 B 171 MET GLU LYS THR THR THR GLN GLU LEU LEU ALA GLN ALA SEQRES 2 B 171 GLU LYS ILE CYS ALA GLN ARG ASN VAL ARG LEU THR PRO SEQRES 3 B 171 GLN ARG LEU GLU VAL LEU ARG LEU MET SER LEU GLN ASP SEQRES 4 B 171 GLY ALA ILE SER ALA TYR ASP LEU LEU ASP LEU LEU ARG SEQRES 5 B 171 GLU ALA GLU PRO GLN ALA LYS PRO PRO THR VAL TYR ARG SEQRES 6 B 171 ALA LEU ASP PHE LEU LEU GLU GLN GLY PHE VAL HIS LYS SEQRES 7 B 171 VAL GLU SER THR ASN SER TYR VAL LEU CYS HIS LEU PHE SEQRES 8 B 171 ASP GLN PRO THR HIS THR SER ALA MET PHE ILE CYS ASP SEQRES 9 B 171 ARG CYS GLY ALA VAL LYS GLU GLU CYS ALA GLU GLY VAL SEQRES 10 B 171 GLU ASP ILE MET HIS THR LEU ALA ALA LYS MET GLY PHE SEQRES 11 B 171 ALA LEU ARG HIS ASN VAL ILE GLU ALA HIS GLY LEU CYS SEQRES 12 B 171 ALA ALA CYS VAL GLU VAL GLU ALA CYS ARG HIS PRO GLU SEQRES 13 B 171 GLN CYS GLN HIS ASP HIS SER VAL GLN VAL LYS LYS LYS SEQRES 14 B 171 PRO ARG SEQRES 1 C 171 MET GLU LYS THR THR THR GLN GLU LEU LEU ALA GLN ALA SEQRES 2 C 171 GLU LYS ILE CYS ALA GLN ARG ASN VAL ARG LEU THR PRO SEQRES 3 C 171 GLN ARG LEU GLU VAL LEU ARG LEU MET SER LEU GLN ASP SEQRES 4 C 171 GLY ALA ILE SER ALA TYR ASP LEU LEU ASP LEU LEU ARG SEQRES 5 C 171 GLU ALA GLU PRO GLN ALA LYS PRO PRO THR VAL TYR ARG SEQRES 6 C 171 ALA LEU ASP PHE LEU LEU GLU GLN GLY PHE VAL HIS LYS SEQRES 7 C 171 VAL GLU SER THR ASN SER TYR VAL LEU CYS HIS LEU PHE SEQRES 8 C 171 ASP GLN PRO THR HIS THR SER ALA MET PHE ILE CYS ASP SEQRES 9 C 171 ARG CYS GLY ALA VAL LYS GLU GLU CYS ALA GLU GLY VAL SEQRES 10 C 171 GLU ASP ILE MET HIS THR LEU ALA ALA LYS MET GLY PHE SEQRES 11 C 171 ALA LEU ARG HIS ASN VAL ILE GLU ALA HIS GLY LEU CYS SEQRES 12 C 171 ALA ALA CYS VAL GLU VAL GLU ALA CYS ARG HIS PRO GLU SEQRES 13 C 171 GLN CYS GLN HIS ASP HIS SER VAL GLN VAL LYS LYS LYS SEQRES 14 C 171 PRO ARG SEQRES 1 D 171 MET GLU LYS THR THR THR GLN GLU LEU LEU ALA GLN ALA SEQRES 2 D 171 GLU LYS ILE CYS ALA GLN ARG ASN VAL ARG LEU THR PRO SEQRES 3 D 171 GLN ARG LEU GLU VAL LEU ARG LEU MET SER LEU GLN ASP SEQRES 4 D 171 GLY ALA ILE SER ALA TYR ASP LEU LEU ASP LEU LEU ARG SEQRES 5 D 171 GLU ALA GLU PRO GLN ALA LYS PRO PRO THR VAL TYR ARG SEQRES 6 D 171 ALA LEU ASP PHE LEU LEU GLU GLN GLY PHE VAL HIS LYS SEQRES 7 D 171 VAL GLU SER THR ASN SER TYR VAL LEU CYS HIS LEU PHE SEQRES 8 D 171 ASP GLN PRO THR HIS THR SER ALA MET PHE ILE CYS ASP SEQRES 9 D 171 ARG CYS GLY ALA VAL LYS GLU GLU CYS ALA GLU GLY VAL SEQRES 10 D 171 GLU ASP ILE MET HIS THR LEU ALA ALA LYS MET GLY PHE SEQRES 11 D 171 ALA LEU ARG HIS ASN VAL ILE GLU ALA HIS GLY LEU CYS SEQRES 12 D 171 ALA ALA CYS VAL GLU VAL GLU ALA CYS ARG HIS PRO GLU SEQRES 13 D 171 GLN CYS GLN HIS ASP HIS SER VAL GLN VAL LYS LYS LYS SEQRES 14 D 171 PRO ARG SEQRES 1 Y 33 DA DG DA DA DG DT DG DT DG DA DT DA DT SEQRES 2 Y 33 DT DA DT DA DA DC DA DT DT DT DC DA DT SEQRES 3 Y 33 DG DA DC DT DA DT DG SEQRES 1 Z 33 DT DA DG DT DC DA DT DG DA DA DA DT DG SEQRES 2 Z 33 DT DT DA DT DA DA DT DA DT DC DA DC DA SEQRES 3 Z 33 DC DT DT DC DT DC DA HET ZN A 201 1 HET ZN A 202 1 HET ZN B 201 1 HET ZN B 202 1 HET ZN C 201 1 HET ZN C 202 1 HET ZN D 201 1 HET ZN D 202 1 HETNAM ZN ZINC ION FORMUL 7 ZN 8(ZN 2+) HELIX 1 1 THR A 4 ARG A 20 1 17 HELIX 2 2 THR A 25 GLN A 38 1 14 HELIX 3 3 SER A 43 GLU A 55 1 13 HELIX 4 4 LYS A 59 GLN A 73 1 15 HELIX 5 5 ALA A 114 MET A 128 1 15 HELIX 6 6 CYS A 143 CYS A 152 1 10 HELIX 7 7 THR B 4 ARG B 20 1 17 HELIX 8 8 THR B 25 GLN B 38 1 14 HELIX 9 9 SER B 43 GLU B 55 1 13 HELIX 10 10 LYS B 59 GLN B 73 1 15 HELIX 11 11 ALA B 114 MET B 128 1 15 HELIX 12 12 CYS B 143 CYS B 152 1 10 HELIX 13 13 THR C 6 ARG C 20 1 15 HELIX 14 14 THR C 25 GLN C 38 1 14 HELIX 15 15 SER C 43 GLU C 55 1 13 HELIX 16 16 LYS C 59 GLN C 73 1 15 HELIX 17 17 GLU C 80 ASN C 83 5 4 HELIX 18 18 ALA C 114 MET C 128 1 15 HELIX 19 19 CYS C 143 CYS C 152 1 10 HELIX 20 20 THR D 5 ARG D 20 1 16 HELIX 21 21 THR D 25 LEU D 37 1 13 HELIX 22 22 SER D 43 GLU D 55 1 13 HELIX 23 23 LYS D 59 GLN D 73 1 15 HELIX 24 24 ALA D 114 MET D 128 1 15 HELIX 25 25 CYS D 143 ALA D 151 1 9 SHEET 1 A 2 VAL A 76 VAL A 79 0 SHEET 2 A 2 SER A 84 LEU A 87 -1 O SER A 84 N VAL A 79 SHEET 1 B 6 VAL A 109 GLU A 112 0 SHEET 2 B 6 ALA A 99 CYS A 103 -1 N ALA A 99 O GLU A 112 SHEET 3 B 6 ALA A 131 LEU A 142 1 O ALA A 139 N MET A 100 SHEET 4 B 6 ALA D 131 LEU D 142 -1 O HIS D 134 N HIS A 140 SHEET 5 B 6 ALA D 99 CYS D 103 1 N MET D 100 O ALA D 139 SHEET 6 B 6 VAL D 109 GLU D 112 -1 O GLU D 112 N ALA D 99 SHEET 1 C 2 VAL B 76 VAL B 79 0 SHEET 2 C 2 SER B 84 LEU B 87 -1 O SER B 84 N VAL B 79 SHEET 1 D 6 VAL B 109 CYS B 113 0 SHEET 2 D 6 SER B 98 CYS B 103 -1 N ALA B 99 O GLU B 112 SHEET 3 D 6 ALA B 131 LEU B 142 1 O ALA B 139 N MET B 100 SHEET 4 D 6 ALA C 131 LEU C 142 -1 O GLU C 138 N VAL B 136 SHEET 5 D 6 SER C 98 CYS C 103 1 N MET C 100 O ALA C 139 SHEET 6 D 6 VAL C 109 CYS C 113 -1 O LYS C 110 N PHE C 101 SHEET 1 E 2 VAL C 76 VAL C 79 0 SHEET 2 E 2 SER C 84 LEU C 87 -1 O SER C 84 N VAL C 79 SHEET 1 F 2 VAL D 76 VAL D 79 0 SHEET 2 F 2 SER D 84 LEU D 87 -1 O VAL D 86 N HIS D 77 LINK OE1 GLU D 111 ZN ZN D 202 1555 1555 1.98 LINK OE1 GLU B 111 ZN ZN B 201 1555 1555 1.99 LINK OE1 GLU C 111 ZN ZN C 202 1555 1555 1.99 LINK OE1 GLU A 111 ZN ZN A 202 1555 1555 1.99 LINK NE2 HIS A 77 ZN ZN A 202 1555 1555 2.07 LINK NE2 HIS B 77 ZN ZN B 201 1555 1555 2.08 LINK NE2 HIS D 96 ZN ZN D 202 1555 1555 2.08 LINK NE2 HIS B 96 ZN ZN B 201 1555 1555 2.08 LINK NE2 HIS C 77 ZN ZN C 202 1555 1555 2.08 LINK NE2 HIS D 77 ZN ZN D 202 1555 1555 2.08 LINK NE2 HIS C 96 ZN ZN C 202 1555 1555 2.08 LINK NE2 HIS A 96 ZN ZN A 202 1555 1555 2.09 LINK SG CYS C 106 ZN ZN C 201 1555 1555 2.30 LINK SG CYS C 146 ZN ZN C 201 1555 1555 2.31 LINK SG CYS A 146 ZN ZN A 201 1555 1555 2.31 LINK SG CYS D 88 ZN ZN D 202 1555 1555 2.31 LINK SG CYS B 146 ZN ZN B 202 1555 1555 2.31 LINK SG CYS B 88 ZN ZN B 201 1555 1555 2.31 LINK SG CYS A 103 ZN ZN A 201 1555 1555 2.31 LINK SG CYS A 88 ZN ZN A 202 1555 1555 2.32 LINK SG CYS B 143 ZN ZN B 202 1555 1555 2.33 LINK SG CYS A 143 ZN ZN A 201 1555 1555 2.33 LINK SG CYS C 88 ZN ZN C 202 1555 1555 2.33 LINK SG CYS C 143 ZN ZN C 201 1555 1555 2.33 LINK SG CYS D 106 ZN ZN D 201 1555 1555 2.34 LINK SG CYS D 103 ZN ZN D 201 1555 1555 2.34 LINK SG CYS D 146 ZN ZN D 201 1555 1555 2.34 LINK SG CYS C 103 ZN ZN C 201 1555 1555 2.34 LINK SG CYS D 143 ZN ZN D 201 1555 1555 2.34 LINK SG CYS B 106 ZN ZN B 202 1555 1555 2.34 LINK SG CYS A 106 ZN ZN A 201 1555 1555 2.35 LINK SG CYS B 103 ZN ZN B 202 1555 1555 2.35 LINK OE2 GLU A 111 ZN ZN A 202 1555 1555 2.63 LINK OE2 GLU D 111 ZN ZN D 202 1555 1555 2.64 SITE 1 AC1 4 CYS A 103 CYS A 106 CYS A 143 CYS A 146 SITE 1 AC2 4 HIS A 77 CYS A 88 HIS A 96 GLU A 111 SITE 1 AC3 4 HIS B 77 CYS B 88 HIS B 96 GLU B 111 SITE 1 AC4 4 CYS B 103 CYS B 106 CYS B 143 CYS B 146 SITE 1 AC5 4 CYS C 103 CYS C 106 CYS C 143 CYS C 146 SITE 1 AC6 4 HIS C 77 CYS C 88 HIS C 96 GLU C 111 SITE 1 AC7 4 CYS D 103 CYS D 106 CYS D 143 CYS D 146 SITE 1 AC8 4 HIS D 77 CYS D 88 HIS D 96 GLU D 111 CRYST1 193.324 80.470 98.770 90.00 120.15 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005173 0.000000 0.003005 0.00000 SCALE2 0.000000 0.012427 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011709 0.00000 MASTER 494 0 8 25 20 0 8 6 0 0 0 62 END