HEADER HYDROLASE 24-AUG-13 4ME4 TITLE CRYSTAL STRUCTURE OF A HD-GYP DOMAIN (A CYCLIC-DI-GMP TITLE 2 PHOSPHODIESTERASE) CONTAINING A TRI-NUCLEAR METAL CENTRE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METAL DEPENDENT PHOSPHOHYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PERSEPHONELLA MARINA; SOURCE 3 ORGANISM_TAXID: 123214; SOURCE 4 STRAIN: DSM 14350 / EX-H1; SOURCE 5 GENE: PERMA_0986; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, OXFORD PROTEIN PRODUCTION FACILITY, OPPF, KEYWDS 2 PHOSPHOHYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BELLINI,M.A.WALSH,OXFORD PROTEIN PRODUCTION FACILITY (OPPF) REVDAT 2 11-AUG-21 4ME4 1 TITLE REMARK SEQADV LINK REVDAT 1 19-FEB-14 4ME4 0 JRNL AUTH D.BELLINI,D.L.CALY,Y.MCCARTHY,M.BUMANN,S.Q.AN,J.M.DOW, JRNL AUTH 2 R.P.RYAN,M.A.WALSH JRNL TITL CRYSTAL STRUCTURE OF AN HD-GYP DOMAIN CYCLIC-DI-GMP JRNL TITL 2 PHOSPHODIESTERASE REVEALS AN ENZYME WITH A NOVEL TRINUCLEAR JRNL TITL 3 CATALYTIC IRON CENTRE. JRNL REF MOL.MICROBIOL. V. 91 26 2014 JRNL REFN ISSN 0950-382X JRNL PMID 24176013 JRNL DOI 10.1111/MMI.12447 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 45625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2441 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3120 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5929 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.23000 REMARK 3 B22 (A**2) : 2.09000 REMARK 3 B33 (A**2) : -0.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.260 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.960 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6119 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8240 ; 1.423 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 722 ; 5.775 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 298 ;36.158 ;23.792 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1149 ;16.375 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;17.200 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 900 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4586 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 159 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8120 47.9840 54.2910 REMARK 3 T TENSOR REMARK 3 T11: 0.1191 T22: 0.0795 REMARK 3 T33: 0.1134 T12: -0.0020 REMARK 3 T13: -0.0022 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 2.4448 L22: 1.8761 REMARK 3 L33: 2.2591 L12: -0.4613 REMARK 3 L13: -0.2370 L23: 0.5318 REMARK 3 S TENSOR REMARK 3 S11: -0.0380 S12: 0.2885 S13: 0.1469 REMARK 3 S21: -0.2422 S22: -0.0465 S23: 0.0501 REMARK 3 S31: -0.1650 S32: -0.0770 S33: 0.0844 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 160 A 360 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6250 21.2150 17.6590 REMARK 3 T TENSOR REMARK 3 T11: 0.0838 T22: 0.1329 REMARK 3 T33: 0.0737 T12: -0.0005 REMARK 3 T13: 0.0011 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.3914 L22: 0.7231 REMARK 3 L33: 1.7586 L12: 0.1421 REMARK 3 L13: 0.0939 L23: 0.3176 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: -0.1042 S13: 0.0550 REMARK 3 S21: 0.0226 S22: 0.0410 S23: 0.0600 REMARK 3 S31: 0.1432 S32: -0.0901 S33: -0.0420 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 159 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8960 17.3650 63.6910 REMARK 3 T TENSOR REMARK 3 T11: 0.2386 T22: 0.0136 REMARK 3 T33: 0.1554 T12: -0.0205 REMARK 3 T13: 0.0785 T23: -0.0407 REMARK 3 L TENSOR REMARK 3 L11: 1.6171 L22: 3.0030 REMARK 3 L33: 2.0615 L12: 0.0307 REMARK 3 L13: 0.1093 L23: -0.1711 REMARK 3 S TENSOR REMARK 3 S11: -0.0847 S12: 0.0501 S13: -0.2043 REMARK 3 S21: 0.1753 S22: 0.0219 S23: -0.2664 REMARK 3 S31: 0.4146 S32: 0.0417 S33: 0.0628 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 160 B 360 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8160 31.9600 24.6160 REMARK 3 T TENSOR REMARK 3 T11: 0.0536 T22: 0.2404 REMARK 3 T33: 0.1215 T12: 0.0040 REMARK 3 T13: 0.0148 T23: -0.0593 REMARK 3 L TENSOR REMARK 3 L11: 1.7383 L22: 1.0539 REMARK 3 L33: 1.2106 L12: 0.4703 REMARK 3 L13: 0.4849 L23: 0.1593 REMARK 3 S TENSOR REMARK 3 S11: -0.0175 S12: 0.2007 S13: -0.0539 REMARK 3 S21: -0.0405 S22: 0.0676 S23: -0.1273 REMARK 3 S31: 0.0386 S32: 0.2816 S33: -0.0500 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4ME4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48066 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 71.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4MCW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9 M SUCCINATE PH 7, 2% PEG 2000, 0.1 REMARK 280 M MES BUFFER PH 6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.04500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 90.56000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 115.75500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.04500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 90.56000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 115.75500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.04500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 90.56000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 115.75500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.04500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 90.56000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 115.75500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT CONTAINS ONE DIMER, WHICH IS THE BIOLOGICAL REMARK 300 ASSEMBLY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 515 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 517 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 537 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 PRO A -4 REMARK 465 GLY A -3 REMARK 465 TYR A -2 REMARK 465 GLN A -1 REMARK 465 ASP A 361 REMARK 465 GLU A 362 REMARK 465 ASP A 363 REMARK 465 GLY B -5 REMARK 465 PRO B -4 REMARK 465 GLY B -3 REMARK 465 ASP B 361 REMARK 465 GLU B 362 REMARK 465 ASP B 363 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE FE B 403 N1 IMD B 407 1.68 REMARK 500 N3 IMD A 407 O HOH A 502 1.76 REMARK 500 CE1 HIS A 221 O HOH A 506 1.91 REMARK 500 NE2 HIS B 221 C2 IMD B 407 2.01 REMARK 500 CG1 ILE B 268 O HOH B 541 2.06 REMARK 500 C5 IMD A 407 O HOH A 506 2.06 REMARK 500 OE1 GLU B 185 O HOH B 503 2.07 REMARK 500 OE2 GLU A 185 C2 IMD A 407 2.08 REMARK 500 N TYR B -2 O HOH B 546 2.14 REMARK 500 OE2 GLU A 185 N3 IMD A 407 2.17 REMARK 500 CE MET A 300 O HOH A 539 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 39 NE2 GLN A 119 8455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 168 CG HIS A 168 CD2 0.056 REMARK 500 TRP A 244 CE2 TRP A 244 CD2 0.073 REMARK 500 HIS A 250 CG HIS A 250 CD2 0.062 REMARK 500 HIS B 276 CG HIS B 276 CD2 0.054 REMARK 500 HIS B 277 CG HIS B 277 CD2 0.057 REMARK 500 HIS B 336 CG HIS B 336 CD2 0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 49 -72.85 -69.88 REMARK 500 HIS A 59 -16.65 90.61 REMARK 500 VAL A 61 -175.29 -68.51 REMARK 500 ARG A 107 -70.11 -115.25 REMARK 500 LYS A 118 -1.86 -59.67 REMARK 500 ASN A 129 72.65 54.18 REMARK 500 TYR A 316 -11.30 64.41 REMARK 500 LYS A 335 -87.93 -102.16 REMARK 500 LEU A 359 78.21 -111.97 REMARK 500 VAL B 57 -76.02 -89.00 REMARK 500 ARG B 107 -62.37 -105.99 REMARK 500 ASN B 129 78.97 55.30 REMARK 500 ASP B 241 41.95 -91.93 REMARK 500 GLU B 242 -38.83 -132.64 REMARK 500 TYR B 316 -12.08 78.86 REMARK 500 LYS B 335 -92.06 -115.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 185 OE1 REMARK 620 2 ASP A 222 OD2 85.3 REMARK 620 3 SIN A 404 O3 82.8 120.4 REMARK 620 4 SIN A 404 O4 120.3 91.9 48.4 REMARK 620 5 SIN A 405 O1 78.5 155.0 76.6 112.6 REMARK 620 6 HOH A 501 O 165.4 89.3 111.6 73.4 101.6 REMARK 620 7 HOH A 502 O 84.5 86.4 149.1 155.0 73.3 81.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 403 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 185 OE2 REMARK 620 2 HIS A 189 NE2 82.7 REMARK 620 3 ASP A 305 OD1 174.2 100.9 REMARK 620 4 SIN A 405 O2 78.7 105.7 104.5 REMARK 620 5 IMD A 407 N3 66.2 103.0 108.4 130.6 REMARK 620 6 HOH A 502 O 94.0 162.8 81.2 90.1 60.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 222 OD1 REMARK 620 2 HIS A 250 NE2 82.1 REMARK 620 3 HIS A 276 NE2 87.1 97.4 REMARK 620 4 HIS A 277 NE2 166.2 90.5 82.3 REMARK 620 5 SIN A 404 O4 95.1 83.5 177.8 95.7 REMARK 620 6 HOH A 501 O 90.8 172.2 85.5 97.1 93.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 403 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 185 OE2 REMARK 620 2 HIS B 189 NE2 93.6 REMARK 620 3 ASP B 305 OD1 148.3 109.0 REMARK 620 4 5GP B 404 O1P 59.3 101.3 93.7 REMARK 620 5 HOH B 502 O 85.8 161.2 79.7 94.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 222 OD1 REMARK 620 2 HIS B 250 NE2 88.1 REMARK 620 3 HIS B 276 NE2 86.8 103.5 REMARK 620 4 HIS B 277 NE2 170.9 91.5 84.5 REMARK 620 5 SIN B 405 O4 98.2 85.0 170.4 90.8 REMARK 620 6 HOH B 501 O 83.9 163.8 90.2 98.5 82.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 222 OD2 REMARK 620 2 5GP B 404 O3P 141.6 REMARK 620 3 SIN B 405 O4 104.1 109.4 REMARK 620 4 HOH B 501 O 83.6 120.9 78.2 REMARK 620 5 HOH B 502 O 74.3 90.4 141.2 63.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SIN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SIN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SIN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SIN B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SIN B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MCW RELATED DB: PDB REMARK 900 A HIGHER RESOLUTION APO STRUCTURE REMARK 900 RELATED ID: 4MDZ RELATED DB: PDB REMARK 900 SAME STRUCTURE WITH SUBSTRATE BOUND DBREF 4ME4 A 2 363 UNP C0QQ26 C0QQ26_PERMH 2 363 DBREF 4ME4 B 2 363 UNP C0QQ26 C0QQ26_PERMH 2 363 SEQADV 4ME4 GLY A -5 UNP C0QQ26 EXPRESSION TAG SEQADV 4ME4 PRO A -4 UNP C0QQ26 EXPRESSION TAG SEQADV 4ME4 GLY A -3 UNP C0QQ26 EXPRESSION TAG SEQADV 4ME4 TYR A -2 UNP C0QQ26 EXPRESSION TAG SEQADV 4ME4 GLN A -1 UNP C0QQ26 EXPRESSION TAG SEQADV 4ME4 ASP A 0 UNP C0QQ26 EXPRESSION TAG SEQADV 4ME4 PRO A 1 UNP C0QQ26 EXPRESSION TAG SEQADV 4ME4 ALA A 41 UNP C0QQ26 CYS 41 ENGINEERED MUTATION SEQADV 4ME4 ALA A 197 UNP C0QQ26 CYS 197 EXPRESSION TAG SEQADV 4ME4 GLY B -5 UNP C0QQ26 EXPRESSION TAG SEQADV 4ME4 PRO B -4 UNP C0QQ26 EXPRESSION TAG SEQADV 4ME4 GLY B -3 UNP C0QQ26 EXPRESSION TAG SEQADV 4ME4 TYR B -2 UNP C0QQ26 EXPRESSION TAG SEQADV 4ME4 GLN B -1 UNP C0QQ26 EXPRESSION TAG SEQADV 4ME4 ASP B 0 UNP C0QQ26 EXPRESSION TAG SEQADV 4ME4 PRO B 1 UNP C0QQ26 EXPRESSION TAG SEQADV 4ME4 ALA B 41 UNP C0QQ26 CYS 41 ENGINEERED MUTATION SEQADV 4ME4 ALA B 197 UNP C0QQ26 CYS 197 ENGINEERED MUTATION SEQRES 1 A 369 GLY PRO GLY TYR GLN ASP PRO GLU ARG LYS LEU LYS ILE SEQRES 2 A 369 LEU LEU ASP TYR SER SER LYS ILE ALA ASN GLU LYS ASP SEQRES 3 A 369 LEU ARG ASN VAL LEU LEU PHE LEU THR ASP LEU ALA LYS SEQRES 4 A 369 GLU ILE MET GLU ALA ASP ARG ALA SER ILE PHE LEU TYR SEQRES 5 A 369 ASP ASP GLN LYS LYS THR LEU TRP THR ILE VAL ALA HIS SEQRES 6 A 369 GLY VAL ASP ARG ILE GLU ILE ASP ALA ASP LYS GLY ILE SEQRES 7 A 369 ALA GLY TYR VAL PHE ARG THR GLY GLU ILE LEU ASN ILE SEQRES 8 A 369 PRO ASP ALA TYR LYS ASP PRO ARG PHE ASP ARG ASP ILE SEQRES 9 A 369 ASP LYS ARG THR GLY TYR ARG THR ARG THR ILE LEU ALA SEQRES 10 A 369 VAL PRO LEU PHE ASP ARG LYS GLN ASN ILE ILE GLY VAL SEQRES 11 A 369 PHE GLN VAL ILE ASN LYS LEU THR ASN SER VAL PHE THR SEQRES 12 A 369 GLU GLU ASP ILE GLU LEU LEU ARG HIS ILE SER LEU TYR SEQRES 13 A 369 ALA SER SER THR ILE GLU ASN ALA ILE LEU TYR GLU LYS SEQRES 14 A 369 LEU LYS LYS ALA HIS GLU ASP VAL ILE TYR ARG LEU SER SEQRES 15 A 369 HIS ALA THR LYS PHE LYS ASP PRO GLU THR GLN ASN HIS SEQRES 16 A 369 ILE ILE ARG VAL GLY LEU TYR ALA GLU ILE LEU ALA ARG SEQRES 17 A 369 GLU ALA GLY LEU ASP GLU GLU ASP VAL GLU LEU VAL LYS SEQRES 18 A 369 LEU ALA ALA PRO MET HIS ASP ILE GLY LYS VAL GLY ILE SEQRES 19 A 369 PRO ASP ARG VAL LEU LEU LYS PRO GLY LYS LEU ASN ASP SEQRES 20 A 369 GLU GLU TRP GLU ILE MET LYS LYS HIS THR ILE TYR GLY SEQRES 21 A 369 TYR GLU ILE LEU LYS GLY GLY ASP SER ARG LEU LEU GLN SEQRES 22 A 369 ILE ALA ALA ASP ILE ALA ILE GLU HIS HIS GLU ARG TRP SEQRES 23 A 369 ASP GLY THR GLY TYR PRO PHE GLY LYS LYS GLY GLU GLU SEQRES 24 A 369 ILE SER ILE TYR GLY ARG MET THR SER ILE SER ASP VAL SEQRES 25 A 369 PHE ASP ALA LEU THR SER ASP ARG PRO TYR LYS LYS ALA SEQRES 26 A 369 TRP ASP MET ASP ARG THR VAL ARG PHE PHE LYS GLU GLN SEQRES 27 A 369 LYS GLY LYS HIS PHE ASP PRO PHE LEU THR ASP ILE PHE SEQRES 28 A 369 LEU LYS ASN ILE ASP GLN MET PHE SER ILE LYS ARG GLU SEQRES 29 A 369 LEU ARG ASP GLU ASP SEQRES 1 B 369 GLY PRO GLY TYR GLN ASP PRO GLU ARG LYS LEU LYS ILE SEQRES 2 B 369 LEU LEU ASP TYR SER SER LYS ILE ALA ASN GLU LYS ASP SEQRES 3 B 369 LEU ARG ASN VAL LEU LEU PHE LEU THR ASP LEU ALA LYS SEQRES 4 B 369 GLU ILE MET GLU ALA ASP ARG ALA SER ILE PHE LEU TYR SEQRES 5 B 369 ASP ASP GLN LYS LYS THR LEU TRP THR ILE VAL ALA HIS SEQRES 6 B 369 GLY VAL ASP ARG ILE GLU ILE ASP ALA ASP LYS GLY ILE SEQRES 7 B 369 ALA GLY TYR VAL PHE ARG THR GLY GLU ILE LEU ASN ILE SEQRES 8 B 369 PRO ASP ALA TYR LYS ASP PRO ARG PHE ASP ARG ASP ILE SEQRES 9 B 369 ASP LYS ARG THR GLY TYR ARG THR ARG THR ILE LEU ALA SEQRES 10 B 369 VAL PRO LEU PHE ASP ARG LYS GLN ASN ILE ILE GLY VAL SEQRES 11 B 369 PHE GLN VAL ILE ASN LYS LEU THR ASN SER VAL PHE THR SEQRES 12 B 369 GLU GLU ASP ILE GLU LEU LEU ARG HIS ILE SER LEU TYR SEQRES 13 B 369 ALA SER SER THR ILE GLU ASN ALA ILE LEU TYR GLU LYS SEQRES 14 B 369 LEU LYS LYS ALA HIS GLU ASP VAL ILE TYR ARG LEU SER SEQRES 15 B 369 HIS ALA THR LYS PHE LYS ASP PRO GLU THR GLN ASN HIS SEQRES 16 B 369 ILE ILE ARG VAL GLY LEU TYR ALA GLU ILE LEU ALA ARG SEQRES 17 B 369 GLU ALA GLY LEU ASP GLU GLU ASP VAL GLU LEU VAL LYS SEQRES 18 B 369 LEU ALA ALA PRO MET HIS ASP ILE GLY LYS VAL GLY ILE SEQRES 19 B 369 PRO ASP ARG VAL LEU LEU LYS PRO GLY LYS LEU ASN ASP SEQRES 20 B 369 GLU GLU TRP GLU ILE MET LYS LYS HIS THR ILE TYR GLY SEQRES 21 B 369 TYR GLU ILE LEU LYS GLY GLY ASP SER ARG LEU LEU GLN SEQRES 22 B 369 ILE ALA ALA ASP ILE ALA ILE GLU HIS HIS GLU ARG TRP SEQRES 23 B 369 ASP GLY THR GLY TYR PRO PHE GLY LYS LYS GLY GLU GLU SEQRES 24 B 369 ILE SER ILE TYR GLY ARG MET THR SER ILE SER ASP VAL SEQRES 25 B 369 PHE ASP ALA LEU THR SER ASP ARG PRO TYR LYS LYS ALA SEQRES 26 B 369 TRP ASP MET ASP ARG THR VAL ARG PHE PHE LYS GLU GLN SEQRES 27 B 369 LYS GLY LYS HIS PHE ASP PRO PHE LEU THR ASP ILE PHE SEQRES 28 B 369 LEU LYS ASN ILE ASP GLN MET PHE SER ILE LYS ARG GLU SEQRES 29 B 369 LEU ARG ASP GLU ASP HET FE A 401 1 HET FE A 402 1 HET FE A 403 1 HET SIN A 404 8 HET SIN A 405 8 HET SIN A 406 8 HET IMD A 407 5 HET FE B 401 1 HET FE B 402 1 HET FE B 403 1 HET 5GP B 404 24 HET SIN B 405 8 HET SIN B 406 8 HET IMD B 407 5 HETNAM FE FE (III) ION HETNAM SIN SUCCINIC ACID HETNAM IMD IMIDAZOLE HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE FORMUL 3 FE 6(FE 3+) FORMUL 6 SIN 5(C4 H6 O4) FORMUL 9 IMD 2(C3 H5 N2 1+) FORMUL 13 5GP C10 H14 N5 O8 P FORMUL 17 HOH *140(H2 O) HELIX 1 1 PRO A 1 GLU A 18 1 18 HELIX 2 2 ASP A 20 GLU A 37 1 18 HELIX 3 3 GLY A 71 GLY A 80 1 10 HELIX 4 4 ASP A 87 ASP A 91 5 5 HELIX 5 5 ARG A 96 GLY A 103 1 8 HELIX 6 6 THR A 137 HIS A 177 1 41 HELIX 7 7 ALA A 178 LYS A 182 5 5 HELIX 8 8 THR A 186 ALA A 204 1 19 HELIX 9 9 ASP A 207 ALA A 218 1 12 HELIX 10 10 PRO A 219 HIS A 221 5 3 HELIX 11 11 ASP A 222 ILE A 228 5 7 HELIX 12 12 PRO A 229 LEU A 234 1 6 HELIX 13 13 ASN A 240 LYS A 249 1 10 HELIX 14 14 LYS A 249 LYS A 259 1 11 HELIX 15 15 SER A 263 HIS A 276 1 14 HELIX 16 16 LYS A 290 ILE A 294 5 5 HELIX 17 17 SER A 295 THR A 311 1 17 HELIX 18 18 ASP A 321 LYS A 333 1 13 HELIX 19 19 ASP A 338 LEU A 359 1 22 HELIX 20 20 GLU B 2 GLU B 18 1 17 HELIX 21 21 ASP B 20 GLU B 37 1 18 HELIX 22 22 LYS B 70 GLY B 80 1 11 HELIX 23 23 ASP B 87 ASP B 91 5 5 HELIX 24 24 ARG B 96 THR B 102 1 7 HELIX 25 25 THR B 137 HIS B 177 1 41 HELIX 26 26 ALA B 178 LYS B 182 5 5 HELIX 27 27 THR B 186 ALA B 204 1 19 HELIX 28 28 ASP B 207 ALA B 218 1 12 HELIX 29 29 PRO B 219 HIS B 221 5 3 HELIX 30 30 ASP B 222 ILE B 228 5 7 HELIX 31 31 PRO B 229 LEU B 234 1 6 HELIX 32 32 GLU B 242 LYS B 249 1 8 HELIX 33 33 LYS B 249 LYS B 259 1 11 HELIX 34 34 SER B 263 HIS B 276 1 14 HELIX 35 35 LYS B 290 ILE B 294 5 5 HELIX 36 36 SER B 295 THR B 311 1 17 HELIX 37 37 ASP B 321 LYS B 333 1 13 HELIX 38 38 ASP B 338 ASN B 348 1 11 HELIX 39 39 ASN B 348 LEU B 359 1 12 SHEET 1 A 6 ARG A 63 ILE A 66 0 SHEET 2 A 6 THR A 52 ILE A 56 -1 N LEU A 53 O ILE A 66 SHEET 3 A 6 ALA A 38 ASP A 47 -1 N LEU A 45 O TRP A 54 SHEET 4 A 6 ILE A 121 LYS A 130 -1 O ILE A 128 N ARG A 40 SHEET 5 A 6 ILE A 109 PHE A 115 -1 N LEU A 110 O VAL A 127 SHEET 6 A 6 LEU A 83 ILE A 85 -1 N ILE A 85 O ILE A 109 SHEET 1 B 6 ARG B 63 ILE B 66 0 SHEET 2 B 6 THR B 52 ILE B 56 -1 N LEU B 53 O ILE B 66 SHEET 3 B 6 ALA B 38 ASP B 47 -1 N ASP B 47 O THR B 52 SHEET 4 B 6 ILE B 121 LYS B 130 -1 O GLN B 126 N SER B 42 SHEET 5 B 6 ILE B 109 PHE B 115 -1 N LEU B 110 O VAL B 127 SHEET 6 B 6 LEU B 83 ILE B 85 -1 N ILE B 85 O ILE B 109 LINK OE1 GLU A 185 FE FE A 402 1555 1555 2.39 LINK OE2 GLU A 185 FE FE A 403 1555 1555 2.15 LINK NE2 HIS A 189 FE FE A 403 1555 1555 1.97 LINK OD1 ASP A 222 FE FE A 401 1555 1555 2.14 LINK OD2 ASP A 222 FE FE A 402 1555 1555 2.02 LINK NE2 HIS A 250 FE FE A 401 1555 1555 2.24 LINK NE2 HIS A 276 FE FE A 401 1555 1555 2.23 LINK NE2 HIS A 277 FE FE A 401 1555 1555 2.08 LINK OD1 ASP A 305 FE FE A 403 1555 1555 2.28 LINK FE FE A 401 O4 SIN A 404 1555 1555 2.11 LINK FE FE A 401 O HOH A 501 1555 1555 1.90 LINK FE FE A 402 O3 SIN A 404 1555 1555 2.55 LINK FE FE A 402 O4 SIN A 404 1555 1555 2.71 LINK FE FE A 402 O1 SIN A 405 1555 1555 2.41 LINK FE FE A 402 O HOH A 501 1555 1555 2.14 LINK FE FE A 402 O HOH A 502 1555 1555 2.26 LINK FE FE A 403 O2 SIN A 405 1555 1555 2.43 LINK FE FE A 403 N3 IMD A 407 1555 1555 1.77 LINK FE FE A 403 O HOH A 502 1555 1555 1.73 LINK OE2 GLU B 185 FE FE B 403 1555 1555 2.79 LINK NE2 HIS B 189 FE FE B 403 1555 1555 2.04 LINK OD1 ASP B 222 FE FE B 401 1555 1555 2.14 LINK OD2 ASP B 222 FE FE B 402 1555 1555 2.36 LINK NE2 HIS B 250 FE FE B 401 1555 1555 2.19 LINK NE2 HIS B 276 FE FE B 401 1555 1555 2.14 LINK NE2 HIS B 277 FE FE B 401 1555 1555 2.05 LINK OD1 ASP B 305 FE FE B 403 1555 1555 2.15 LINK FE FE B 401 O4 SIN B 405 1555 1555 2.48 LINK FE FE B 401 O HOH B 501 1555 1555 1.86 LINK FE FE B 402 O3P 5GP B 404 1555 1555 2.30 LINK FE FE B 402 O4 SIN B 405 1555 1555 2.52 LINK FE FE B 402 O HOH B 501 1555 1555 2.01 LINK FE FE B 402 O HOH B 502 1555 1555 2.56 LINK FE FE B 403 O1P 5GP B 404 1555 1555 2.44 LINK FE FE B 403 O HOH B 502 1555 1555 1.90 CISPEP 1 TYR A 285 PRO A 286 0 5.52 CISPEP 2 TYR B 285 PRO B 286 0 6.64 SITE 1 AC1 7 ASP A 222 HIS A 250 HIS A 276 HIS A 277 SITE 2 AC1 7 FE A 402 SIN A 404 HOH A 501 SITE 1 AC2 10 GLU A 185 ASP A 222 LYS A 225 FE A 401 SITE 2 AC2 10 FE A 403 SIN A 404 SIN A 405 IMD A 407 SITE 3 AC2 10 HOH A 501 HOH A 502 SITE 1 AC3 8 GLU A 185 HIS A 189 ASP A 305 FE A 402 SITE 2 AC3 8 SIN A 405 IMD A 407 HOH A 502 HOH A 513 SITE 1 AC4 15 GLU A 185 ASP A 222 LYS A 225 LYS A 238 SITE 2 AC4 15 TRP A 244 MET A 247 HIS A 250 HIS A 277 SITE 3 AC4 15 TYR A 285 FE A 401 FE A 402 SIN A 405 SITE 4 AC4 15 HOH A 501 HOH A 510 HOH A 562 SITE 1 AC5 16 GLU A 185 HIS A 189 GLY A 237 LYS A 238 SITE 2 AC5 16 ASP A 305 ALA A 309 FE A 402 FE A 403 SITE 3 AC5 16 SIN A 404 HOH A 502 HOH A 503 HOH A 510 SITE 4 AC5 16 HOH A 513 HOH A 546 HOH A 554 HOH A 562 SITE 1 AC6 10 GLU A 275 GLU A 278 TRP A 280 ILE A 294 SITE 2 AC6 10 GLY A 298 ARG A 299 SER A 302 HIS A 336 SITE 3 AC6 10 PHE A 337 ASP A 338 SITE 1 AC7 10 GLU A 185 HIS A 189 ILE A 190 HIS A 221 SITE 2 AC7 10 ASP A 222 ASP A 305 FE A 402 FE A 403 SITE 3 AC7 10 HOH A 502 HOH A 506 SITE 1 AC8 7 ASP B 222 HIS B 250 HIS B 276 HIS B 277 SITE 2 AC8 7 FE B 402 SIN B 405 HOH B 501 SITE 1 AC9 9 GLU B 185 ASP B 222 LYS B 225 FE B 401 SITE 2 AC9 9 5GP B 404 SIN B 405 IMD B 407 HOH B 501 SITE 3 AC9 9 HOH B 502 SITE 1 BC1 7 GLU B 185 HIS B 189 HIS B 221 ASP B 305 SITE 2 BC1 7 5GP B 404 IMD B 407 HOH B 502 SITE 1 BC2 12 GLU B 185 HIS B 189 HIS B 277 ASP B 305 SITE 2 BC2 12 ALA B 309 ARG B 314 FE B 402 FE B 403 SITE 3 BC2 12 SIN B 405 IMD B 407 HOH B 504 HOH B 509 SITE 1 BC3 10 ASP B 222 LYS B 225 HIS B 250 HIS B 277 SITE 2 BC3 10 TYR B 285 FE B 401 FE B 402 5GP B 404 SITE 3 BC3 10 HOH B 501 HOH B 506 SITE 1 BC4 10 GLU B 275 GLU B 278 ILE B 294 GLY B 298 SITE 2 BC4 10 ARG B 299 SER B 302 ILE B 303 HIS B 336 SITE 3 BC4 10 PHE B 337 ASP B 338 SITE 1 BC5 11 GLU B 185 HIS B 189 ILE B 190 HIS B 221 SITE 2 BC5 11 ASP B 222 ASP B 305 FE B 402 FE B 403 SITE 3 BC5 11 5GP B 404 HOH B 502 HOH B 507 CRYST1 70.090 181.120 231.510 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014267 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005521 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004319 0.00000 MASTER 589 0 14 39 12 0 40 6 0 0 0 58 END