HEADER OXIDOREDUCTASE 13-AUG-13 4M87 TITLE CRYSTAL STRUCTURE OF ENOYL-ACYL CARRIER PROTEIN REDUCTASE (FABI) FROM TITLE 2 NEISSERIA MENINGITIDIS IN COMPLEX WITH NAD+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.3.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 272831; SOURCE 4 STRAIN: FAM18; SOURCE 5 GENE: FABI, NMC1834; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENOYL, ACYL CARRIER PROTEIN, ACP, NEISSERIA, ROSSMANN FOLD, KEYWDS 2 REDUCTASE, NAD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.D.NANSON,J.K.FORWOOD REVDAT 1 02-OCT-13 4M87 0 JRNL AUTH J.D.NANSON,J.K.FORWOOD JRNL TITL CRYSTAL STRUCTURE OF ENOYL-ACYL CARRIER PROTEIN REDUCTASE JRNL TITL 2 (FABI) FROM NEISSERIA MENINGITIDIS IN COMPLEX WITH NAD+ JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1468 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1943 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.1740 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.1950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3752 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.236 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.474 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3904 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3754 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5281 ; 1.249 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8614 ; 0.901 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 500 ; 5.609 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;30.027 ;23.526 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 646 ;12.189 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;13.938 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 601 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4415 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 883 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2009 ; 0.908 ; 1.990 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2008 ; 0.905 ; 1.988 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2506 ; 1.543 ; 2.978 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2507 ; 1.544 ; 2.979 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1893 ; 1.324 ; 2.267 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1894 ; 1.324 ; 2.268 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2776 ; 2.267 ; 3.319 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4593 ; 4.451 ;16.901 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4501 ; 4.278 ;16.639 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 258 B 2 258 14107 0.11 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 30.2815 -31.6941 -1.4627 REMARK 3 T TENSOR REMARK 3 T11: 0.0386 T22: 0.0291 REMARK 3 T33: 0.0216 T12: -0.0274 REMARK 3 T13: -0.0043 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.0958 L22: 0.1663 REMARK 3 L33: 0.4929 L12: -0.0541 REMARK 3 L13: 0.0280 L23: -0.1063 REMARK 3 S TENSOR REMARK 3 S11: -0.0369 S12: 0.0311 S13: 0.0304 REMARK 3 S21: -0.0157 S22: -0.0225 S23: -0.0111 REMARK 3 S31: 0.0180 S32: 0.0129 S33: 0.0594 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 258 REMARK 3 ORIGIN FOR THE GROUP (A): 36.2438 -56.4422 16.3473 REMARK 3 T TENSOR REMARK 3 T11: 0.0698 T22: 0.0033 REMARK 3 T33: 0.0398 T12: 0.0027 REMARK 3 T13: 0.0377 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.3015 L22: 0.0818 REMARK 3 L33: 0.4208 L12: -0.0766 REMARK 3 L13: -0.0403 L23: 0.0384 REMARK 3 S TENSOR REMARK 3 S11: -0.0349 S12: -0.0241 S13: -0.0288 REMARK 3 S21: -0.0249 S22: -0.0025 S23: -0.0013 REMARK 3 S31: 0.1144 S32: -0.0063 S33: 0.0375 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4M87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-13. REMARK 100 THE RCSB ID CODE IS RCSB081588. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SILICON DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29052 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 35.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.3M AMMONIUM SULFATE, 12.5% GLYCEROL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.28000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 160.56000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 120.42000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 200.70000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.14000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.28000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 160.56000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 200.70000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 120.42000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.14000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 45.55000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -78.89491 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 40.14000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 259 REMARK 465 GLU A 260 REMARK 465 GLY A 261 REMARK 465 MET B 1 REMARK 465 LYS B 194 REMARK 465 THR B 195 REMARK 465 LEU B 196 REMARK 465 ALA B 197 REMARK 465 ALA B 198 REMARK 465 SER B 199 REMARK 465 GLY B 200 REMARK 465 ILE B 201 REMARK 465 ALA B 202 REMARK 465 ASP B 203 REMARK 465 PHE B 204 REMARK 465 THR B 259 REMARK 465 GLU B 260 REMARK 465 GLY B 261 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 156 -27.52 77.98 REMARK 500 ASN A 158 -122.32 52.28 REMARK 500 VAL A 248 74.04 -111.76 REMARK 500 ASN B 156 -27.87 79.87 REMARK 500 ASN B 158 -123.79 52.73 REMARK 500 VAL B 248 74.43 -111.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M86 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN UNBOUND FORM REMARK 900 RELATED ID: 4M89 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH NAD+ AND TRICLOSAN DBREF 4M87 A 1 261 UNP A1KVU8 A1KVU8_NEIMF 1 261 DBREF 4M87 B 1 261 UNP A1KVU8 A1KVU8_NEIMF 1 261 SEQRES 1 A 261 MET GLY PHE LEU GLN GLY LYS LYS ILE LEU ILE THR GLY SEQRES 2 A 261 MET ILE SER GLU ARG SER ILE ALA TYR GLY ILE ALA LYS SEQRES 3 A 261 ALA CYS ARG GLU GLN GLY ALA GLU LEU ALA PHE THR TYR SEQRES 4 A 261 VAL VAL ASP LYS LEU GLU GLU ARG VAL ARG LYS MET ALA SEQRES 5 A 261 ALA GLU LEU ASP SER GLU LEU VAL PHE ARG CYS ASP VAL SEQRES 6 A 261 ALA SER ASP ASP GLU ILE ASN GLN VAL PHE ALA ASP LEU SEQRES 7 A 261 GLY LYS HIS TRP ASP GLY LEU ASP GLY LEU VAL HIS SER SEQRES 8 A 261 ILE GLY PHE ALA PRO LYS GLU ALA LEU SER GLY ASP PHE SEQRES 9 A 261 LEU ASP SER ILE SER ARG GLU ALA PHE ASN THR ALA HIS SEQRES 10 A 261 GLU ILE SER ALA TYR SER LEU PRO ALA LEU ALA LYS ALA SEQRES 11 A 261 ALA ARG PRO MET MET ARG GLY ARG ASN SER ALA ILE VAL SEQRES 12 A 261 ALA LEU SER TYR LEU GLY ALA VAL ARG ALA ILE PRO ASN SEQRES 13 A 261 TYR ASN VAL MET GLY MET ALA LYS ALA SER LEU GLU ALA SEQRES 14 A 261 GLY ILE ARG PHE THR ALA ALA CYS LEU GLY LYS GLU GLY SEQRES 15 A 261 ILE ARG CYS ASN GLY ILE SER ALA GLY PRO ILE LYS THR SEQRES 16 A 261 LEU ALA ALA SER GLY ILE ALA ASP PHE GLY LYS LEU LEU SEQRES 17 A 261 GLY HIS VAL ALA ALA HIS ASN PRO LEU ARG ARG ASN VAL SEQRES 18 A 261 THR ILE GLU GLU VAL GLY ASN THR ALA ALA PHE LEU LEU SEQRES 19 A 261 SER ASP LEU SER SER GLY ILE THR GLY GLU ILE THR TYR SEQRES 20 A 261 VAL ASP GLY GLY TYR SER ILE ASN ALA LEU SER THR GLU SEQRES 21 A 261 GLY SEQRES 1 B 261 MET GLY PHE LEU GLN GLY LYS LYS ILE LEU ILE THR GLY SEQRES 2 B 261 MET ILE SER GLU ARG SER ILE ALA TYR GLY ILE ALA LYS SEQRES 3 B 261 ALA CYS ARG GLU GLN GLY ALA GLU LEU ALA PHE THR TYR SEQRES 4 B 261 VAL VAL ASP LYS LEU GLU GLU ARG VAL ARG LYS MET ALA SEQRES 5 B 261 ALA GLU LEU ASP SER GLU LEU VAL PHE ARG CYS ASP VAL SEQRES 6 B 261 ALA SER ASP ASP GLU ILE ASN GLN VAL PHE ALA ASP LEU SEQRES 7 B 261 GLY LYS HIS TRP ASP GLY LEU ASP GLY LEU VAL HIS SER SEQRES 8 B 261 ILE GLY PHE ALA PRO LYS GLU ALA LEU SER GLY ASP PHE SEQRES 9 B 261 LEU ASP SER ILE SER ARG GLU ALA PHE ASN THR ALA HIS SEQRES 10 B 261 GLU ILE SER ALA TYR SER LEU PRO ALA LEU ALA LYS ALA SEQRES 11 B 261 ALA ARG PRO MET MET ARG GLY ARG ASN SER ALA ILE VAL SEQRES 12 B 261 ALA LEU SER TYR LEU GLY ALA VAL ARG ALA ILE PRO ASN SEQRES 13 B 261 TYR ASN VAL MET GLY MET ALA LYS ALA SER LEU GLU ALA SEQRES 14 B 261 GLY ILE ARG PHE THR ALA ALA CYS LEU GLY LYS GLU GLY SEQRES 15 B 261 ILE ARG CYS ASN GLY ILE SER ALA GLY PRO ILE LYS THR SEQRES 16 B 261 LEU ALA ALA SER GLY ILE ALA ASP PHE GLY LYS LEU LEU SEQRES 17 B 261 GLY HIS VAL ALA ALA HIS ASN PRO LEU ARG ARG ASN VAL SEQRES 18 B 261 THR ILE GLU GLU VAL GLY ASN THR ALA ALA PHE LEU LEU SEQRES 19 B 261 SER ASP LEU SER SER GLY ILE THR GLY GLU ILE THR TYR SEQRES 20 B 261 VAL ASP GLY GLY TYR SER ILE ASN ALA LEU SER THR GLU SEQRES 21 B 261 GLY HET NAD A 301 44 HET NAD B 301 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 HOH *260(H2 O) HELIX 1 1 SER A 19 GLN A 31 1 13 HELIX 2 2 VAL A 41 LYS A 43 5 3 HELIX 3 3 LEU A 44 LEU A 55 1 12 HELIX 4 4 SER A 67 GLY A 79 1 13 HELIX 5 5 PRO A 96 SER A 101 5 6 HELIX 6 6 ASP A 103 ILE A 108 1 6 HELIX 7 7 SER A 109 ALA A 121 1 13 HELIX 8 8 TYR A 122 ARG A 136 1 15 HELIX 9 9 TYR A 147 VAL A 151 5 5 HELIX 10 10 ASN A 158 GLY A 179 1 22 HELIX 11 11 ALA A 197 ILE A 201 5 5 HELIX 12 12 ASP A 203 ASN A 215 1 13 HELIX 13 13 THR A 222 SER A 235 1 14 HELIX 14 14 ASP A 236 SER A 239 5 4 HELIX 15 15 GLY A 251 ASN A 255 5 5 HELIX 16 16 SER B 19 GLN B 31 1 13 HELIX 17 17 VAL B 41 LYS B 43 5 3 HELIX 18 18 LEU B 44 LEU B 55 1 12 HELIX 19 19 SER B 67 GLY B 79 1 13 HELIX 20 20 PRO B 96 SER B 101 5 6 HELIX 21 21 ASP B 103 ILE B 108 1 6 HELIX 22 22 SER B 109 ALA B 121 1 13 HELIX 23 23 TYR B 122 ARG B 136 1 15 HELIX 24 24 TYR B 147 VAL B 151 5 5 HELIX 25 25 ASN B 158 GLY B 179 1 22 HELIX 26 26 LYS B 206 ASN B 215 1 10 HELIX 27 27 THR B 222 SER B 235 1 14 HELIX 28 28 ASP B 236 SER B 239 5 4 HELIX 29 29 GLY B 251 ASN B 255 5 5 SHEET 1 A 7 VAL A 60 ARG A 62 0 SHEET 2 A 7 GLU A 34 TYR A 39 1 N PHE A 37 O PHE A 61 SHEET 3 A 7 LYS A 8 ILE A 11 1 N ILE A 11 O ALA A 36 SHEET 4 A 7 GLY A 87 HIS A 90 1 O GLY A 87 N LEU A 10 SHEET 5 A 7 SER A 140 SER A 146 1 O VAL A 143 N HIS A 90 SHEET 6 A 7 ILE A 183 ALA A 190 1 O ILE A 188 N SER A 146 SHEET 7 A 7 ILE A 245 VAL A 248 1 O THR A 246 N GLY A 187 SHEET 1 B 7 VAL B 60 ARG B 62 0 SHEET 2 B 7 GLU B 34 TYR B 39 1 N PHE B 37 O PHE B 61 SHEET 3 B 7 LYS B 8 ILE B 11 1 N ILE B 11 O ALA B 36 SHEET 4 B 7 GLY B 87 HIS B 90 1 O GLY B 87 N LEU B 10 SHEET 5 B 7 SER B 140 SER B 146 1 O VAL B 143 N HIS B 90 SHEET 6 B 7 ILE B 183 ALA B 190 1 O ILE B 188 N SER B 146 SHEET 7 B 7 ILE B 245 VAL B 248 1 O THR B 246 N GLY B 187 SITE 1 AC1 30 GLY A 13 ILE A 15 SER A 19 ILE A 20 SITE 2 AC1 30 VAL A 40 CYS A 63 ASP A 64 VAL A 65 SITE 3 AC1 30 SER A 91 ILE A 92 GLY A 93 ILE A 119 SITE 4 AC1 30 LEU A 145 SER A 146 LYS A 164 ALA A 190 SITE 5 AC1 30 GLY A 191 PRO A 192 ILE A 193 THR A 195 SITE 6 AC1 30 LEU A 196 ALA A 197 HOH A 401 HOH A 404 SITE 7 AC1 30 HOH A 413 HOH A 426 HOH A 433 HOH A 434 SITE 8 AC1 30 HOH A 504 HOH A 533 SITE 1 AC2 26 GLY B 13 ILE B 15 SER B 19 ILE B 20 SITE 2 AC2 26 VAL B 40 CYS B 63 ASP B 64 VAL B 65 SITE 3 AC2 26 SER B 91 ILE B 92 GLY B 93 ILE B 119 SITE 4 AC2 26 LEU B 145 SER B 146 TYR B 147 LYS B 164 SITE 5 AC2 26 ALA B 190 GLY B 191 PRO B 192 ILE B 193 SITE 6 AC2 26 HOH B 411 HOH B 418 HOH B 422 HOH B 460 SITE 7 AC2 26 HOH B 475 HOH B 514 CRYST1 91.100 91.100 240.840 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010977 0.006338 0.000000 0.00000 SCALE2 0.000000 0.012675 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004152 0.00000 MASTER 376 0 2 29 14 0 15 6 0 0 0 42 END