HEADER TOXIN 07-AUG-13 4M4C TITLE CRYSTAL STRUCTURE OF RHODOSTOMIN ARGDP MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC METALLOPROTEINASE/DISINTEGRIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 408-475; COMPND 5 SYNONYM: SNAKE VENOM METALLOPROTEINASE RHODOSTOXIN, SVMP, HEMORRHAGIC COMPND 6 PROTEIN, DISINTEGRIN RHODOSTOMIN, RHO, DISINTEGRIN KISTRIN, PLATELET COMPND 7 AGGREGATION ACTIVATION INHIBITOR; COMPND 8 EC: 3.4.24.-; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALLOSELASMA RHODOSTOMA; SOURCE 3 ORGANISM_COMMON: MALAYAN PIT VIPER; SOURCE 4 ORGANISM_TAXID: 8717; SOURCE 5 GENE: RHOD; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X-33; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZALPHAA KEYWDS RHODOSTOMIN, DISINTEGRIN, INTEGRIN, ARGDP, LOSS-OF-FUNCTION, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.T.CHANG,W.Y.JENG,J.H.SHIU,C.Y.CHEN,W.J.CHUANG REVDAT 2 15-NOV-17 4M4C 1 REMARK REVDAT 1 13-AUG-14 4M4C 0 JRNL AUTH Y.T.CHANG,W.Y.JENG,J.H.SHIU,C.Y.CHEN,W.J.CHUANG JRNL TITL EFFECT OF C-TERMINAL PROLINE RESIDUE ADJACENT TO THE RGD JRNL TITL 2 MOTIF IN RHODOSTOMIN ON ITS ACTIVITY AND STRUCTURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 18626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2574 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1892 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.75000 REMARK 3 B22 (A**2) : 0.67000 REMARK 3 B33 (A**2) : 1.21000 REMARK 3 B12 (A**2) : -0.46000 REMARK 3 B13 (A**2) : -1.72000 REMARK 3 B23 (A**2) : 0.11000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.843 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.140 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1983 ; 0.027 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2687 ; 2.257 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 260 ; 6.725 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;42.307 ;23.556 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 320 ;16.427 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;14.256 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 262 ; 0.157 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1541 ; 0.012 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1302 ; 2.348 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2072 ; 3.838 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 681 ; 5.396 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 613 ; 8.320 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1983 ; 2.826 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 40 4 REMARK 3 1 B 4 B 40 4 REMARK 3 1 C 4 C 40 4 REMARK 3 1 D 4 D 40 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 263 ; 0.59 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 263 ; 0.57 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 263 ; 0.59 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 D (A): 263 ; 0.69 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 263 ; 7.33 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 263 ; 9.05 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 263 ; 7.23 ; 2.00 REMARK 3 MEDIUM THERMAL 1 D (A**2): 263 ; 9.40 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 67 REMARK 3 ORIGIN FOR THE GROUP (A): -7.0469 20.2086 -23.9661 REMARK 3 T TENSOR REMARK 3 T11: 0.0992 T22: 0.0469 REMARK 3 T33: 0.0448 T12: -0.0070 REMARK 3 T13: 0.0366 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.0766 L22: 1.1488 REMARK 3 L33: 1.1771 L12: -0.1214 REMARK 3 L13: -0.5201 L23: 0.5079 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: 0.0107 S13: -0.0137 REMARK 3 S21: -0.0187 S22: -0.0052 S23: 0.0049 REMARK 3 S31: 0.0261 S32: 0.0249 S33: 0.0223 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 67 REMARK 3 ORIGIN FOR THE GROUP (A): -13.8361 -1.5561 -32.9543 REMARK 3 T TENSOR REMARK 3 T11: 0.0950 T22: 0.0450 REMARK 3 T33: 0.0561 T12: 0.0025 REMARK 3 T13: 0.0413 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.0032 L22: 0.0693 REMARK 3 L33: 0.2994 L12: -0.0244 REMARK 3 L13: -0.1210 L23: 0.1416 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.0303 S13: -0.0022 REMARK 3 S21: -0.0110 S22: -0.0097 S23: -0.0127 REMARK 3 S31: 0.0239 S32: 0.0046 S33: 0.0088 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 67 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0274 -5.0702 -12.2658 REMARK 3 T TENSOR REMARK 3 T11: 0.0931 T22: 0.0518 REMARK 3 T33: 0.0526 T12: -0.0011 REMARK 3 T13: 0.0380 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.3245 L22: 0.2184 REMARK 3 L33: 0.2040 L12: 0.1052 REMARK 3 L13: -0.3135 L23: 0.0526 REMARK 3 S TENSOR REMARK 3 S11: -0.0031 S12: 0.0160 S13: 0.0304 REMARK 3 S21: -0.0299 S22: 0.0149 S23: -0.0128 REMARK 3 S31: -0.0141 S32: -0.0391 S33: -0.0118 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 67 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0915 9.4864 -3.3522 REMARK 3 T TENSOR REMARK 3 T11: 0.1026 T22: 0.0463 REMARK 3 T33: 0.0562 T12: -0.0017 REMARK 3 T13: 0.0409 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: -0.0753 L22: 0.2185 REMARK 3 L33: 0.0887 L12: 0.1927 REMARK 3 L13: -0.0385 L23: -0.1385 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: 0.0138 S13: 0.0216 REMARK 3 S21: 0.0316 S22: 0.0170 S23: 0.0296 REMARK 3 S31: 0.0042 S32: 0.0193 S33: -0.0305 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4M4C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97622 REMARK 200 MONOCHROMATOR : HORIZONTALLY FOCUSING SINGLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : VERTICALLY FOCUSING MIRROR, REMARK 200 HORIZONTALLY FOCUSING SINGLE REMARK 200 CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19633 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.45900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3UCI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000, 0.2M AMMONIUM SULFATE, 5% REMARK 280 PEG3350, 2% PEG200, 0.5% 2-PROPANOL(EXTERNAL) , PH 8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LYS A 2 REMARK 465 HIS A 68 REMARK 465 GLY B 1 REMARK 465 LYS B 2 REMARK 465 HIS B 68 REMARK 465 GLY C 1 REMARK 465 LYS C 2 REMARK 465 HIS C 68 REMARK 465 GLY D 1 REMARK 465 LYS D 2 REMARK 465 HIS D 68 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU C 10 NH1 ARG D 49 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 51 NH2 ARG C 56 1554 1.86 REMARK 500 OE2 GLU A 10 OE1 GLU C 29 1565 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 34 CG GLU B 34 CD 0.143 REMARK 500 ARG D 22 CB ARG D 22 CG -0.166 REMARK 500 CYS D 64 CB CYS D 64 SG 0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 56 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP C 15 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 36 6.18 80.12 REMARK 500 CYS B 36 7.27 80.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 102 DBREF 4M4C A 1 68 UNP P30403 VM2RH_CALRH 408 475 DBREF 4M4C B 1 68 UNP P30403 VM2RH_CALRH 408 475 DBREF 4M4C C 1 68 UNP P30403 VM2RH_CALRH 408 475 DBREF 4M4C D 1 68 UNP P30403 VM2RH_CALRH 408 475 SEQADV 4M4C ALA A 48 UNP P30403 PRO 455 ENGINEERED MUTATION SEQADV 4M4C PRO A 52 UNP P30403 MET 459 ENGINEERED MUTATION SEQADV 4M4C ALA B 48 UNP P30403 PRO 455 ENGINEERED MUTATION SEQADV 4M4C PRO B 52 UNP P30403 MET 459 ENGINEERED MUTATION SEQADV 4M4C ALA C 48 UNP P30403 PRO 455 ENGINEERED MUTATION SEQADV 4M4C PRO C 52 UNP P30403 MET 459 ENGINEERED MUTATION SEQADV 4M4C ALA D 48 UNP P30403 PRO 455 ENGINEERED MUTATION SEQADV 4M4C PRO D 52 UNP P30403 MET 459 ENGINEERED MUTATION SEQRES 1 A 68 GLY LYS GLU CYS ASP CYS SER SER PRO GLU ASN PRO CYS SEQRES 2 A 68 CYS ASP ALA ALA THR CYS LYS LEU ARG PRO GLY ALA GLN SEQRES 3 A 68 CYS GLY GLU GLY LEU CYS CYS GLU GLN CYS LYS PHE SER SEQRES 4 A 68 ARG ALA GLY LYS ILE CYS ARG ILE ALA ARG GLY ASP PRO SEQRES 5 A 68 PRO ASP ASP ARG CYS THR GLY GLN SER ALA ASP CYS PRO SEQRES 6 A 68 ARG TYR HIS SEQRES 1 B 68 GLY LYS GLU CYS ASP CYS SER SER PRO GLU ASN PRO CYS SEQRES 2 B 68 CYS ASP ALA ALA THR CYS LYS LEU ARG PRO GLY ALA GLN SEQRES 3 B 68 CYS GLY GLU GLY LEU CYS CYS GLU GLN CYS LYS PHE SER SEQRES 4 B 68 ARG ALA GLY LYS ILE CYS ARG ILE ALA ARG GLY ASP PRO SEQRES 5 B 68 PRO ASP ASP ARG CYS THR GLY GLN SER ALA ASP CYS PRO SEQRES 6 B 68 ARG TYR HIS SEQRES 1 C 68 GLY LYS GLU CYS ASP CYS SER SER PRO GLU ASN PRO CYS SEQRES 2 C 68 CYS ASP ALA ALA THR CYS LYS LEU ARG PRO GLY ALA GLN SEQRES 3 C 68 CYS GLY GLU GLY LEU CYS CYS GLU GLN CYS LYS PHE SER SEQRES 4 C 68 ARG ALA GLY LYS ILE CYS ARG ILE ALA ARG GLY ASP PRO SEQRES 5 C 68 PRO ASP ASP ARG CYS THR GLY GLN SER ALA ASP CYS PRO SEQRES 6 C 68 ARG TYR HIS SEQRES 1 D 68 GLY LYS GLU CYS ASP CYS SER SER PRO GLU ASN PRO CYS SEQRES 2 D 68 CYS ASP ALA ALA THR CYS LYS LEU ARG PRO GLY ALA GLN SEQRES 3 D 68 CYS GLY GLU GLY LEU CYS CYS GLU GLN CYS LYS PHE SER SEQRES 4 D 68 ARG ALA GLY LYS ILE CYS ARG ILE ALA ARG GLY ASP PRO SEQRES 5 D 68 PRO ASP ASP ARG CYS THR GLY GLN SER ALA ASP CYS PRO SEQRES 6 D 68 ARG TYR HIS HET SO4 B 101 5 HET SO4 B 102 5 HET SO4 C 101 5 HET SO4 C 102 5 HET SO4 D 101 5 HET SO4 D 102 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 6(O4 S 2-) FORMUL 11 HOH *100(H2 O) SHEET 1 A 2 CYS A 33 GLU A 34 0 SHEET 2 A 2 LYS A 37 PHE A 38 -1 O LYS A 37 N GLU A 34 SHEET 1 B 2 ILE A 44 ILE A 47 0 SHEET 2 B 2 ASP A 54 ARG A 56 -1 O ASP A 55 N CYS A 45 SHEET 1 C 2 CYS B 33 GLU B 34 0 SHEET 2 C 2 LYS B 37 PHE B 38 -1 O LYS B 37 N GLU B 34 SHEET 1 D 2 ILE B 44 ILE B 47 0 SHEET 2 D 2 ASP B 54 ARG B 56 -1 O ASP B 55 N ARG B 46 SHEET 1 E 2 CYS C 14 ASP C 15 0 SHEET 2 E 2 LYS C 20 LEU C 21 -1 O LYS C 20 N ASP C 15 SHEET 1 F 2 CYS C 33 GLU C 34 0 SHEET 2 F 2 LYS C 37 PHE C 38 -1 O LYS C 37 N GLU C 34 SHEET 1 G 2 ILE C 44 ARG C 46 0 SHEET 2 G 2 ASP C 55 ARG C 56 -1 O ASP C 55 N CYS C 45 SHEET 1 H 2 CYS D 14 ASP D 15 0 SHEET 2 H 2 LYS D 20 LEU D 21 -1 O LYS D 20 N ASP D 15 SHEET 1 I 2 CYS D 33 GLU D 34 0 SHEET 2 I 2 LYS D 37 PHE D 38 -1 O LYS D 37 N GLU D 34 SHEET 1 J 2 ILE D 44 ARG D 46 0 SHEET 2 J 2 ASP D 55 ARG D 56 -1 O ASP D 55 N CYS D 45 SSBOND 1 CYS A 4 CYS A 19 1555 1555 2.07 SSBOND 2 CYS A 6 CYS A 14 1555 1555 2.04 SSBOND 3 CYS A 13 CYS A 36 1555 1555 2.02 SSBOND 4 CYS A 27 CYS A 33 1555 1555 2.14 SSBOND 5 CYS A 32 CYS A 57 1555 1555 2.11 SSBOND 6 CYS A 45 CYS A 64 1555 1555 2.02 SSBOND 7 CYS B 4 CYS B 19 1555 1555 2.10 SSBOND 8 CYS B 6 CYS B 14 1555 1555 2.03 SSBOND 9 CYS B 13 CYS B 36 1555 1555 2.07 SSBOND 10 CYS B 27 CYS B 33 1555 1555 2.12 SSBOND 11 CYS B 32 CYS B 57 1555 1555 2.09 SSBOND 12 CYS B 45 CYS B 64 1555 1555 1.97 SSBOND 13 CYS C 4 CYS C 19 1555 1555 2.03 SSBOND 14 CYS C 6 CYS C 14 1555 1555 2.01 SSBOND 15 CYS C 13 CYS C 36 1555 1555 1.99 SSBOND 16 CYS C 27 CYS C 33 1555 1555 2.18 SSBOND 17 CYS C 32 CYS C 57 1555 1555 2.04 SSBOND 18 CYS C 45 CYS C 64 1555 1555 2.02 SSBOND 19 CYS D 4 CYS D 19 1555 1555 2.07 SSBOND 20 CYS D 6 CYS D 14 1555 1555 2.05 SSBOND 21 CYS D 13 CYS D 36 1555 1555 2.05 SSBOND 22 CYS D 27 CYS D 33 1555 1555 2.22 SSBOND 23 CYS D 32 CYS D 57 1555 1555 2.05 SSBOND 24 CYS D 45 CYS D 64 1555 1555 2.05 CISPEP 1 ASP A 51 PRO A 52 0 -14.14 CISPEP 2 ASP A 51 PRO A 52 0 -16.70 CISPEP 3 ASP B 51 PRO B 52 0 -2.13 CISPEP 4 PRO C 52 PRO C 53 0 3.69 CISPEP 5 PRO D 52 PRO D 53 0 5.56 SITE 1 AC1 2 TYR A 67 ARG B 40 SITE 1 AC2 5 GLY B 30 LEU B 31 ARG B 46 ASP B 63 SITE 2 AC2 5 CYS B 64 SITE 1 AC3 5 ARG C 46 ALA C 48 ARG C 49 GLY C 50 SITE 2 AC3 5 ASP C 51 SITE 1 AC4 5 LYS B 43 HOH B 212 ASP C 15 ALA C 16 SITE 2 AC4 5 ARG C 22 SITE 1 AC5 5 ARG D 46 ALA D 48 ARG D 49 GLY D 50 SITE 2 AC5 5 ASP D 51 SITE 1 AC6 5 PRO B 52 PRO D 53 ASP D 54 ARG D 56 SITE 2 AC6 5 HOH D 229 CRYST1 31.619 42.637 46.538 106.84 103.86 97.23 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031627 0.004012 0.009685 0.00000 SCALE2 0.000000 0.023642 0.008323 0.00000 SCALE3 0.000000 0.000000 0.023464 0.00000 MASTER 480 0 6 0 20 0 11 6 0 0 0 24 END