HEADER TRANSFERASE 05-AUG-13 4M2B TITLE CRYSTAL STRUCTURE OF L281D MUTANT OF UDP-GLUCOSE PYROPHOSPHORYLASE TITLE 2 FROM LEISHMANIA MAJOR IN COMPLEX WITH UDP-GLC COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLUCOSE PYROPHOSPHORYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 GENE: LMJF_18_0990, UGP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.FUEHRING,F.H.ROUTIER,A.-C.LAMERZ,P.BARUCH,R.GERARDY-SCHAHN, AUTHOR 2 R.FEDOROV REVDAT 2 19-FEB-14 4M2B 1 JRNL REVDAT 1 29-JAN-14 4M2B 0 JRNL AUTH J.FUEHRING,F.H.ROUTIER,A.-C.LAMERZ,P.BARUCH, JRNL AUTH 2 R.GERARDY-SCHAHN,R.FEDOROV JRNL TITL CATALYTIC MECHANISM AND ALLOSTERIC REGULATION OF UDP-GLUCOSE JRNL TITL 2 PYROPHOSPHORYLASE FROM LEISHMANIA MAJOR JRNL REF ACS CATALYSIS V.6329 2976 2013 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/CS4007777 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 23985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1204 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3730 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 393 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-13. REMARK 100 THE RCSB ID CODE IS RCSB081376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.816 REMARK 200 MONOCHROMATOR : A SINGLE GE(111) TRIANGULAR BENT REMARK 200 CRYSTAL. REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23985 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 23.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.15800 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 2OEG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 28% W/V PEG-MME -2000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K, PH 6.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.11500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.11500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.39500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.45000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.39500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.45000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.11500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.39500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.45000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.11500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.39500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.45000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 ASP A 4 REMARK 465 MET A 5 REMARK 465 GLN A 489 REMARK 465 GLN A 490 REMARK 465 SER A 491 REMARK 465 THR A 492 REMARK 465 ASN A 493 REMARK 465 LYS A 494 REMARK 465 MET A 495 REMARK 465 ARG A 496 REMARK 465 PRO A 497 REMARK 465 LEU A 498 REMARK 465 GLU A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 HIS A 502 REMARK 465 HIS A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 26 CD GLU A 26 OE1 -0.069 REMARK 500 HIS A 36 NE2 HIS A 36 CD2 -0.076 REMARK 500 GLU A 185 CD GLU A 185 OE2 -0.076 REMARK 500 GLU A 209 CD GLU A 209 OE1 -0.071 REMARK 500 GLU A 245 CD GLU A 245 OE1 -0.071 REMARK 500 HIS A 258 NE2 HIS A 258 CD2 -0.074 REMARK 500 HIS A 408 NE2 HIS A 408 CD2 -0.071 REMARK 500 HIS A 420 NE2 HIS A 420 CD2 -0.075 REMARK 500 HIS A 433 NE2 HIS A 433 CD2 -0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 263 N - CA - C ANGL. DEV. = 23.8 DEGREES REMARK 500 ASP A 270 CB - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 ASP A 270 N - CA - C ANGL. DEV. = -22.0 DEGREES REMARK 500 ARG A 373 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 SER A 469 CB - CA - C ANGL. DEV. = -16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 8 -51.26 -137.06 REMARK 500 ASN A 82 22.70 -148.97 REMARK 500 CYS A 121 -60.66 -129.33 REMARK 500 PRO A 189 44.57 -88.89 REMARK 500 LYS A 269 46.33 33.87 REMARK 500 ASP A 270 145.12 -172.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 7 LEU A 8 -49.66 REMARK 500 GLN A 272 PRO A 273 -89.09 REMARK 500 PRO A 273 ASP A 274 56.55 REMARK 500 ASP A 274 ALA A 275 128.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 56 24.8 L L OUTSIDE RANGE REMARK 500 THR A 87 23.5 L L OUTSIDE RANGE REMARK 500 SER A 141 23.8 L L OUTSIDE RANGE REMARK 500 HIS A 191 24.7 L L OUTSIDE RANGE REMARK 500 GLN A 262 23.9 L L OUTSIDE RANGE REMARK 500 THR A 263 20.1 L L OUTSIDE RANGE REMARK 500 VAL A 264 23.7 L L OUTSIDE RANGE REMARK 500 GLU A 319 21.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2303 DISTANCE = 5.19 ANGSTROMS REMARK 525 HOH A2307 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH A2309 DISTANCE = 5.58 ANGSTROMS REMARK 525 HOH A2313 DISTANCE = 8.20 ANGSTROMS REMARK 525 HOH A2385 DISTANCE = 5.11 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OEF RELATED DB: PDB REMARK 900 APO-FORM OF THE SAME ENZYME REMARK 900 RELATED ID: 2OEG RELATED DB: PDB REMARK 900 THE SAME ENZYME IN COMPLEX WITH THE UDP-GLUCOSE PRODUCT DBREF 4M2B A 1 494 UNP Q4QDU3 Q4QDU3_LEIMA 1 494 SEQADV 4M2B ASP A 281 UNP Q4QDU3 LEU 281 ENGINEERED MUTATION SEQADV 4M2B MET A 495 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M2B ARG A 496 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M2B PRO A 497 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M2B LEU A 498 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M2B GLU A 499 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M2B HIS A 500 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M2B HIS A 501 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M2B HIS A 502 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M2B HIS A 503 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M2B HIS A 504 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M2B HIS A 505 UNP Q4QDU3 EXPRESSION TAG SEQRES 1 A 505 MET GLU ASN ASP MET LYS SER LEU SER ALA ALA ALA GLN SEQRES 2 A 505 ALA CYS VAL LYS LYS MET ARG ASP ALA LYS VAL ASN GLU SEQRES 3 A 505 ALA CYS ILE ARG THR PHE ILE ALA GLN HIS VAL MET VAL SEQRES 4 A 505 SER LYS GLY GLU THR GLY SER ILE PRO ASP SER ALA ILE SEQRES 5 A 505 MET PRO VAL ASP SER LEU ASP ALA LEU ASP SER LEU THR SEQRES 6 A 505 ILE GLU CYS ASP ASN ALA VAL LEU GLN SER THR VAL VAL SEQRES 7 A 505 LEU LYS LEU ASN GLY GLY LEU GLY THR GLY MET GLY LEU SEQRES 8 A 505 CYS ASP ALA LYS THR LEU LEU GLU VAL LYS ASP GLY LYS SEQRES 9 A 505 THR PHE LEU ASP PHE THR ALA LEU GLN VAL GLN TYR LEU SEQRES 10 A 505 ARG GLN HIS CYS SER GLU HIS LEU ARG PHE MET LEU MET SEQRES 11 A 505 ASP SER PHE ASN THR SER ALA SER THR LYS SER PHE LEU SEQRES 12 A 505 LYS ALA ARG TYR PRO TRP LEU TYR GLN VAL PHE ASP SER SEQRES 13 A 505 GLU VAL GLU LEU MET GLN ASN GLN VAL PRO LYS ILE LEU SEQRES 14 A 505 GLN ASP THR LEU GLU PRO ALA ALA TRP ALA GLU ASN PRO SEQRES 15 A 505 ALA TYR GLU TRP ALA PRO PRO GLY HIS GLY ASP ILE TYR SEQRES 16 A 505 THR ALA LEU TYR GLY SER GLY LYS LEU GLN GLU LEU VAL SEQRES 17 A 505 GLU GLN GLY TYR ARG TYR MET PHE VAL SER ASN GLY ASP SEQRES 18 A 505 ASN LEU GLY ALA THR ILE ASP LYS ARG VAL LEU ALA TYR SEQRES 19 A 505 MET GLU LYS GLU LYS ILE ASP PHE LEU MET GLU VAL CYS SEQRES 20 A 505 ARG ARG THR GLU SER ASP LYS LYS GLY GLY HIS LEU ALA SEQRES 21 A 505 ARG GLN THR VAL TYR VAL LYS GLY LYS ASP GLY GLN PRO SEQRES 22 A 505 ASP ALA GLU LYS ARG VAL LEU ASP LEU ARG GLU SER ALA SEQRES 23 A 505 GLN CYS PRO LYS ALA ASP MET GLU SER PHE GLN ASP ILE SEQRES 24 A 505 ASN LYS TYR SER PHE PHE ASN THR ASN ASN LEU TRP ILE SEQRES 25 A 505 ARG LEU PRO VAL LEU LEU GLU THR MET GLN GLU HIS GLY SEQRES 26 A 505 GLY THR LEU PRO LEU PRO VAL ILE ARG ASN GLU LYS THR SEQRES 27 A 505 VAL ASP SER SER ASN SER ALA SER PRO LYS VAL TYR GLN SEQRES 28 A 505 LEU GLU THR ALA MET GLY ALA ALA ILE ALA MET PHE GLU SEQRES 29 A 505 SER ALA SER ALA ILE VAL VAL PRO ARG SER ARG PHE ALA SEQRES 30 A 505 PRO VAL LYS THR CYS ALA ASP LEU LEU ALA LEU ARG SER SEQRES 31 A 505 ASP ALA TYR VAL VAL THR ASP ASP PHE ARG LEU VAL LEU SEQRES 32 A 505 ASP ASP ARG CYS HIS GLY HIS PRO PRO VAL VAL ASP LEU SEQRES 33 A 505 ASP SER ALA HIS TYR LYS MET MET ASN GLY PHE GLU LYS SEQRES 34 A 505 LEU VAL GLN HIS GLY VAL PRO SER LEU VAL GLU CYS LYS SEQRES 35 A 505 ARG VAL THR VAL LYS GLY LEU VAL GLN PHE GLY ALA GLY SEQRES 36 A 505 ASN VAL LEU THR GLY THR VAL THR ILE GLU ASN THR ASP SEQRES 37 A 505 SER ALA SER ALA PHE VAL ILE PRO ASP GLY ALA LYS LEU SEQRES 38 A 505 ASN ASP THR THR ALA SER PRO GLN GLN SER THR ASN LYS SEQRES 39 A 505 MET ARG PRO LEU GLU HIS HIS HIS HIS HIS HIS HET UPG A1001 36 HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 2 UPG C15 H24 N2 O17 P2 FORMUL 3 HOH *393(H2 O) HELIX 1 1 SER A 9 ALA A 22 1 14 HELIX 2 2 ASN A 25 LYS A 41 1 17 HELIX 3 3 PRO A 48 ILE A 52 5 5 HELIX 4 4 ASP A 62 LEU A 64 5 3 HELIX 5 5 ASP A 69 SER A 75 1 7 HELIX 6 6 GLY A 86 GLY A 90 5 5 HELIX 7 7 ALA A 94 LEU A 97 5 4 HELIX 8 8 PHE A 106 CYS A 121 1 16 HELIX 9 9 THR A 135 TYR A 147 1 13 HELIX 10 10 TYR A 147 GLN A 152 1 6 HELIX 11 11 ASN A 181 TYR A 184 5 4 HELIX 12 12 GLY A 190 GLY A 192 5 3 HELIX 13 13 ASP A 193 SER A 201 1 9 HELIX 14 14 GLY A 202 GLN A 210 1 9 HELIX 15 15 ASP A 228 LYS A 239 1 12 HELIX 16 16 ALA A 286 CYS A 288 5 3 HELIX 17 17 PRO A 289 ALA A 291 5 3 HELIX 18 18 ASP A 292 GLN A 297 1 6 HELIX 19 19 LEU A 314 HIS A 324 1 11 HELIX 20 20 ALA A 355 PHE A 363 5 9 HELIX 21 21 PRO A 372 PHE A 376 5 5 HELIX 22 22 THR A 381 SER A 390 1 10 HELIX 23 23 ASP A 405 HIS A 408 5 4 HELIX 24 24 ASP A 417 LYS A 422 1 6 HELIX 25 25 MET A 423 VAL A 431 1 9 SHEET 1 A 8 ASP A 59 ALA A 60 0 SHEET 2 A 8 ALA A 366 VAL A 370 1 O VAL A 370 N ASP A 59 SHEET 3 A 8 PHE A 242 ARG A 248 1 N VAL A 246 O ILE A 369 SHEET 4 A 8 PHE A 304 ARG A 313 -1 O PHE A 305 N CYS A 247 SHEET 5 A 8 TYR A 214 SER A 218 -1 N VAL A 217 O LEU A 310 SHEET 6 A 8 THR A 76 LEU A 81 1 N VAL A 77 O TYR A 214 SHEET 7 A 8 ARG A 126 ASP A 131 1 O MET A 128 N VAL A 78 SHEET 8 A 8 GLU A 159 MET A 161 1 O LEU A 160 N LEU A 129 SHEET 1 B 2 GLU A 99 LYS A 101 0 SHEET 2 B 2 LYS A 104 THR A 105 -1 O LYS A 104 N VAL A 100 SHEET 1 C 2 VAL A 165 PRO A 166 0 SHEET 2 C 2 TRP A 186 ALA A 187 -1 O ALA A 187 N VAL A 165 SHEET 1 D 3 ILE A 168 LEU A 169 0 SHEET 2 D 3 LYS A 348 GLU A 353 -1 O TYR A 350 N ILE A 168 SHEET 3 D 3 ILE A 333 THR A 338 -1 N LYS A 337 O VAL A 349 SHEET 1 E 2 GLY A 257 ARG A 261 0 SHEET 2 E 2 LEU A 280 GLU A 284 -1 O ARG A 283 N HIS A 258 SHEET 1 F 2 TYR A 393 VAL A 395 0 SHEET 2 F 2 LEU A 401 LEU A 403 -1 O VAL A 402 N VAL A 394 SHEET 1 G 4 VAL A 413 LEU A 416 0 SHEET 2 G 4 CYS A 441 LYS A 447 1 O VAL A 444 N ASP A 415 SHEET 3 G 4 VAL A 457 GLU A 465 1 O VAL A 462 N ARG A 443 SHEET 4 G 4 LYS A 480 ASN A 482 1 O LEU A 481 N VAL A 457 SHEET 1 H 4 VAL A 413 LEU A 416 0 SHEET 2 H 4 CYS A 441 LYS A 447 1 O VAL A 444 N ASP A 415 SHEET 3 H 4 VAL A 457 GLU A 465 1 O VAL A 462 N ARG A 443 SHEET 4 H 4 THR A 485 ALA A 486 1 O ALA A 486 N GLU A 465 SHEET 1 I 2 VAL A 450 GLN A 451 0 SHEET 2 I 2 PHE A 473 VAL A 474 1 O PHE A 473 N GLN A 451 SSBOND 1 CYS A 92 CYS A 92 1555 3655 2.34 SITE 1 AC1 26 LEU A 81 GLY A 83 GLY A 84 MET A 130 SITE 2 AC1 26 GLN A 162 GLY A 190 HIS A 191 ASN A 219 SITE 3 AC1 26 GLY A 220 LYS A 255 GLY A 256 GLY A 257 SITE 4 AC1 26 GLU A 284 PHE A 305 ASN A 306 THR A 307 SITE 5 AC1 26 ASN A 308 LYS A 380 HOH A2048 HOH A2071 SITE 6 AC1 26 HOH A2076 HOH A2077 HOH A2117 HOH A2142 SITE 7 AC1 26 HOH A2158 HOH A2210 CRYST1 78.790 86.900 138.230 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012692 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011507 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007234 0.00000 MASTER 376 0 1 25 29 0 7 6 0 0 0 39 END