HEADER TRANSFERASE 01-AUG-13 4M0P TITLE CRYSTAL STRUCTURE OF HUMAN PRS1 M115T MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PPRIBP, PHOSPHORIBOSYL PYROPHOSPHATE SYNTHASE I, PRS-I; COMPND 5 EC: 2.7.6.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRPS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PRS1, PRPP SYNTHESIS ENZYME, ATP R5P, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.CHEN,M.TENG,X.LI REVDAT 2 25-MAR-15 4M0P 1 JRNL REVDAT 1 04-FEB-15 4M0P 0 JRNL AUTH P.CHEN,Z.LIU,X.WANG,J.PENG,Q.SUN,J.LI,M.WANG,L.NIU,Z.ZHANG, JRNL AUTH 2 G.CAI,M.TENG,X.LI JRNL TITL CRYSTAL AND EM STRUCTURES OF HUMAN PHOSPHORIBOSYL JRNL TITL 2 PYROPHOSPHATE SYNTHASE I (PRS1) PROVIDE NOVEL INSIGHTS INTO JRNL TITL 3 THE DISEASE-ASSOCIATED MUTATIONS JRNL REF PLOS ONE V. 10 20304 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 25781187 JRNL DOI 10.1371/JOURNAL.PONE.0120304 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 36190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1893 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2604 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4669 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.02000 REMARK 3 B22 (A**2) : 4.02000 REMARK 3 B33 (A**2) : -8.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.041 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.031 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4754 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6436 ; 1.144 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 606 ; 5.403 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;36.889 ;24.523 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 842 ;14.830 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;16.923 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 765 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3470 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3034 ; 0.783 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4908 ; 1.695 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1720 ; 2.888 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1528 ; 3.273 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.673 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.327 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4M0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-13. REMARK 100 THE RCSB ID CODE IS RCSB081318. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38116 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 49.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.1, VAPOR DIFFUSION, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 85.04000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.09787 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.54133 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 85.04000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 49.09787 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.54133 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 85.04000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 49.09787 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.54133 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 98.19573 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 41.08267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 98.19573 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 41.08267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 98.19573 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 41.08267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -436.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ARG A 196 REMARK 465 LYS A 197 REMARK 465 LYS A 198 REMARK 465 ALA A 199 REMARK 465 ASN A 200 REMARK 465 GLU A 201 REMARK 465 VAL A 202 REMARK 465 SER A 314 REMARK 465 HIS A 315 REMARK 465 VAL A 316 REMARK 465 PRO A 317 REMARK 465 LEU A 318 REMARK 465 LEU A 319 REMARK 465 GLU A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 ARG B 196 REMARK 465 LYS B 197 REMARK 465 LYS B 198 REMARK 465 ALA B 199 REMARK 465 ASN B 200 REMARK 465 GLU B 201 REMARK 465 VAL B 202 REMARK 465 LEU B 318 REMARK 465 LEU B 319 REMARK 465 GLU B 320 REMARK 465 HIS B 321 REMARK 465 HIS B 322 REMARK 465 HIS B 323 REMARK 465 HIS B 324 REMARK 465 HIS B 325 REMARK 465 HIS B 326 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 LYS B 18 NZ REMARK 470 LYS B 34 CG CD CE NZ REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLY A 59 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS B 60 ND2 ASN B 66 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 11 -33.83 -136.01 REMARK 500 HIS A 12 92.86 -69.48 REMARK 500 ASN A 37 37.54 -99.17 REMARK 500 GLU A 161 38.18 -93.57 REMARK 500 ASP A 224 -82.54 -102.54 REMARK 500 ASN A 273 34.14 -92.17 REMARK 500 SER B 10 -116.49 60.90 REMARK 500 SER B 11 19.72 -156.22 REMARK 500 HIS B 12 62.61 -101.50 REMARK 500 ASN B 37 41.37 -107.42 REMARK 500 GLN B 97 67.03 -102.90 REMARK 500 ASP B 224 -72.33 -102.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 SER A 10 24.6 L L OUTSIDE RANGE REMARK 500 SER B 10 23.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LYG RELATED DB: PDB REMARK 900 RELATED ID: 4LZP RELATED DB: PDB REMARK 900 RELATED ID: 4LZO RELATED DB: PDB REMARK 900 RELATED ID: 4M0U RELATED DB: PDB DBREF 4M0P A 1 318 UNP P60891 PRPS1_HUMAN 1 318 DBREF 4M0P B 1 318 UNP P60891 PRPS1_HUMAN 1 318 SEQADV 4M0P THR A 115 UNP P60891 MET 115 ENGINEERED MUTATION SEQADV 4M0P LEU A 319 UNP P60891 EXPRESSION TAG SEQADV 4M0P GLU A 320 UNP P60891 EXPRESSION TAG SEQADV 4M0P HIS A 321 UNP P60891 EXPRESSION TAG SEQADV 4M0P HIS A 322 UNP P60891 EXPRESSION TAG SEQADV 4M0P HIS A 323 UNP P60891 EXPRESSION TAG SEQADV 4M0P HIS A 324 UNP P60891 EXPRESSION TAG SEQADV 4M0P HIS A 325 UNP P60891 EXPRESSION TAG SEQADV 4M0P HIS A 326 UNP P60891 EXPRESSION TAG SEQADV 4M0P THR B 115 UNP P60891 MET 115 ENGINEERED MUTATION SEQADV 4M0P LEU B 319 UNP P60891 EXPRESSION TAG SEQADV 4M0P GLU B 320 UNP P60891 EXPRESSION TAG SEQADV 4M0P HIS B 321 UNP P60891 EXPRESSION TAG SEQADV 4M0P HIS B 322 UNP P60891 EXPRESSION TAG SEQADV 4M0P HIS B 323 UNP P60891 EXPRESSION TAG SEQADV 4M0P HIS B 324 UNP P60891 EXPRESSION TAG SEQADV 4M0P HIS B 325 UNP P60891 EXPRESSION TAG SEQADV 4M0P HIS B 326 UNP P60891 EXPRESSION TAG SEQRES 1 A 326 MET PRO ASN ILE LYS ILE PHE SER GLY SER SER HIS GLN SEQRES 2 A 326 ASP LEU SER GLN LYS ILE ALA ASP ARG LEU GLY LEU GLU SEQRES 3 A 326 LEU GLY LYS VAL VAL THR LYS LYS PHE SER ASN GLN GLU SEQRES 4 A 326 THR CYS VAL GLU ILE GLY GLU SER VAL ARG GLY GLU ASP SEQRES 5 A 326 VAL TYR ILE VAL GLN SER GLY CYS GLY GLU ILE ASN ASP SEQRES 6 A 326 ASN LEU MET GLU LEU LEU ILE MET ILE ASN ALA CYS LYS SEQRES 7 A 326 ILE ALA SER ALA SER ARG VAL THR ALA VAL ILE PRO CYS SEQRES 8 A 326 PHE PRO TYR ALA ARG GLN ASP LYS LYS ASP LYS SER ARG SEQRES 9 A 326 ALA PRO ILE SER ALA LYS LEU VAL ALA ASN THR LEU SER SEQRES 10 A 326 VAL ALA GLY ALA ASP HIS ILE ILE THR MET ASP LEU HIS SEQRES 11 A 326 ALA SER GLN ILE GLN GLY PHE PHE ASP ILE PRO VAL ASP SEQRES 12 A 326 ASN LEU TYR ALA GLU PRO ALA VAL LEU LYS TRP ILE ARG SEQRES 13 A 326 GLU ASN ILE SER GLU TRP ARG ASN CYS THR ILE VAL SER SEQRES 14 A 326 PRO ASP ALA GLY GLY ALA LYS ARG VAL THR SER ILE ALA SEQRES 15 A 326 ASP ARG LEU ASN VAL ASP PHE ALA LEU ILE HIS LYS GLU SEQRES 16 A 326 ARG LYS LYS ALA ASN GLU VAL ASP ARG MET VAL LEU VAL SEQRES 17 A 326 GLY ASP VAL LYS ASP ARG VAL ALA ILE LEU VAL ASP ASP SEQRES 18 A 326 MET ALA ASP THR CYS GLY THR ILE CYS HIS ALA ALA ASP SEQRES 19 A 326 LYS LEU LEU SER ALA GLY ALA THR ARG VAL TYR ALA ILE SEQRES 20 A 326 LEU THR HIS GLY ILE PHE SER GLY PRO ALA ILE SER ARG SEQRES 21 A 326 ILE ASN ASN ALA CYS PHE GLU ALA VAL VAL VAL THR ASN SEQRES 22 A 326 THR ILE PRO GLN GLU ASP LYS MET LYS HIS CYS SER LYS SEQRES 23 A 326 ILE GLN VAL ILE ASP ILE SER MET ILE LEU ALA GLU ALA SEQRES 24 A 326 ILE ARG ARG THR HIS ASN GLY GLU SER VAL SER TYR LEU SEQRES 25 A 326 PHE SER HIS VAL PRO LEU LEU GLU HIS HIS HIS HIS HIS SEQRES 26 A 326 HIS SEQRES 1 B 326 MET PRO ASN ILE LYS ILE PHE SER GLY SER SER HIS GLN SEQRES 2 B 326 ASP LEU SER GLN LYS ILE ALA ASP ARG LEU GLY LEU GLU SEQRES 3 B 326 LEU GLY LYS VAL VAL THR LYS LYS PHE SER ASN GLN GLU SEQRES 4 B 326 THR CYS VAL GLU ILE GLY GLU SER VAL ARG GLY GLU ASP SEQRES 5 B 326 VAL TYR ILE VAL GLN SER GLY CYS GLY GLU ILE ASN ASP SEQRES 6 B 326 ASN LEU MET GLU LEU LEU ILE MET ILE ASN ALA CYS LYS SEQRES 7 B 326 ILE ALA SER ALA SER ARG VAL THR ALA VAL ILE PRO CYS SEQRES 8 B 326 PHE PRO TYR ALA ARG GLN ASP LYS LYS ASP LYS SER ARG SEQRES 9 B 326 ALA PRO ILE SER ALA LYS LEU VAL ALA ASN THR LEU SER SEQRES 10 B 326 VAL ALA GLY ALA ASP HIS ILE ILE THR MET ASP LEU HIS SEQRES 11 B 326 ALA SER GLN ILE GLN GLY PHE PHE ASP ILE PRO VAL ASP SEQRES 12 B 326 ASN LEU TYR ALA GLU PRO ALA VAL LEU LYS TRP ILE ARG SEQRES 13 B 326 GLU ASN ILE SER GLU TRP ARG ASN CYS THR ILE VAL SER SEQRES 14 B 326 PRO ASP ALA GLY GLY ALA LYS ARG VAL THR SER ILE ALA SEQRES 15 B 326 ASP ARG LEU ASN VAL ASP PHE ALA LEU ILE HIS LYS GLU SEQRES 16 B 326 ARG LYS LYS ALA ASN GLU VAL ASP ARG MET VAL LEU VAL SEQRES 17 B 326 GLY ASP VAL LYS ASP ARG VAL ALA ILE LEU VAL ASP ASP SEQRES 18 B 326 MET ALA ASP THR CYS GLY THR ILE CYS HIS ALA ALA ASP SEQRES 19 B 326 LYS LEU LEU SER ALA GLY ALA THR ARG VAL TYR ALA ILE SEQRES 20 B 326 LEU THR HIS GLY ILE PHE SER GLY PRO ALA ILE SER ARG SEQRES 21 B 326 ILE ASN ASN ALA CYS PHE GLU ALA VAL VAL VAL THR ASN SEQRES 22 B 326 THR ILE PRO GLN GLU ASP LYS MET LYS HIS CYS SER LYS SEQRES 23 B 326 ILE GLN VAL ILE ASP ILE SER MET ILE LEU ALA GLU ALA SEQRES 24 B 326 ILE ARG ARG THR HIS ASN GLY GLU SER VAL SER TYR LEU SEQRES 25 B 326 PHE SER HIS VAL PRO LEU LEU GLU HIS HIS HIS HIS HIS SEQRES 26 B 326 HIS HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 HOH *52(H2 O) HELIX 1 1 GLN A 13 LEU A 23 1 11 HELIX 2 2 GLU A 62 ALA A 80 1 19 HELIX 3 3 ILE A 107 GLY A 120 1 14 HELIX 4 4 ALA A 131 PHE A 138 5 8 HELIX 5 5 ALA A 147 ILE A 159 1 13 HELIX 6 6 GLU A 161 ASN A 164 5 4 HELIX 7 7 ASP A 171 GLY A 173 5 3 HELIX 8 8 GLY A 174 ASN A 186 1 13 HELIX 9 9 CYS A 226 ALA A 239 1 14 HELIX 10 10 PRO A 256 ASN A 263 1 8 HELIX 11 11 GLN A 277 HIS A 283 1 7 HELIX 12 12 ILE A 292 GLY A 306 1 15 HELIX 13 13 VAL A 309 PHE A 313 5 5 HELIX 14 14 GLN B 13 LEU B 23 1 11 HELIX 15 15 GLU B 62 ALA B 80 1 19 HELIX 16 16 ILE B 107 GLY B 120 1 14 HELIX 17 17 ALA B 131 PHE B 138 5 8 HELIX 18 18 ALA B 147 ILE B 159 1 13 HELIX 19 19 GLU B 161 ASN B 164 5 4 HELIX 20 20 ASP B 171 GLY B 173 5 3 HELIX 21 21 GLY B 174 ASN B 186 1 13 HELIX 22 22 CYS B 226 ALA B 239 1 14 HELIX 23 23 PRO B 256 ALA B 264 1 9 HELIX 24 24 GLN B 277 HIS B 283 1 7 HELIX 25 25 ILE B 292 GLY B 306 1 15 HELIX 26 26 VAL B 309 SER B 314 5 6 SHEET 1 A 5 ILE A 4 SER A 8 0 SHEET 2 A 5 ASP A 52 VAL A 56 1 O TYR A 54 N LYS A 5 SHEET 3 A 5 ARG A 84 ILE A 89 1 O VAL A 88 N ILE A 55 SHEET 4 A 5 HIS A 123 MET A 127 1 O ILE A 125 N ILE A 89 SHEET 5 A 5 VAL A 142 LEU A 145 1 O LEU A 145 N THR A 126 SHEET 1 B 2 VAL A 30 LYS A 34 0 SHEET 2 B 2 THR A 40 ILE A 44 -1 O CYS A 41 N LYS A 33 SHEET 1 C 7 MET A 205 VAL A 208 0 SHEET 2 C 7 ASP A 188 LYS A 194 -1 N HIS A 193 O VAL A 206 SHEET 3 C 7 THR A 166 SER A 169 1 N SER A 169 O ILE A 192 SHEET 4 C 7 ALA A 216 ALA A 223 1 O ILE A 217 N VAL A 168 SHEET 5 C 7 VAL A 244 GLY A 251 1 O ILE A 247 N LEU A 218 SHEET 6 C 7 ALA A 268 THR A 272 1 O VAL A 270 N LEU A 248 SHEET 7 C 7 ILE A 287 ILE A 290 1 O ILE A 290 N VAL A 271 SHEET 1 D 5 ILE B 4 SER B 8 0 SHEET 2 D 5 ASP B 52 VAL B 56 1 O TYR B 54 N LYS B 5 SHEET 3 D 5 ARG B 84 ILE B 89 1 O VAL B 88 N ILE B 55 SHEET 4 D 5 HIS B 123 MET B 127 1 O ILE B 125 N ALA B 87 SHEET 5 D 5 VAL B 142 LEU B 145 1 O LEU B 145 N THR B 126 SHEET 1 E 2 VAL B 30 LYS B 34 0 SHEET 2 E 2 THR B 40 ILE B 44 -1 O CYS B 41 N LYS B 33 SHEET 1 F 7 MET B 205 VAL B 208 0 SHEET 2 F 7 ASP B 188 LYS B 194 -1 N HIS B 193 O VAL B 206 SHEET 3 F 7 THR B 166 SER B 169 1 N ILE B 167 O ASP B 188 SHEET 4 F 7 VAL B 215 ALA B 223 1 O ILE B 217 N VAL B 168 SHEET 5 F 7 ARG B 243 GLY B 251 1 O TYR B 245 N LEU B 218 SHEET 6 F 7 PHE B 266 THR B 272 1 O VAL B 270 N ALA B 246 SHEET 7 F 7 ILE B 287 ILE B 290 1 O ILE B 290 N VAL B 271 SITE 1 AC1 7 SER A 47 ARG A 49 SER A 308 VAL A 309 SITE 2 AC1 7 SER A 310 HOH A1111 ARG B 104 SITE 1 AC2 4 ASP A 224 THR A 225 CYS A 226 THR A 228 SITE 1 AC3 8 SER A 132 GLN A 135 ASN A 144 TYR A 146 SITE 2 AC3 8 HOH A1102 LYS B 100 ASP B 101 LYS B 102 SITE 1 AC4 7 ARG A 104 SER B 47 ARG B 49 SER B 308 SITE 2 AC4 7 VAL B 309 SER B 310 HOH B 511 SITE 1 AC5 6 ASP B 224 THR B 225 CYS B 226 GLY B 227 SITE 2 AC5 6 THR B 228 HOH B 512 SITE 1 AC6 9 LYS A 99 LYS A 100 ASP A 101 LYS A 102 SITE 2 AC6 9 SER B 132 GLN B 135 ASN B 144 TYR B 146 SITE 3 AC6 9 HOH B 504 CRYST1 170.080 170.080 61.624 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005880 0.003395 0.000000 0.00000 SCALE2 0.000000 0.006789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016227 0.00000 MASTER 426 0 6 26 28 0 12 6 0 0 0 52 END