HEADER LYASE/LYASE INHIBITOR 25-JUL-13 4LV4 TITLE A NONCOMPETITIVE INHIBITOR FOR M. TUBERCULOSIS'S CLASS IIA FRUCTOSE 1, TITLE 2 6-BISPHOSPHATE ALDOLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FBP ALDOLASE, FBPA, FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE; COMPND 5 EC: 4.1.2.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: FBA, MT0379, MTCY13E10.25C, RV0363C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS CLASS II FRUCTOSE-1, 6-BISPHOSPHATE ALDOLASE, ZINC ENZYME, KEYWDS 2 MYCOBACTERIUM TUBERCULOSIS, DIHYDROXYACETONE, GLYCERALDEHYDE-3- KEYWDS 3 PHOSPHATE, ALDOL CONDENSATION, GLYCOLYSIS, LYASE, METAL-BINDING, 8- KEYWDS 4 HYDROXYQUINOLINE-2-CARBOXYLIC ACID, LYASE-LYASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.C.CAPODAGLI,S.D.PEGAN REVDAT 3 15-NOV-17 4LV4 1 REMARK REVDAT 2 29-JAN-14 4LV4 1 JRNL REVDAT 1 08-JAN-14 4LV4 0 JRNL AUTH G.C.CAPODAGLI,W.G.SEDHOM,M.JACKSON,K.A.AHRENDT,S.D.PEGAN JRNL TITL A NONCOMPETITIVE INHIBITOR FOR MYCOBACTERIUM TUBERCULOSIS'S JRNL TITL 2 CLASS IIA FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE. JRNL REF BIOCHEMISTRY V. 53 202 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 24325645 JRNL DOI 10.1021/BI401022B REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 35977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1876 - 4.8793 0.99 2805 154 0.1735 0.1882 REMARK 3 2 4.8793 - 3.8735 1.00 2710 140 0.1384 0.1698 REMARK 3 3 3.8735 - 3.3841 1.00 2660 153 0.1478 0.1487 REMARK 3 4 3.3841 - 3.0747 1.00 2691 133 0.1688 0.2047 REMARK 3 5 3.0747 - 2.8544 1.00 2630 152 0.1607 0.2110 REMARK 3 6 2.8544 - 2.6861 1.00 2662 149 0.1678 0.2050 REMARK 3 7 2.6861 - 2.5516 1.00 2625 152 0.1564 0.1910 REMARK 3 8 2.5516 - 2.4406 1.00 2680 119 0.1575 0.2032 REMARK 3 9 2.4406 - 2.3466 1.00 2627 135 0.1528 0.1843 REMARK 3 10 2.3466 - 2.2656 1.00 2633 143 0.1659 0.1999 REMARK 3 11 2.2656 - 2.1948 1.00 2620 128 0.2165 0.2984 REMARK 3 12 2.1948 - 2.1321 1.00 2658 125 0.1750 0.2152 REMARK 3 13 2.1321 - 2.0759 0.83 2177 116 0.1732 0.2029 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2568 REMARK 3 ANGLE : 1.060 3489 REMARK 3 CHIRALITY : 0.074 388 REMARK 3 PLANARITY : 0.004 453 REMARK 3 DIHEDRAL : 14.475 927 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36003 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.28500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: PDB ENTRY 4DEF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 300, 0.1 M SODIUM ACETATE, 2.5 REMARK 280 MM 8-HYDROXYQUINOLINE-2-CARBOXYLIC ACID, PH 4.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.27950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.46650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.59200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.27950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.46650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.59200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.27950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.46650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.59200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.27950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.46650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.59200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND, THIRD, AND FOURTH PARTS OF THE BIOLOGICAL REMARK 300 ASSEMBLY IS GENERATED BY THE TWO FOLD AXES: -X, -Y+1, Z ; X-1/2, -Y+ REMARK 300 1/2, Z+1/2; X, -Y+1, -Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 356.79900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 356.79900 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 586 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 167 REMARK 465 GLU A 168 REMARK 465 GLU A 169 REMARK 465 ASP A 170 REMARK 465 GLY A 171 REMARK 465 VAL A 172 REMARK 465 ALA A 173 REMARK 465 ASN A 174 REMARK 465 GLU A 175 REMARK 465 ILE A 176 REMARK 465 ASN A 177 REMARK 465 ASN A 210 REMARK 465 VAL A 211 REMARK 465 HIS A 212 REMARK 465 GLY A 213 REMARK 465 VAL A 214 REMARK 465 TYR A 215 REMARK 465 LYS A 216 REMARK 465 PRO A 217 REMARK 465 GLY A 218 REMARK 465 ASN A 219 REMARK 465 VAL A 220 REMARK 465 LYS A 221 REMARK 465 LEU A 222 REMARK 465 ARG A 223 REMARK 465 HIS A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 100 O HOH A 628 2.08 REMARK 500 O HOH A 626 O HOH A 698 2.11 REMARK 500 O HOH A 614 O HOH A 681 2.18 REMARK 500 O HOH A 622 O HOH A 773 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 65 -54.59 -125.34 REMARK 500 PRO A 87 40.50 -88.95 REMARK 500 HIS A 96 105.67 -9.35 REMARK 500 TYR A 105 -84.55 -144.27 REMARK 500 LYS A 259 54.11 -65.51 REMARK 500 SER A 260 -33.77 -161.37 REMARK 500 ASP A 276 -62.77 -142.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 8HC A 403 N05 REMARK 620 2 HIS A 96 NE2 127.2 REMARK 620 3 HIS A 252 ND1 128.9 103.9 REMARK 620 4 8HC A 403 O03 80.9 89.9 102.0 REMARK 620 5 8HC A 403 O12 74.8 103.0 95.1 155.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 344 ND1 REMARK 620 2 HIS A 346 NE2 118.7 REMARK 620 3 HOH A 538 O 90.2 86.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8HC A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DEF RELATED DB: PDB REMARK 900 RELATED ID: 4DEL RELATED DB: PDB REMARK 900 RELATED ID: 3EKL RELATED DB: PDB REMARK 900 RELATED ID: 3EKZ RELATED DB: PDB REMARK 900 RELATED ID: 3ELF RELATED DB: PDB REMARK 900 RELATED ID: 4A21 RELATED DB: PDB REMARK 900 RELATED ID: 4A22 RELATED DB: PDB DBREF 4LV4 A 1 344 UNP P67475 ALF_MYCTU 1 344 SEQADV 4LV4 HIS A 345 UNP P67475 EXPRESSION TAG SEQADV 4LV4 HIS A 346 UNP P67475 EXPRESSION TAG SEQADV 4LV4 HIS A 347 UNP P67475 EXPRESSION TAG SEQADV 4LV4 HIS A 348 UNP P67475 EXPRESSION TAG SEQADV 4LV4 HIS A 349 UNP P67475 EXPRESSION TAG SEQRES 1 A 349 MET PRO ILE ALA THR PRO GLU VAL TYR ALA GLU MET LEU SEQRES 2 A 349 GLY GLN ALA LYS GLN ASN SER TYR ALA PHE PRO ALA ILE SEQRES 3 A 349 ASN CYS THR SER SER GLU THR VAL ASN ALA ALA ILE LYS SEQRES 4 A 349 GLY PHE ALA ASP ALA GLY SER ASP GLY ILE ILE GLN PHE SEQRES 5 A 349 SER THR GLY GLY ALA GLU PHE GLY SER GLY LEU GLY VAL SEQRES 6 A 349 LYS ASP MET VAL THR GLY ALA VAL ALA LEU ALA GLU PHE SEQRES 7 A 349 THR HIS VAL ILE ALA ALA LYS TYR PRO VAL ASN VAL ALA SEQRES 8 A 349 LEU HIS THR ASP HIS CYS PRO LYS ASP LYS LEU ASP SER SEQRES 9 A 349 TYR VAL ARG PRO LEU LEU ALA ILE SER ALA GLN ARG VAL SEQRES 10 A 349 SER LYS GLY GLY ASN PRO LEU PHE GLN SER HIS MET TRP SEQRES 11 A 349 ASP GLY SER ALA VAL PRO ILE ASP GLU ASN LEU ALA ILE SEQRES 12 A 349 ALA GLN GLU LEU LEU LYS ALA ALA ALA ALA ALA LYS ILE SEQRES 13 A 349 ILE LEU GLU ILE GLU ILE GLY VAL VAL GLY GLY GLU GLU SEQRES 14 A 349 ASP GLY VAL ALA ASN GLU ILE ASN GLU LYS LEU TYR THR SEQRES 15 A 349 SER PRO GLU ASP PHE GLU LYS THR ILE GLU ALA LEU GLY SEQRES 16 A 349 ALA GLY GLU HIS GLY LYS TYR LEU LEU ALA ALA THR PHE SEQRES 17 A 349 GLY ASN VAL HIS GLY VAL TYR LYS PRO GLY ASN VAL LYS SEQRES 18 A 349 LEU ARG PRO ASP ILE LEU ALA GLN GLY GLN GLN VAL ALA SEQRES 19 A 349 ALA ALA LYS LEU GLY LEU PRO ALA ASP ALA LYS PRO PHE SEQRES 20 A 349 ASP PHE VAL PHE HIS GLY GLY SER GLY SER LEU LYS SER SEQRES 21 A 349 GLU ILE GLU GLU ALA LEU ARG TYR GLY VAL VAL LYS MET SEQRES 22 A 349 ASN VAL ASP THR ASP THR GLN TYR ALA PHE THR ARG PRO SEQRES 23 A 349 ILE ALA GLY HIS MET PHE THR ASN TYR ASP GLY VAL LEU SEQRES 24 A 349 LYS VAL ASP GLY GLU VAL GLY VAL LYS LYS VAL TYR ASP SEQRES 25 A 349 PRO ARG SER TYR LEU LYS LYS ALA GLU ALA SER MET SER SEQRES 26 A 349 GLN ARG VAL VAL GLN ALA CYS ASN ASP LEU HIS CYS ALA SEQRES 27 A 349 GLY LYS SER LEU THR HIS HIS HIS HIS HIS HIS HET ZN A 401 1 HET ZN A 402 1 HET 8HC A 403 20 HET ACT A 404 7 HET ACT A 405 7 HET 1PE A 406 38 HETNAM ZN ZINC ION HETNAM 8HC 8-HYDROXYQUINOLINE-2-CARBOXYLIC ACID HETNAM ACT ACETATE ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 2 ZN 2(ZN 2+) FORMUL 4 8HC C10 H7 N O3 FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 1PE C10 H22 O6 FORMUL 8 HOH *357(H2 O) HELIX 1 1 THR A 5 ASN A 19 1 15 HELIX 2 2 SER A 30 ALA A 44 1 15 HELIX 3 3 SER A 53 SER A 61 1 9 HELIX 4 4 ASP A 67 ALA A 84 1 18 HELIX 5 5 PRO A 98 SER A 104 5 7 HELIX 6 6 TYR A 105 LYS A 119 1 15 HELIX 7 7 PRO A 136 ALA A 154 1 19 HELIX 8 8 SER A 183 GLY A 195 1 13 HELIX 9 9 ASP A 225 LEU A 238 1 14 HELIX 10 10 SER A 260 TYR A 268 1 9 HELIX 11 11 ASP A 276 ASN A 294 1 19 HELIX 12 12 ASN A 294 LEU A 299 1 6 HELIX 13 13 VAL A 307 ASP A 312 1 6 HELIX 14 14 ASP A 312 LEU A 335 1 24 SHEET 1 A 9 PHE A 23 ASN A 27 0 SHEET 2 A 9 GLY A 48 PHE A 52 1 O ILE A 49 N ILE A 26 SHEET 3 A 9 VAL A 90 THR A 94 1 O ALA A 91 N ILE A 50 SHEET 4 A 9 SER A 127 ASP A 131 1 O MET A 129 N THR A 94 SHEET 5 A 9 ILE A 157 GLU A 161 1 O GLU A 159 N TRP A 130 SHEET 6 A 9 TYR A 202 ALA A 206 1 O LEU A 203 N LEU A 158 SHEET 7 A 9 PHE A 249 PHE A 251 1 O VAL A 250 N LEU A 204 SHEET 8 A 9 VAL A 270 VAL A 275 1 O LYS A 272 N PHE A 251 SHEET 9 A 9 PHE A 23 ASN A 27 1 N PHE A 23 O MET A 273 SHEET 1 B 2 VAL A 164 VAL A 165 0 SHEET 2 B 2 LEU A 180 TYR A 181 -1 O TYR A 181 N VAL A 164 LINK ZN ZN A 401 N05 8HC A 403 1555 1555 2.00 LINK NE2 HIS A 96 ZN ZN A 401 1555 1555 2.02 LINK ND1 HIS A 344 ZN ZN A 402 1555 1555 2.04 LINK NE2 HIS A 346 ZN ZN A 402 1555 1555 2.08 LINK ND1 HIS A 252 ZN ZN A 401 1555 1555 2.08 LINK ZN ZN A 401 O03 8HC A 403 1555 1555 2.09 LINK ZN ZN A 402 O HOH A 538 1555 1555 2.21 LINK ZN ZN A 401 O12 8HC A 403 1555 1555 2.23 SITE 1 AC1 3 HIS A 96 HIS A 252 8HC A 403 SITE 1 AC2 5 GLU A 198 HIS A 199 HIS A 344 HIS A 346 SITE 2 AC2 5 HOH A 538 SITE 1 AC3 7 HIS A 96 GLU A 161 GLU A 178 HIS A 252 SITE 2 AC3 7 ZN A 401 HOH A 533 HOH A 652 SITE 1 AC4 5 GLY A 197 LYS A 201 TYR A 202 ASP A 248 SITE 2 AC4 5 HOH A 568 SITE 1 AC5 2 VAL A 65 HOH A 787 SITE 1 AC6 4 LYS A 300 ASP A 302 VAL A 305 TYR A 311 CRYST1 60.559 118.933 165.184 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016513 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006054 0.00000 MASTER 370 0 6 14 11 0 9 6 0 0 0 27 END