HEADER ISOMERASE 23-JUL-13 4LTA TITLE THE CRYSTAL STRUCTURE OF THE P132R, Y133G MUTANT OF PYROCOCCUS TITLE 2 FURIOSUS PHOSPHOGLUCOSE ISOMERASE IN COMPLEX WITH MANGANESE AND 5- TITLE 3 PHOSPHO-D-ARABINONATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-6-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GPI, PHOSPHOGLUCOSE ISOMERASE, PGI, PHOSPHOHEXOSE ISOMERASE, COMPND 5 PHI; COMPND 6 EC: 5.3.1.9; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: ATCC 43587 / DSM 3638 / JCM 8422 / VC1; SOURCE 5 GENE: PGIA, PF0196; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24D KEYWDS CUPIN FOLD, ISOMERASE, GLUCOSE 6-PHOSPHATE AND FRUCTOSE 6-PHOSPHATE KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR P.J.BAKER,F.M.ALMOURFI REVDAT 2 24-JAN-18 4LTA 1 JRNL REVDAT 1 30-JUL-14 4LTA 0 JRNL AUTH P.J.BAKER,F.M.ALMOURFI,J.RAEDTS,H.-J.JOOSTEN,S.HENDRIKS, JRNL AUTH 2 S.W.M.KENGEN,W.R.HAGE,P.J.SCHAAP,S.E.SEDELNIKOVA, JRNL AUTH 3 J.VAN DER OOST JRNL TITL CORRELATED MUTATION ANALYSIS AS A TOOL FOR SMART LIBRARY JRNL TITL 2 DESIGN TO IMPROVE PROTEIN PERFORMANCE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1356 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1875 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3032 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.69000 REMARK 3 B22 (A**2) : -2.43000 REMARK 3 B33 (A**2) : 3.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.217 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.168 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.005 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3152 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4250 ; 1.417 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 6.479 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;32.896 ;24.324 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 538 ;15.413 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.472 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 440 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2392 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1868 ;46.146 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3008 ;44.184 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1284 ;98.411 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1242 ;73.770 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LTA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000081058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630 REMARK 200 MONOCHROMATOR : DIAMOND I03 REMARK 200 OPTICS : DIAMOND I03 REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26994 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 26.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.21900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1X7N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.35M MAGNESIUM CHLORIDE, 0.1M SODIUM REMARK 280 ACETATE, 19% PEG4000, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.47500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.23500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.47500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.23500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS THE BIOLOGICAL DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 28 OD2 ASP A 48 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 2 112.56 74.18 REMARK 500 GLU A 47 -49.87 -150.93 REMARK 500 LYS A 188 -131.46 -119.99 REMARK 500 GLU B 47 -27.36 -140.71 REMARK 500 ASP B 48 61.96 34.82 REMARK 500 ASP B 94 43.39 -96.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 90 NE2 REMARK 620 2 PA5 B 202 O1 164.3 REMARK 620 3 HOH B 380 O 81.8 85.2 REMARK 620 4 GLU B 97 OE1 83.9 88.1 93.3 REMARK 620 5 HIS B 136 NE2 112.5 80.2 165.4 85.4 REMARK 620 6 HIS B 88 NE2 100.7 89.8 98.5 167.8 82.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PA5 A 202 O1A REMARK 620 2 HIS A 90 NE2 164.9 REMARK 620 3 GLU A 97 OE1 85.8 81.7 REMARK 620 4 HIS A 136 NE2 94.7 91.8 80.6 REMARK 620 5 HIS A 88 NE2 86.6 107.6 162.7 84.5 REMARK 620 6 HOH A 357 O 84.1 89.0 97.9 178.1 96.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PA5 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PA5 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LUK RELATED DB: PDB REMARK 900 RELATED ID: 4LUL RELATED DB: PDB REMARK 900 RELATED ID: 4LUM RELATED DB: PDB DBREF 4LTA A 1 189 UNP P83194 G6PI_PYRFU 1 189 DBREF 4LTA B 1 189 UNP P83194 G6PI_PYRFU 1 189 SEQADV 4LTA ARG A 132 UNP P83194 PRO 132 ENGINEERED MUTATION SEQADV 4LTA GLY A 133 UNP P83194 TYR 133 ENGINEERED MUTATION SEQADV 4LTA ARG B 132 UNP P83194 PRO 132 ENGINEERED MUTATION SEQADV 4LTA GLY B 133 UNP P83194 TYR 133 ENGINEERED MUTATION SEQRES 1 A 189 MET TYR LYS GLU PRO PHE GLY VAL LYS VAL ASP PHE GLU SEQRES 2 A 189 THR GLY ILE ILE GLU GLY ALA LYS LYS SER VAL ARG ARG SEQRES 3 A 189 LEU SER ASP MET GLU GLY TYR PHE VAL ASP GLU ARG ALA SEQRES 4 A 189 TRP LYS GLU LEU VAL GLU LYS GLU ASP PRO VAL VAL TYR SEQRES 5 A 189 GLU VAL TYR ALA VAL GLU GLN GLU GLU LYS GLU GLY ASP SEQRES 6 A 189 LEU ASN PHE ALA THR THR VAL LEU TYR PRO GLY LYS VAL SEQRES 7 A 189 GLY LYS GLU PHE PHE PHE THR LYS GLY HIS PHE HIS ALA SEQRES 8 A 189 LYS LEU ASP ARG ALA GLU VAL TYR VAL ALA LEU LYS GLY SEQRES 9 A 189 LYS GLY GLY MET LEU LEU GLN THR PRO GLU GLY ASP ALA SEQRES 10 A 189 LYS TRP ILE SER MET GLU PRO GLY THR VAL VAL TYR VAL SEQRES 11 A 189 PRO ARG GLY TRP ALA HIS ARG THR VAL ASN ILE GLY ASP SEQRES 12 A 189 GLU PRO PHE ILE PHE LEU ALA ILE TYR PRO ALA ASP ALA SEQRES 13 A 189 GLY HIS ASP TYR GLY THR ILE ALA GLU LYS GLY PHE SER SEQRES 14 A 189 LYS ILE VAL ILE GLU GLU ASN GLY GLU VAL LYS VAL VAL SEQRES 15 A 189 ASP ASN PRO ARG TRP LYS LYS SEQRES 1 B 189 MET TYR LYS GLU PRO PHE GLY VAL LYS VAL ASP PHE GLU SEQRES 2 B 189 THR GLY ILE ILE GLU GLY ALA LYS LYS SER VAL ARG ARG SEQRES 3 B 189 LEU SER ASP MET GLU GLY TYR PHE VAL ASP GLU ARG ALA SEQRES 4 B 189 TRP LYS GLU LEU VAL GLU LYS GLU ASP PRO VAL VAL TYR SEQRES 5 B 189 GLU VAL TYR ALA VAL GLU GLN GLU GLU LYS GLU GLY ASP SEQRES 6 B 189 LEU ASN PHE ALA THR THR VAL LEU TYR PRO GLY LYS VAL SEQRES 7 B 189 GLY LYS GLU PHE PHE PHE THR LYS GLY HIS PHE HIS ALA SEQRES 8 B 189 LYS LEU ASP ARG ALA GLU VAL TYR VAL ALA LEU LYS GLY SEQRES 9 B 189 LYS GLY GLY MET LEU LEU GLN THR PRO GLU GLY ASP ALA SEQRES 10 B 189 LYS TRP ILE SER MET GLU PRO GLY THR VAL VAL TYR VAL SEQRES 11 B 189 PRO ARG GLY TRP ALA HIS ARG THR VAL ASN ILE GLY ASP SEQRES 12 B 189 GLU PRO PHE ILE PHE LEU ALA ILE TYR PRO ALA ASP ALA SEQRES 13 B 189 GLY HIS ASP TYR GLY THR ILE ALA GLU LYS GLY PHE SER SEQRES 14 B 189 LYS ILE VAL ILE GLU GLU ASN GLY GLU VAL LYS VAL VAL SEQRES 15 B 189 ASP ASN PRO ARG TRP LYS LYS HET MN A 201 1 HET PA5 A 202 15 HET EDO A 203 4 HET EDO A 204 4 HET MN B 201 1 HET PA5 B 202 15 HET EDO B 203 4 HET EDO B 204 4 HETNAM MN MANGANESE (II) ION HETNAM PA5 5-PHOSPHOARABINONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MN 2(MN 2+) FORMUL 4 PA5 2(C5 H11 O9 P) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 11 HOH *140(H2 O) HELIX 1 1 SER A 28 GLU A 31 5 4 HELIX 2 2 ASP A 36 GLU A 47 1 12 HELIX 3 3 TYR A 160 GLY A 167 1 8 HELIX 4 4 SER B 28 GLU B 31 5 4 HELIX 5 5 ASP B 36 GLU B 47 1 12 HELIX 6 6 TYR B 160 GLY B 167 1 8 SHEET 1 A 7 PHE A 6 LYS A 9 0 SHEET 2 A 7 THR B 126 VAL B 130 -1 O TYR B 129 N PHE A 6 SHEET 3 A 7 GLU B 97 LYS B 103 -1 N GLU B 97 O VAL B 130 SHEET 4 A 7 PHE B 146 PRO B 153 -1 O LEU B 149 N VAL B 100 SHEET 5 A 7 LEU B 66 LEU B 73 -1 N LEU B 73 O PHE B 146 SHEET 6 A 7 VAL B 50 VAL B 57 -1 N VAL B 57 O PHE B 68 SHEET 7 A 7 LYS B 21 ARG B 26 -1 N LYS B 21 O ALA B 56 SHEET 1 B 7 LYS A 21 ARG A 26 0 SHEET 2 B 7 VAL A 50 VAL A 57 -1 O TYR A 52 N ARG A 25 SHEET 3 B 7 LEU A 66 LEU A 73 -1 O PHE A 68 N VAL A 57 SHEET 4 B 7 PHE A 146 PRO A 153 -1 O TYR A 152 N ASN A 67 SHEET 5 B 7 GLU A 97 LYS A 103 -1 N VAL A 100 O LEU A 149 SHEET 6 B 7 THR A 126 VAL A 130 -1 O THR A 126 N ALA A 101 SHEET 7 B 7 PHE B 6 LYS B 9 -1 O PHE B 6 N TYR A 129 SHEET 1 C 2 LYS A 77 VAL A 78 0 SHEET 2 C 2 GLU A 81 PHE A 82 -1 O GLU A 81 N VAL A 78 SHEET 1 D 3 ALA A 117 MET A 122 0 SHEET 2 D 3 GLY A 106 GLN A 111 -1 N GLY A 106 O MET A 122 SHEET 3 D 3 ALA A 135 ASN A 140 -1 O ARG A 137 N LEU A 109 SHEET 1 E 2 LYS A 170 GLU A 175 0 SHEET 2 E 2 GLU A 178 ASP A 183 -1 O VAL A 182 N ILE A 171 SHEET 1 F 2 LYS B 77 VAL B 78 0 SHEET 2 F 2 GLU B 81 PHE B 82 -1 O GLU B 81 N VAL B 78 SHEET 1 G 3 ALA B 117 MET B 122 0 SHEET 2 G 3 GLY B 106 GLN B 111 -1 N GLY B 106 O MET B 122 SHEET 3 G 3 ALA B 135 ASN B 140 -1 O ARG B 137 N LEU B 109 SHEET 1 H 2 LYS B 170 GLU B 175 0 SHEET 2 H 2 GLU B 178 ASP B 183 -1 O VAL B 182 N ILE B 171 LINK NE2 HIS B 90 MN MN B 201 1555 1555 2.20 LINK MN MN A 201 O1A PA5 A 202 1555 1555 2.21 LINK NE2 HIS A 90 MN MN A 201 1555 1555 2.22 LINK OE1 GLU A 97 MN MN A 201 1555 1555 2.24 LINK MN MN B 201 O1 PA5 B 202 1555 1555 2.26 LINK MN MN B 201 O HOH B 380 1555 1555 2.27 LINK OE1 GLU B 97 MN MN B 201 1555 1555 2.27 LINK NE2 HIS B 136 MN MN B 201 1555 1555 2.33 LINK NE2 HIS B 88 MN MN B 201 1555 1555 2.33 LINK NE2 HIS A 136 MN MN A 201 1555 1555 2.40 LINK NE2 HIS A 88 MN MN A 201 1555 1555 2.50 LINK MN MN A 201 O HOH A 357 1555 1555 2.74 SITE 1 AC1 6 HIS A 88 HIS A 90 GLU A 97 HIS A 136 SITE 2 AC1 6 PA5 A 202 HOH A 357 SITE 1 AC2 16 TYR A 52 THR A 71 THR A 85 GLY A 87 SITE 2 AC2 16 HIS A 88 GLU A 97 TYR A 99 HIS A 136 SITE 3 AC2 16 PHE A 148 TYR A 160 MN A 201 EDO A 203 SITE 4 AC2 16 HOH A 355 HOH A 356 HOH A 357 HOH A 358 SITE 1 AC3 3 TYR A 152 HIS A 158 PA5 A 202 SITE 1 AC4 4 SER A 23 VAL A 24 ARG A 25 GLU B 18 SITE 1 AC5 6 HIS B 88 HIS B 90 GLU B 97 HIS B 136 SITE 2 AC5 6 PA5 B 202 HOH B 380 SITE 1 AC6 19 TYR B 52 THR B 71 THR B 85 GLY B 87 SITE 2 AC6 19 HIS B 88 GLU B 97 TYR B 99 HIS B 136 SITE 3 AC6 19 PHE B 148 ALA B 150 TYR B 152 TYR B 160 SITE 4 AC6 19 MN B 201 EDO B 204 HOH B 316 HOH B 319 SITE 5 AC6 19 HOH B 376 HOH B 380 HOH B 381 SITE 1 AC7 4 ARG B 25 LYS B 86 TYR B 160 EDO B 204 SITE 1 AC8 3 TYR B 160 PA5 B 202 EDO B 203 CRYST1 72.950 74.470 75.900 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013708 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013175 0.00000 MASTER 337 0 8 6 28 0 17 6 0 0 0 30 END