HEADER LIGASE 05-JUL-13 4LJP TITLE STRUCTURE OF AN ACTIVE LIGASE (HOIP-H889A)/UBIQUITIN TRANSFER COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF31; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: E3 LIGASE HOIP CATALYTIC CORE (UNP RESIDUES 853-1072); COMPND 5 SYNONYM: HOIL-1-INTERACTING PROTEIN, HOIP, RING FINGER PROTEIN 31, COMPND 6 ZINC IN-BETWEEN-RING-FINGER UBIQUITIN-ASSOCIATED DOMAIN PROTEIN; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: POLYUBIQUITIN-C; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: UNP RESIDUES 77-152 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF31, ZIBRA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-49B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 13 ORGANISM_COMMON: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW; SOURCE 14 ORGANISM_TAXID: 9913 KEYWDS E3 LIGASE-UBIQUITIN COMPLEX, LIGASE, HOIP, RNF31, UBIQUITIN, RBR KEYWDS 2 LIGASE, E3 LIGASE, RING DOMAIN, IBR DOMAIN, ZINC FINGER EXPDTA X-RAY DIFFRACTION AUTHOR R.R.RANA,B.STIEGLITZ,M.G.KOLIOPOULOS,A.C.MORRIS-DAVIES, AUTHOR 2 E.CHRISTODOULOU,S.HOWELL,N.R.BROWN,K.RITTINGER REVDAT 6 17-JUL-19 4LJP 1 REMARK REVDAT 5 15-NOV-17 4LJP 1 REMARK REVDAT 4 10-DEC-14 4LJP 1 REMARK REVDAT 3 18-DEC-13 4LJP 1 JRNL REVDAT 2 13-NOV-13 4LJP 1 JRNL REVDAT 1 16-OCT-13 4LJP 0 JRNL AUTH B.STIEGLITZ,R.R.RANA,M.G.KOLIOPOULOS,A.C.MORRIS-DAVIES, JRNL AUTH 2 V.SCHAEFFER,E.CHRISTODOULOU,S.HOWELL,N.R.BROWN,I.DIKIC, JRNL AUTH 3 K.RITTINGER JRNL TITL STRUCTURAL BASIS FOR LIGASE-SPECIFIC CONJUGATION OF LINEAR JRNL TITL 2 UBIQUITIN CHAINS BY HOIP. JRNL REF NATURE V. 503 422 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 24141947 JRNL DOI 10.1038/NATURE12638 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 17070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1768 - 4.9191 0.98 2670 152 0.1250 0.1607 REMARK 3 2 4.9191 - 3.9057 0.96 2575 152 0.1264 0.1545 REMARK 3 3 3.9057 - 3.4123 0.96 2654 142 0.1550 0.1631 REMARK 3 4 3.4123 - 3.1005 0.97 2623 130 0.1874 0.2679 REMARK 3 5 3.1005 - 2.8784 0.97 2539 151 0.2110 0.2545 REMARK 3 6 2.8784 - 2.7087 0.95 2576 158 0.2137 0.3141 REMARK 3 7 2.7087 - 2.5731 0.98 2639 143 0.2271 0.3056 REMARK 3 8 2.5731 - 2.4611 0.98 2800 84 0.2173 0.3490 REMARK 3 9 2.4611 - 2.3664 0.99 2664 171 0.2318 0.2869 REMARK 3 10 2.3664 - 2.2847 0.98 2570 151 0.2410 0.2613 REMARK 3 11 2.2847 - 2.2133 0.97 2682 122 0.2666 0.3317 REMARK 3 12 2.2133 - 2.1500 0.98 2697 132 0.2666 0.2965 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2340 REMARK 3 ANGLE : 1.115 3163 REMARK 3 CHIRALITY : 0.071 340 REMARK 3 PLANARITY : 0.006 421 REMARK 3 DIHEDRAL : 16.864 900 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 857 THROUGH 895 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1544 46.8080 17.3213 REMARK 3 T TENSOR REMARK 3 T11: 0.4082 T22: 0.3121 REMARK 3 T33: 0.2815 T12: 0.1075 REMARK 3 T13: 0.0626 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 3.2813 L22: 8.4769 REMARK 3 L33: 6.2392 L12: -4.3493 REMARK 3 L13: -1.6660 L23: 2.8500 REMARK 3 S TENSOR REMARK 3 S11: -0.2512 S12: -0.1126 S13: 0.1807 REMARK 3 S21: 0.5493 S22: 0.0696 S23: -0.0410 REMARK 3 S31: -0.1156 S32: 0.1193 S33: 0.1905 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 896 THROUGH 938 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9879 50.1785 0.8215 REMARK 3 T TENSOR REMARK 3 T11: 0.3259 T22: 0.3129 REMARK 3 T33: 0.2879 T12: 0.0895 REMARK 3 T13: -0.0359 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 7.4308 L22: 2.8978 REMARK 3 L33: 4.6080 L12: -1.2919 REMARK 3 L13: -0.7063 L23: 0.7702 REMARK 3 S TENSOR REMARK 3 S11: -0.0298 S12: 0.5963 S13: 0.2553 REMARK 3 S21: -0.2045 S22: -0.0370 S23: 0.5624 REMARK 3 S31: -0.3459 S32: -0.6010 S33: 0.0750 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 939 THROUGH 1012 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8153 33.1396 11.7477 REMARK 3 T TENSOR REMARK 3 T11: 0.5578 T22: 0.3988 REMARK 3 T33: 0.3673 T12: 0.2556 REMARK 3 T13: 0.0657 T23: 0.0480 REMARK 3 L TENSOR REMARK 3 L11: 3.2305 L22: 3.2007 REMARK 3 L33: 3.7752 L12: 0.5525 REMARK 3 L13: -0.8910 L23: -0.0276 REMARK 3 S TENSOR REMARK 3 S11: -0.2732 S12: -0.3719 S13: -0.7253 REMARK 3 S21: 0.3886 S22: -0.0928 S23: -0.2067 REMARK 3 S31: 0.8663 S32: 0.6626 S33: 0.2949 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1013 THROUGH 1060 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2669 51.5709 -12.0920 REMARK 3 T TENSOR REMARK 3 T11: 0.4972 T22: 0.4953 REMARK 3 T33: 0.3222 T12: 0.0614 REMARK 3 T13: 0.0547 T23: 0.0505 REMARK 3 L TENSOR REMARK 3 L11: 3.2761 L22: 3.1328 REMARK 3 L33: 5.4621 L12: 0.5522 REMARK 3 L13: -2.6105 L23: -2.1083 REMARK 3 S TENSOR REMARK 3 S11: 0.1291 S12: 0.6358 S13: 0.4333 REMARK 3 S21: -0.5508 S22: 0.1745 S23: 0.0160 REMARK 3 S31: -0.9803 S32: -0.5737 S33: -0.2743 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1061 THROUGH 1071 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7607 54.3204 7.9290 REMARK 3 T TENSOR REMARK 3 T11: 0.5467 T22: 0.4919 REMARK 3 T33: 0.3128 T12: -0.0210 REMARK 3 T13: 0.0010 T23: -0.0559 REMARK 3 L TENSOR REMARK 3 L11: 9.2478 L22: 2.3366 REMARK 3 L33: 3.3106 L12: -0.0773 REMARK 3 L13: -5.5385 L23: 0.0353 REMARK 3 S TENSOR REMARK 3 S11: 0.2661 S12: -0.9347 S13: -0.1150 REMARK 3 S21: 0.8162 S22: 0.0901 S23: -0.0179 REMARK 3 S31: -1.4920 S32: 1.2225 S33: 0.0208 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9424 34.0321 -3.7097 REMARK 3 T TENSOR REMARK 3 T11: 0.3760 T22: 0.3618 REMARK 3 T33: 0.2904 T12: 0.1185 REMARK 3 T13: -0.0194 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 9.4767 L22: 4.3487 REMARK 3 L33: 1.9897 L12: 0.5903 REMARK 3 L13: 0.4481 L23: 0.0320 REMARK 3 S TENSOR REMARK 3 S11: -0.1867 S12: 0.2015 S13: -0.2740 REMARK 3 S21: 0.4327 S22: 0.0141 S23: -0.3353 REMARK 3 S31: 0.2238 S32: 0.0338 S33: 0.1624 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8293 42.6363 -6.1267 REMARK 3 T TENSOR REMARK 3 T11: 0.3055 T22: 0.4438 REMARK 3 T33: 0.3493 T12: 0.1824 REMARK 3 T13: -0.0759 T23: -0.0958 REMARK 3 L TENSOR REMARK 3 L11: 7.7810 L22: 5.0357 REMARK 3 L33: 6.5382 L12: 5.8802 REMARK 3 L13: -1.6499 L23: -2.1213 REMARK 3 S TENSOR REMARK 3 S11: -0.2722 S12: 0.3032 S13: 0.4405 REMARK 3 S21: 0.1858 S22: 0.0139 S23: 0.2479 REMARK 3 S31: -0.5391 S32: -0.7405 S33: 0.1736 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8015 38.6168 -15.6378 REMARK 3 T TENSOR REMARK 3 T11: 0.2324 T22: 0.6422 REMARK 3 T33: 0.3720 T12: -0.0051 REMARK 3 T13: -0.0310 T23: -0.0778 REMARK 3 L TENSOR REMARK 3 L11: 6.1056 L22: 3.6808 REMARK 3 L33: 6.5816 L12: 3.3154 REMARK 3 L13: -2.1568 L23: -4.2848 REMARK 3 S TENSOR REMARK 3 S11: -0.3597 S12: 1.3697 S13: 0.1221 REMARK 3 S21: -0.5751 S22: 0.3059 S23: 0.4126 REMARK 3 S31: 0.2213 S32: -0.5640 S33: -0.1019 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.4015 32.7316 -10.5229 REMARK 3 T TENSOR REMARK 3 T11: 0.2915 T22: 0.7216 REMARK 3 T33: 0.5503 T12: -0.1079 REMARK 3 T13: 0.0220 T23: -0.0791 REMARK 3 L TENSOR REMARK 3 L11: 6.4128 L22: 8.1259 REMARK 3 L33: 6.9809 L12: -5.8453 REMARK 3 L13: -0.2711 L23: 0.0466 REMARK 3 S TENSOR REMARK 3 S11: -0.1362 S12: 1.1194 S13: -0.5332 REMARK 3 S21: -0.4724 S22: 0.0057 S23: 1.0551 REMARK 3 S31: 0.6014 S32: -1.1130 S33: 0.2627 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 55 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.8568 33.2329 -0.4311 REMARK 3 T TENSOR REMARK 3 T11: 0.3890 T22: 0.6032 REMARK 3 T33: 0.3188 T12: 0.0208 REMARK 3 T13: 0.0637 T23: -0.0687 REMARK 3 L TENSOR REMARK 3 L11: 3.7796 L22: 7.0845 REMARK 3 L33: 6.9730 L12: -3.8225 REMARK 3 L13: 4.8861 L23: -3.4841 REMARK 3 S TENSOR REMARK 3 S11: -0.2526 S12: -1.3428 S13: 0.1801 REMARK 3 S21: 0.6756 S22: 0.0611 S23: 0.4520 REMARK 3 S31: 0.0863 S32: -1.1994 S33: 0.2220 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4001 31.4395 -10.8243 REMARK 3 T TENSOR REMARK 3 T11: 0.3251 T22: 0.5347 REMARK 3 T33: 0.2157 T12: 0.0112 REMARK 3 T13: -0.0187 T23: -0.1092 REMARK 3 L TENSOR REMARK 3 L11: 5.0387 L22: 1.2614 REMARK 3 L33: 6.0837 L12: -0.3963 REMARK 3 L13: -5.4776 L23: 0.0224 REMARK 3 S TENSOR REMARK 3 S11: -0.6698 S12: 1.1530 S13: -1.1425 REMARK 3 S21: -0.2585 S22: 0.0013 S23: -0.0421 REMARK 3 S31: 0.8181 S32: -0.5396 S33: 0.5783 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4993 37.5597 -26.7189 REMARK 3 T TENSOR REMARK 3 T11: 0.2962 T22: 0.5281 REMARK 3 T33: 0.2892 T12: -0.1336 REMARK 3 T13: -0.0221 T23: -0.1450 REMARK 3 L TENSOR REMARK 3 L11: 7.4947 L22: 5.3668 REMARK 3 L33: 6.8911 L12: -4.6580 REMARK 3 L13: -5.2781 L23: 5.8967 REMARK 3 S TENSOR REMARK 3 S11: -0.0325 S12: -0.2493 S13: 0.0901 REMARK 3 S21: -0.3676 S22: -0.1569 S23: 0.5199 REMARK 3 S31: -0.3795 S32: 1.0719 S33: 0.4119 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCP4 REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17108 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 38.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: PDB ENTRY 4LJO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMINO ACIDS, 0.1 M IMIDAZOLE, REMARK 280 MES, 30 % P550 MME_P20K , PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.45667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.91333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 850 REMARK 465 PRO A 851 REMARK 465 GLY A 852 REMARK 465 PRO A 853 REMARK 465 GLU A 854 REMARK 465 TYR A 855 REMARK 465 GLN A 856 REMARK 465 LYS A 1072 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 958 158.22 -47.28 REMARK 500 ASN A 979 41.60 70.92 REMARK 500 ALA A 995 19.00 59.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 926 ND1 REMARK 620 2 CYS A 901 SG 110.0 REMARK 620 3 CYS A 930 SG 117.6 112.4 REMARK 620 4 CYS A 898 SG 98.0 112.0 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 925 NE2 REMARK 620 2 HIS A 923 NE2 115.1 REMARK 620 3 CYS A 916 SG 117.7 97.4 REMARK 620 4 CYS A 911 SG 93.6 103.9 129.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1001 ND1 REMARK 620 2 CYS A 986 SG 107.6 REMARK 620 3 CYS A 969 SG 104.7 113.4 REMARK 620 4 CYS A 998 SG 102.0 111.2 116.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 890 SG REMARK 620 2 CYS A 893 SG 108.8 REMARK 620 3 CYS A 871 SG 109.6 106.6 REMARK 620 4 CYS A 874 SG 107.0 118.3 106.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1104 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LJO RELATED DB: PDB REMARK 900 RELATED ID: 4LJQ RELATED DB: PDB DBREF 4LJP A 853 1072 UNP Q96EP0 RNF31_HUMAN 853 1072 DBREF 4LJP B 1 76 UNP E1B9K1 E1B9K1_BOVIN 77 152 SEQADV 4LJP GLY A 850 UNP Q96EP0 EXPRESSION TAG SEQADV 4LJP PRO A 851 UNP Q96EP0 EXPRESSION TAG SEQADV 4LJP GLY A 852 UNP Q96EP0 EXPRESSION TAG SEQADV 4LJP ALA A 889 UNP Q96EP0 HIS 889 ENGINEERED MUTATION SEQRES 1 A 223 GLY PRO GLY PRO GLU TYR GLN ALA GLN GLY LEU ALA MET SEQRES 2 A 223 TYR LEU GLN GLU ASN GLY ILE ASP CYS PRO LYS CYS LYS SEQRES 3 A 223 PHE SER TYR ALA LEU ALA ARG GLY GLY CYS MET HIS PHE SEQRES 4 A 223 ALA CYS THR GLN CYS ARG HIS GLN PHE CYS SER GLY CYS SEQRES 5 A 223 TYR ASN ALA PHE TYR ALA LYS ASN LYS CYS PRO GLU PRO SEQRES 6 A 223 ASN CYS ARG VAL LYS LYS SER LEU HIS GLY HIS HIS PRO SEQRES 7 A 223 ARG ASP CYS LEU PHE TYR LEU ARG ASP TRP THR ALA LEU SEQRES 8 A 223 ARG LEU GLN LYS LEU LEU GLN ASP ASN ASN VAL MET PHE SEQRES 9 A 223 ASN THR GLU PRO PRO ALA GLY ALA ARG ALA VAL PRO GLY SEQRES 10 A 223 GLY GLY CYS ARG VAL ILE GLU GLN LYS GLU VAL PRO ASN SEQRES 11 A 223 GLY LEU ARG ASP GLU ALA CYS GLY LYS GLU THR PRO ALA SEQRES 12 A 223 GLY TYR ALA GLY LEU CYS GLN ALA HIS TYR LYS GLU TYR SEQRES 13 A 223 LEU VAL SER LEU ILE ASN ALA HIS SER LEU ASP PRO ALA SEQRES 14 A 223 THR LEU TYR GLU VAL GLU GLU LEU GLU THR ALA THR GLU SEQRES 15 A 223 ARG TYR LEU HIS VAL ARG PRO GLN PRO LEU ALA GLY GLU SEQRES 16 A 223 ASP PRO PRO ALA TYR GLN ALA ARG LEU LEU GLN LYS LEU SEQRES 17 A 223 THR GLU GLU VAL PRO LEU GLY GLN SER ILE PRO ARG ARG SEQRES 18 A 223 ARG LYS SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET ZN A1101 1 HET ZN A1102 1 HET ZN A1103 1 HET ZN A1104 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *120(H2 O) HELIX 1 1 ALA A 857 GLN A 865 1 9 HELIX 2 2 CYS A 930 ARG A 935 1 6 HELIX 3 3 THR A 938 ASN A 949 1 12 HELIX 4 4 CYS A 998 HIS A 1013 1 16 HELIX 5 5 ASP A 1016 TYR A 1021 5 6 HELIX 6 6 GLU A 1022 HIS A 1035 1 14 HELIX 7 7 ASP A 1045 VAL A 1061 1 17 HELIX 8 8 THR B 22 GLY B 35 1 14 HELIX 9 9 PRO B 37 ASP B 39 5 3 HELIX 10 10 LEU B 56 ASN B 60 5 5 SHEET 1 A 2 GLY A 868 ASP A 870 0 SHEET 2 A 2 SER A 877 ALA A 879 -1 O TYR A 878 N ILE A 869 SHEET 1 B 2 HIS A 887 ALA A 889 0 SHEET 2 B 2 GLN A 896 CYS A 898 -1 O PHE A 897 N PHE A 888 SHEET 1 C 2 ILE A 972 VAL A 977 0 SHEET 2 C 2 GLY A 980 ALA A 985 -1 O GLU A 984 N GLU A 973 SHEET 1 D 5 THR B 12 GLU B 16 0 SHEET 2 D 5 GLN B 2 LYS B 6 -1 N ILE B 3 O LEU B 15 SHEET 3 D 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 D 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 D 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK ND1 HIS A 926 ZN ZN A1102 1555 1555 2.09 LINK NE2 HIS A 925 ZN ZN A1103 1555 1555 2.12 LINK ND1 HIS A1001 ZN ZN A1104 1555 1555 2.14 LINK NE2 HIS A 923 ZN ZN A1103 1555 1555 2.14 LINK SG CYS A 916 ZN ZN A1103 1555 1555 2.22 LINK SG CYS A 986 ZN ZN A1104 1555 1555 2.25 LINK SG CYS A 901 ZN ZN A1102 1555 1555 2.25 LINK SG CYS A 890 ZN ZN A1101 1555 1555 2.28 LINK SG CYS A 893 ZN ZN A1101 1555 1555 2.30 LINK SG CYS A 911 ZN ZN A1103 1555 1555 2.32 LINK SG CYS A 969 ZN ZN A1104 1555 1555 2.38 LINK SG CYS A 998 ZN ZN A1104 1555 1555 2.41 LINK SG CYS A 930 ZN ZN A1102 1555 1555 2.42 LINK SG CYS A 898 ZN ZN A1102 1555 1555 2.43 LINK SG CYS A 871 ZN ZN A1101 1555 1555 2.49 LINK SG CYS A 874 ZN ZN A1101 1555 1555 2.50 SITE 1 AC1 4 CYS A 871 CYS A 874 CYS A 890 CYS A 893 SITE 1 AC2 4 CYS A 898 CYS A 901 HIS A 926 CYS A 930 SITE 1 AC3 4 CYS A 911 CYS A 916 HIS A 923 HIS A 925 SITE 1 AC4 4 CYS A 969 CYS A 986 CYS A 998 HIS A1001 CRYST1 46.000 46.000 133.370 90.00 90.00 120.00 P 31 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021739 0.012551 0.000000 0.00000 SCALE2 0.000000 0.025102 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007498 0.00000 MASTER 476 0 4 10 11 0 4 6 0 0 0 24 END